RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 PAK3O75914 559 aaPredicted RBP29.23■■■□□ 2.27
NCKIPSD-206ENST00000439518 PLCH1Q4KWH8 1693 aa29.22■■■□□ 2.27
NCKIPSD-206ENST00000439518 VPS72Q15906 364 aa29.22■■■□□ 2.27
NCKIPSD-206ENST00000439518 ACEP12821 1306 aa29.2■■■□□ 2.27
NCKIPSD-206ENST00000439518 NBPF8Q3BBV2 869 aa29.2■■■□□ 2.26
NCKIPSD-206ENST00000439518 TRPM1Q7Z4N2 1603 aa29.2■■■□□ 2.26
NCKIPSD-206ENST00000439518 CRYBG1Q9Y4K1 1723 aa29.18■■■□□ 2.26
NCKIPSD-206ENST00000439518 QRICH2Q9H0J4 1663 aa29.16■■■□□ 2.26
NCKIPSD-206ENST00000439518 SRPK2P78362 688 aaKnown RBP29.16■■■□□ 2.26
NCKIPSD-206ENST00000439518 CABP2Q9NPB3 220 aa29.15■■■□□ 2.26
NCKIPSD-206ENST00000439518 EP400Q96L91 3159 aa29.15■■■□□ 2.26
NCKIPSD-206ENST00000439518 ONECUT3O60422 494 aaPredicted RBP29.14■■■□□ 2.26
NCKIPSD-206ENST00000439518 COL14A1Q05707 1796 aaKnown RBP29.13■■■□□ 2.25
NCKIPSD-206ENST00000439518 BTG4Q9NY30 223 aa29.13■■■□□ 2.25
NCKIPSD-206ENST00000439518 ROCK2O75116 1388 aaKnown RBP29.13■■■□□ 2.25
NCKIPSD-206ENST00000439518 PPIP5K1Q6PFW1 1433 aa29.12■■■□□ 2.25
NCKIPSD-206ENST00000439518 CCDC9Q9Y3X0 531 aaKnown RBP29.12■■■□□ 2.25
NCKIPSD-206ENST00000439518 NRAPQ86VF7 1730 aa29.11■■■□□ 2.25
NCKIPSD-206ENST00000439518 SEPT12Q8IYM1 358 aa29.1■■■□□ 2.25
NCKIPSD-206ENST00000439518 PRDM11Q9NQV5 511 aa29.09■■■□□ 2.25
NCKIPSD-206ENST00000439518 NUTM2GQ5VZR2 741 aa29.08■■■□□ 2.25
NCKIPSD-206ENST00000439518 KIAA0232Q92628 1395 aa29.07■■■□□ 2.24
NCKIPSD-206ENST00000439518 PHRF1Q9P1Y6 1649 aaKnown RBP29.06■■■□□ 2.24
NCKIPSD-206ENST00000439518 EVC2Q86UK5 1308 aa29.06■■■□□ 2.24
NCKIPSD-206ENST00000439518 TRIM26Q12899 539 aaPredicted RBP29.06■■■□□ 2.24
NCKIPSD-206ENST00000439518 CCDC125Q86Z20 511 aa29.06■■■□□ 2.24
NCKIPSD-206ENST00000439518 ABTB2Q8N961 1025 aa29.05■■■□□ 2.24
NCKIPSD-206ENST00000439518 CABP1Q9NZU7 370 aa29.05■■■□□ 2.24
NCKIPSD-206ENST00000439518 BRWD3Q6RI45 1802 aa29.05■■■□□ 2.24
NCKIPSD-206ENST00000439518 BRD4O60885 1362 aaPredicted RBP29.04■■■□□ 2.24
NCKIPSD-206ENST00000439518 USP19O94966 1318 aa29.02■■■□□ 2.24
NCKIPSD-206ENST00000439518 SPATA31A5Q5VU36 1347 aa29.02■■■□□ 2.24
NCKIPSD-206ENST00000439518 SPATA31A7Q8IWB4 1347 aa29.02■■■□□ 2.24
NCKIPSD-206ENST00000439518 ZC3H6P61129 1189 aaKnown RBP29.02■■■□□ 2.24
NCKIPSD-206ENST00000439518 CHRNA2Q15822 529 aa29.02■■■□□ 2.24
NCKIPSD-206ENST00000439518 FAM98CQ17RN3 349 aaKnown RBP29■■■□□ 2.23
NCKIPSD-206ENST00000439518 USP6P35125 1406 aa29■■■□□ 2.23
NCKIPSD-206ENST00000439518 NRKQ7Z2Y5 1582 aa28.98■■■□□ 2.23
NCKIPSD-206ENST00000439518 KRT27Q7Z3Y8 459 aa28.98■■■□□ 2.23
NCKIPSD-206ENST00000439518 NLRP13Q86W25 1043 aa28.98■■■□□ 2.23
NCKIPSD-206ENST00000439518 TONSLQ96HA7 1378 aa28.98■■■□□ 2.23
NCKIPSD-206ENST00000439518 CPDO75976 1380 aa28.97■■■□□ 2.23
NCKIPSD-206ENST00000439518 BLMP54132 1417 aaPredicted RBP28.96■■■□□ 2.23
NCKIPSD-206ENST00000439518 SSH2Q76I76 1423 aa28.96■■■□□ 2.23
NCKIPSD-206ENST00000439518 SBNO2Q9Y2G9 1366 aa28.95■■■□□ 2.22
NCKIPSD-206ENST00000439518 GCP02774 474 aa28.94■■■□□ 2.22
NCKIPSD-206ENST00000439518 CARD11Q9BXL7 1154 aa28.94■■■□□ 2.22
NCKIPSD-206ENST00000439518 A0A0G2JS52 829 aa28.93■■■□□ 2.22
NCKIPSD-206ENST00000439518 MYT1Q01538 1121 aa28.93■■■□□ 2.22
NCKIPSD-206ENST00000439518 SPATA31A1Q5TZJ5 1347 aa28.93■■■□□ 2.22
NCKIPSD-206ENST00000439518 STRN4Q9NRL3 753 aa28.92■■■□□ 2.22
NCKIPSD-206ENST00000439518 CAMTA1Q9Y6Y1 1673 aa28.91■■■□□ 2.22
NCKIPSD-206ENST00000439518 NLRP6P59044 892 aa28.9■■■□□ 2.22
NCKIPSD-206ENST00000439518 ZNF692Q9BU19 519 aaPredicted RBP28.9■■■□□ 2.22
NCKIPSD-206ENST00000439518 THSD7AQ9UPZ6 1657 aa28.89■■■□□ 2.22
NCKIPSD-206ENST00000439518 LMO7Q8WWI1 1683 aa28.89■■■□□ 2.21
NCKIPSD-206ENST00000439518 CPSF1Q10570 1443 aaKnown RBP28.87■■■□□ 2.21
NCKIPSD-206ENST00000439518 SLIT3O75094 1523 aa28.86■■■□□ 2.21
NCKIPSD-206ENST00000439518 EVA1CP58658 441 aa28.86■■■□□ 2.21
NCKIPSD-206ENST00000439518 PIK3C2AO00443 1686 aa28.86■■■□□ 2.21
NCKIPSD-206ENST00000439518 TTC21BQ7Z4L5 1316 aa28.85■■■□□ 2.21
NCKIPSD-206ENST00000439518 AKAP12Q02952 1782 aa28.84■■■□□ 2.21
NCKIPSD-206ENST00000439518 SF3B2Q13435 895 aaKnown RBP28.83■■■□□ 2.21
NCKIPSD-206ENST00000439518 LARP1Q6PKG0 1096 aaKnown RBP28.83■■■□□ 2.21
NCKIPSD-206ENST00000439518 DEFB132Q7Z7B7 95 aa28.83■■■□□ 2.21
NCKIPSD-206ENST00000439518 ZRANB1Q9UGI0 708 aa28.82■■■□□ 2.2
NCKIPSD-206ENST00000439518 AATKQ6ZMQ8 1374 aa28.81■■■□□ 2.2
NCKIPSD-206ENST00000439518 TTC21AQ8NDW8 1320 aa28.81■■■□□ 2.2
NCKIPSD-206ENST00000439518 BARGINQ6ZT62 677 aa28.81■■■□□ 2.2
NCKIPSD-206ENST00000439518 KTN1Q86UP2 1357 aaKnown RBP28.8■■■□□ 2.2
NCKIPSD-206ENST00000439518 FAM182BQ5T319 152 aa28.8■■■□□ 2.2
NCKIPSD-206ENST00000439518 USP35Q9P2H5 1018 aa28.8■■■□□ 2.2
NCKIPSD-206ENST00000439518 COL5A2P05997 1499 aaPredicted RBP28.79■■■□□ 2.2
NCKIPSD-206ENST00000439518 TCP11L2Q8N4U5 519 aa28.77■■■□□ 2.2
NCKIPSD-206ENST00000439518 CD163L1Q9NR16 1453 aa28.76■■■□□ 2.19
NCKIPSD-206ENST00000439518 PUS7Q96PZ0 661 aaKnown RBP28.75■■■□□ 2.19
NCKIPSD-206ENST00000439518 THRAP3Q9Y2W1 955 aaKnown RBP28.75■■■□□ 2.19
NCKIPSD-206ENST00000439518 SRCAPQ6ZRS2 3230 aa28.75■■■□□ 2.19
NCKIPSD-206ENST00000439518 MON2Q7Z3U7 1717 aa28.74■■■□□ 2.19
NCKIPSD-206ENST00000439518 ZBTB7CA1YPR0 619 aa28.74■■■□□ 2.19
NCKIPSD-206ENST00000439518 ARHGEF25Q86VW2 580 aa28.74■■■□□ 2.19
NCKIPSD-206ENST00000439518 KCNH5Q8NCM2 988 aa28.74■■■□□ 2.19
NCKIPSD-206ENST00000439518 COL18A1P39060 1754 aa28.73■■■□□ 2.19
NCKIPSD-206ENST00000439518 TESK2Q96S53 571 aa28.73■■■□□ 2.19
NCKIPSD-206ENST00000439518 CRB1P82279 1406 aa28.72■■■□□ 2.19
NCKIPSD-206ENST00000439518 SLC12A5Q9H2X9 1139 aa28.72■■■□□ 2.19
NCKIPSD-206ENST00000439518 ST20-MTHFSA0A0A6YYL1 179 aa28.71■■■□□ 2.19
NCKIPSD-206ENST00000439518 BAG6P46379 1132 aa28.71■■■□□ 2.19
NCKIPSD-206ENST00000439518 TMC1Q8TDI8 760 aa28.71■■■□□ 2.19
NCKIPSD-206ENST00000439518 AXIN2Q9Y2T1 843 aa28.71■■■□□ 2.19
NCKIPSD-206ENST00000439518 FAM196AQ6ZSG2 479 aa28.7■■■□□ 2.18
NCKIPSD-206ENST00000439518 USP31Q70CQ4 1352 aa28.69■■■□□ 2.18
NCKIPSD-206ENST00000439518 RGPD1P0DJD0 1748 aa28.69■■■□□ 2.18
NCKIPSD-206ENST00000439518 NFAT5O94916 1531 aa28.69■■■□□ 2.18
NCKIPSD-206ENST00000439518 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.68■■■□□ 2.18
NCKIPSD-206ENST00000439518 PDE3BQ13370 1112 aa28.67■■■□□ 2.18
NCKIPSD-206ENST00000439518 HDGFL2Q7Z4V5 671 aaPredicted RBP28.67■■■□□ 2.18
NCKIPSD-206ENST00000439518 SOX12O15370 315 aa28.66■■■□□ 2.18
NCKIPSD-206ENST00000439518 DISP2A7MBM2 1401 aa28.66■■■□□ 2.18
NCKIPSD-206ENST00000439518 WDR17Q8IZU2 1322 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms