RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 PLEKHG5O94827 1062 aa35■■■■□ 3.19
RAPGEF1-206ENST00000438647 CCER1Q8TC90 406 aaPredicted RBP35■■■■□ 3.19
RAPGEF1-206ENST00000438647 TRPC5Q9UL62 973 aaPredicted RBP34.99■■■■□ 3.19
RAPGEF1-206ENST00000438647 CABP1Q9NZU7 370 aa34.98■■■■□ 3.19
RAPGEF1-206ENST00000438647 ATAD2Q6PL18 1390 aa34.98■■■■□ 3.19
RAPGEF1-206ENST00000438647 RBM6P78332 1123 aaKnown RBP34.97■■■■□ 3.19
RAPGEF1-206ENST00000438647 ABCA3Q99758 1704 aa34.97■■■■□ 3.19
RAPGEF1-206ENST00000438647 BRD4O60885 1362 aaPredicted RBP34.96■■■■□ 3.19
RAPGEF1-206ENST00000438647 CDK12Q9NYV4 1490 aaPredicted RBP34.96■■■■□ 3.19
RAPGEF1-206ENST00000438647 BCL9LQ86UU0 1499 aa34.93■■■■□ 3.18
RAPGEF1-206ENST00000438647 SLIT2O94813 1529 aa34.92■■■■□ 3.18
RAPGEF1-206ENST00000438647 SLC24A1O60721 1099 aa34.91■■■■□ 3.18
RAPGEF1-206ENST00000438647 ATRNO75882 1429 aa34.9■■■■□ 3.18
RAPGEF1-206ENST00000438647 UNC5CLQ8IV45 518 aa34.89■■■■□ 3.18
RAPGEF1-206ENST00000438647 ABTB2Q8N961 1025 aa34.88■■■■□ 3.17
RAPGEF1-206ENST00000438647 USP6P35125 1406 aa34.88■■■■□ 3.17
RAPGEF1-206ENST00000438647 TNKS1BP1Q9C0C2 1729 aaKnown RBP34.86■■■■□ 3.17
RAPGEF1-206ENST00000438647 ST20-MTHFSA0A0A6YYL1 179 aa34.86■■■■□ 3.17
RAPGEF1-206ENST00000438647 ZNF692Q9BU19 519 aaPredicted RBP34.86■■■■□ 3.17
RAPGEF1-206ENST00000438647 CRYBG1Q9Y4K1 1723 aa34.84■■■■□ 3.17
RAPGEF1-206ENST00000438647 NUTM2GQ5VZR2 741 aa34.83■■■■□ 3.17
RAPGEF1-206ENST00000438647 PUS7Q96PZ0 661 aaKnown RBP34.83■■■■□ 3.17
RAPGEF1-206ENST00000438647 USP47Q96K76 1375 aa34.83■■■■□ 3.17
RAPGEF1-206ENST00000438647 NWD2Q9ULI1 1742 aa34.82■■■■□ 3.16
RAPGEF1-206ENST00000438647 FAM83GA6ND36 823 aa34.82■■■■□ 3.16
RAPGEF1-206ENST00000438647 NLRP13Q86W25 1043 aa34.81■■■■□ 3.16
RAPGEF1-206ENST00000438647 TESK2Q96S53 571 aa34.81■■■■□ 3.16
RAPGEF1-206ENST00000438647 PLCH1Q4KWH8 1693 aa34.8■■■■□ 3.16
RAPGEF1-206ENST00000438647 GJD4Q96KN9 370 aaPredicted RBP34.8■■■■□ 3.16
RAPGEF1-206ENST00000438647 RGS12O14924 1447 aa34.8■■■■□ 3.16
RAPGEF1-206ENST00000438647 PRDM11Q9NQV5 511 aa34.79■■■■□ 3.16
RAPGEF1-206ENST00000438647 PHRF1Q9P1Y6 1649 aaKnown RBP34.78■■■■□ 3.16
RAPGEF1-206ENST00000438647 COL14A1Q05707 1796 aaKnown RBP34.78■■■■□ 3.16
RAPGEF1-206ENST00000438647 CPSF1Q10570 1443 aaKnown RBP34.77■■■■□ 3.16
RAPGEF1-206ENST00000438647 SSH2Q76I76 1423 aa34.77■■■■□ 3.16
RAPGEF1-206ENST00000438647 USP19O94966 1318 aa34.77■■■■□ 3.16
RAPGEF1-206ENST00000438647 AKAP12Q02952 1782 aa34.75■■■■□ 3.15
RAPGEF1-206ENST00000438647 VPS72Q15906 364 aa34.75■■■■□ 3.15
RAPGEF1-206ENST00000438647 TMC1Q8TDI8 760 aa34.75■■■■□ 3.15
RAPGEF1-206ENST00000438647 KTN1Q86UP2 1357 aaKnown RBP34.74■■■■□ 3.15
RAPGEF1-206ENST00000438647 BTG4Q9NY30 223 aa34.74■■■■□ 3.15
RAPGEF1-206ENST00000438647 KIAA0232Q92628 1395 aa34.74■■■■□ 3.15
RAPGEF1-206ENST00000438647 NLRP6P59044 892 aa34.73■■■■□ 3.15
RAPGEF1-206ENST00000438647 TTC21AQ8NDW8 1320 aa34.73■■■■□ 3.15
RAPGEF1-206ENST00000438647 TTC21BQ7Z4L5 1316 aa34.72■■■■□ 3.15
RAPGEF1-206ENST00000438647 NRKQ7Z2Y5 1582 aa34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 ZC3H6P61129 1189 aaKnown RBP34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 TMF1P82094 1093 aa34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 HDGFL2Q7Z4V5 671 aaPredicted RBP34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 CCDC9Q9Y3X0 531 aaKnown RBP34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 NINLQ9Y2I6 1382 aa34.7■■■■□ 3.15
RAPGEF1-206ENST00000438647 GCP02774 474 aa34.69■■■■□ 3.14
RAPGEF1-206ENST00000438647 SLC12A5Q9H2X9 1139 aa34.68■■■■□ 3.14
RAPGEF1-206ENST00000438647 TERF2IPQ9NYB0 399 aa34.68■■■■□ 3.14
RAPGEF1-206ENST00000438647 CPDO75976 1380 aa34.67■■■■□ 3.14
RAPGEF1-206ENST00000438647 NRAPQ86VF7 1730 aa34.67■■■■□ 3.14
RAPGEF1-206ENST00000438647 PIK3C2AO00443 1686 aa34.66■■■■□ 3.14
RAPGEF1-206ENST00000438647 GLI3P10071 1580 aa34.66■■■■□ 3.14
RAPGEF1-206ENST00000438647 MON2Q7Z3U7 1717 aa34.66■■■■□ 3.14
RAPGEF1-206ENST00000438647 CHRNA2Q15822 529 aa34.65■■■■□ 3.14
RAPGEF1-206ENST00000438647 CD163L1Q9NR16 1453 aa34.65■■■■□ 3.14
RAPGEF1-206ENST00000438647 CDCA8Q53HL2 280 aa34.64■■■■□ 3.14
RAPGEF1-206ENST00000438647 SLIT3O75094 1523 aa34.62■■■■□ 3.13
RAPGEF1-206ENST00000438647 A0A1W2PP64 1363 aa34.6■■■■□ 3.13
RAPGEF1-206ENST00000438647 EDC4Q6P2E9 1401 aaKnown RBP34.59■■■■□ 3.13
RAPGEF1-206ENST00000438647 KCNH5Q8NCM2 988 aa34.59■■■■□ 3.13
RAPGEF1-206ENST00000438647 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.58■■■■□ 3.13
RAPGEF1-206ENST00000438647 UPF1Q92900 1129 aaKnown RBP eCLIP34.57■■■■□ 3.12
RAPGEF1-206ENST00000438647 ONECUT3O60422 494 aaPredicted RBP34.55■■■■□ 3.12
RAPGEF1-206ENST00000438647 STRN4Q9NRL3 753 aa34.55■■■■□ 3.12
RAPGEF1-206ENST00000438647 SPATA31A5Q5VU36 1347 aa34.55■■■■□ 3.12
RAPGEF1-206ENST00000438647 SPATA31A7Q8IWB4 1347 aa34.55■■■■□ 3.12
RAPGEF1-206ENST00000438647 EVA1CP58658 441 aa34.54■■■■□ 3.12
RAPGEF1-206ENST00000438647 USP31Q70CQ4 1352 aa34.53■■■■□ 3.12
RAPGEF1-206ENST00000438647 SEPT12Q8IYM1 358 aa34.53■■■■□ 3.12
RAPGEF1-206ENST00000438647 LMO7Q8WWI1 1683 aa34.52■■■■□ 3.12
RAPGEF1-206ENST00000438647 EIF4G2P78344 907 aaKnown RBP eCLIP34.51■■■■□ 3.12
RAPGEF1-206ENST00000438647 CAMTA1Q9Y6Y1 1673 aa34.5■■■■□ 3.11
RAPGEF1-206ENST00000438647 AATKQ6ZMQ8 1374 aa34.5■■■■□ 3.11
RAPGEF1-206ENST00000438647 ANKRD36BQ8N2N9 1353 aa34.5■■■■□ 3.11
RAPGEF1-206ENST00000438647 ZBTB7CA1YPR0 619 aa34.5■■■■□ 3.11
RAPGEF1-206ENST00000438647 A0A0G2JS52 829 aa34.49■■■■□ 3.11
RAPGEF1-206ENST00000438647 MYT1Q01538 1121 aa34.49■■■■□ 3.11
RAPGEF1-206ENST00000438647 FAM98CQ17RN3 349 aaKnown RBP34.49■■■■□ 3.11
RAPGEF1-206ENST00000438647 NME9Q86XW9 330 aa34.49■■■■□ 3.11
RAPGEF1-206ENST00000438647 SPATA31A1Q5TZJ5 1347 aa34.47■■■■□ 3.11
RAPGEF1-206ENST00000438647 SOX12O15370 315 aa34.46■■■■□ 3.11
RAPGEF1-206ENST00000438647 ARHGEF25Q86VW2 580 aa34.46■■■■□ 3.11
RAPGEF1-206ENST00000438647 USP54Q70EL1 1684 aa34.46■■■■□ 3.11
RAPGEF1-206ENST00000438647 ZRANB1Q9UGI0 708 aa34.44■■■■□ 3.1
RAPGEF1-206ENST00000438647 COL5A2P05997 1499 aaPredicted RBP34.44■■■■□ 3.1
RAPGEF1-206ENST00000438647 NFAT5O94916 1531 aa34.43■■■■□ 3.1
RAPGEF1-206ENST00000438647 EP400Q96L91 3159 aa34.41■■■■□ 3.1
RAPGEF1-206ENST00000438647 LARP1Q6PKG0 1096 aaKnown RBP34.41■■■■□ 3.1
RAPGEF1-206ENST00000438647 KRT27Q7Z3Y8 459 aa34.41■■■■□ 3.1
RAPGEF1-206ENST00000438647 HSPA5P11021 654 aaKnown RBP34.4■■■■□ 3.1
RAPGEF1-206ENST00000438647 OVOS2A0A0J9YW53 1432 aa34.39■■■■□ 3.1
RAPGEF1-206ENST00000438647 OVOS2Q6IE36 1432 aa34.39■■■■□ 3.1
RAPGEF1-206ENST00000438647 BRWD3Q6RI45 1802 aa34.39■■■■□ 3.1
RAPGEF1-206ENST00000438647 USP35Q9P2H5 1018 aa34.39■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms