RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 NUTM2FA1L443 756 aa11.44□□□□□ -0.58
VPS50-204ENST00000438395 ASTLQ6HA08 431 aaPredicted RBP11.44□□□□□ -0.58
VPS50-204ENST00000438395 TECPR2O15040 1411 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 FOXO3O43524 673 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 ATN1P54259 1190 aaPredicted RBP11.43□□□□□ -0.58
VPS50-204ENST00000438395 TMEM132EQ6IEE7 984 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 WAPLQ7Z5K2 1190 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 UPF1Q92900 1129 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS50-204ENST00000438395 BMP2KQ9NSY1 1161 aaPredicted RBP11.43□□□□□ -0.58
VPS50-204ENST00000438395 USP21Q9UK80 565 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 PIK3C2GO75747 1445 aa11.43□□□□□ -0.58
VPS50-204ENST00000438395 ABCC11Q96J66 1382 aa11.42□□□□□ -0.58
VPS50-204ENST00000438395 HAP1P54257 671 aaPredicted RBP11.42□□□□□ -0.58
VPS50-204ENST00000438395 XPCQ01831 940 aaPredicted RBP11.42□□□□□ -0.58
VPS50-204ENST00000438395 IFNL1Q8IU54 200 aa11.42□□□□□ -0.58
VPS50-204ENST00000438395 TRPC5Q9UL62 973 aaPredicted RBP11.42□□□□□ -0.58
VPS50-204ENST00000438395 RGS12O14924 1447 aa11.42□□□□□ -0.58
VPS50-204ENST00000438395 YTHDC2Q9H6S0 1430 aaKnown RBP11.42□□□□□ -0.58
VPS50-204ENST00000438395 LAMC1P11047 1609 aa11.41□□□□□ -0.58
VPS50-204ENST00000438395 DHX57Q6P158 1386 aaKnown RBP11.41□□□□□ -0.58
VPS50-204ENST00000438395 ATAD2Q6PL18 1390 aa11.4□□□□□ -0.59
VPS50-204ENST00000438395 POTEB2H3BUK9 544 aa11.39□□□□□ -0.59
VPS50-204ENST00000438395 POGKQ9P215 609 aa11.39□□□□□ -0.59
VPS50-204ENST00000438395 PLEKHH1Q9ULM0 1364 aa11.39□□□□□ -0.59
VPS50-204ENST00000438395 MYOM2P54296 1465 aa11.38□□□□□ -0.59
VPS50-204ENST00000438395 PXDNQ92626 1479 aa11.38□□□□□ -0.59
VPS50-204ENST00000438395 SAFB2Q14151 953 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS50-204ENST00000438395 C14orf93Q9H972 538 aaKnown RBP11.38□□□□□ -0.59
VPS50-204ENST00000438395 RAB3GAP2Q9H2M9 1393 aa11.38□□□□□ -0.59
VPS50-204ENST00000438395 PSME1Q06323 249 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 CFAP70Q5T0N1 1121 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 LMOD2Q6P5Q4 547 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 FNBP4Q8N3X1 1017 aaPredicted RBP11.37□□□□□ -0.59
VPS50-204ENST00000438395 SPOCK2Q92563 424 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 SIRT1Q96EB6 747 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 PRAM1Q96QH2 718 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 METRNQ9UJH8 293 aa11.37□□□□□ -0.59
VPS50-204ENST00000438395 COL22A1Q8NFW1 1626 aaPredicted RBP11.36□□□□□ -0.59
VPS50-204ENST00000438395 KNDC1Q76NI1 1749 aa11.36□□□□□ -0.59
VPS50-204ENST00000438395 IFT172Q9UG01 1749 aa11.36□□□□□ -0.59
VPS50-204ENST00000438395 TTLL13PA6NNM8 815 aa11.36□□□□□ -0.59
VPS50-204ENST00000438395 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
VPS50-204ENST00000438395 ATRNO75882 1429 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 TIE1P35590 1138 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 KRT28Q7Z3Y7 464 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 SGIP1Q9BQI5 828 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 PCDHB8Q9UN66 801 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 EIF3AQ14152 1382 aaKnown RBP11.35□□□□□ -0.59
VPS50-204ENST00000438395 NRXN1Q9ULB1 1477 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 KIF1AQ12756 1690 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 SPATA31A3Q5VYP0 1347 aa11.35□□□□□ -0.59
VPS50-204ENST00000438395 TNS3Q68CZ2 1445 aa11.34□□□□□ -0.59
VPS50-204ENST00000438395 ARHGEF10O15013 1369 aa11.33□□□□□ -0.6
VPS50-204ENST00000438395 FMN2Q9NZ56 1722 aa11.33□□□□□ -0.6
VPS50-204ENST00000438395 GSE1Q14687 1217 aa11.33□□□□□ -0.6
VPS50-204ENST00000438395 CIZ1Q9ULV3 898 aaPredicted RBP11.33□□□□□ -0.6
VPS50-204ENST00000438395 KDM2AQ9Y2K7 1162 aa11.33□□□□□ -0.6
VPS50-204ENST00000438395 CCDC9Q9Y3X0 531 aaKnown RBP11.33□□□□□ -0.6
VPS50-204ENST00000438395 ANKARQ7Z5J8 1434 aa11.33□□□□□ -0.6
VPS50-204ENST00000438395 UNC5CLQ8IV45 518 aa11.32□□□□□ -0.6
VPS50-204ENST00000438395 DCAF11Q8TEB1 546 aa11.32□□□□□ -0.6
VPS50-204ENST00000438395 SLC39A7Q92504 469 aa11.32□□□□□ -0.6
VPS50-204ENST00000438395 GJD4Q96KN9 370 aaPredicted RBP11.32□□□□□ -0.6
VPS50-204ENST00000438395 GPRASP1Q5JY77 1395 aa11.31□□□□□ -0.6
VPS50-204ENST00000438395 STAC3Q96MF2 364 aa11.31□□□□□ -0.6
VPS50-204ENST00000438395 TRAK1Q9UPV9 953 aa11.31□□□□□ -0.6
VPS50-204ENST00000438395 MINK1Q8N4C8 1332 aaPredicted RBP11.31□□□□□ -0.6
VPS50-204ENST00000438395 BCL9LQ86UU0 1499 aa11.31□□□□□ -0.6
VPS50-204ENST00000438395 DLC1Q96QB1 1528 aa11.3□□□□□ -0.6
VPS50-204ENST00000438395 SBNO1A3KN83 1393 aa11.3□□□□□ -0.6
VPS50-204ENST00000438395 A0A0G2JS52 829 aa11.3□□□□□ -0.6
VPS50-204ENST00000438395 MYT1Q01538 1121 aa11.3□□□□□ -0.6
VPS50-204ENST00000438395 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
VPS50-204ENST00000438395 C7P10643 843 aa11.29□□□□□ -0.6
VPS50-204ENST00000438395 PMFBP1Q8TBY8 1022 aa11.29□□□□□ -0.6
VPS50-204ENST00000438395 TMEM106CQ9BVX2 250 aa11.29□□□□□ -0.6
VPS50-204ENST00000438395 TRIM35Q9UPQ4 493 aa11.29□□□□□ -0.6
VPS50-204ENST00000438395 USP32Q8NFA0 1604 aa11.28□□□□□ -0.6
VPS50-204ENST00000438395 RALGAPBQ86X10 1494 aa11.28□□□□□ -0.6
VPS50-204ENST00000438395 POTEFA5A3E0 1075 aa11.28□□□□□ -0.6
VPS50-204ENST00000438395 SF3B2Q13435 895 aaKnown RBP11.28□□□□□ -0.6
VPS50-204ENST00000438395 CCDC125Q86Z20 511 aa11.28□□□□□ -0.6
VPS50-204ENST00000438395 NGDNQ8NEJ9 315 aaKnown RBP11.28□□□□□ -0.6
VPS50-204ENST00000438395 CABLES1Q8TDN4 633 aa11.28□□□□□ -0.6
VPS50-204ENST00000438395 SLIT2O94813 1529 aa11.27□□□□□ -0.61
VPS50-204ENST00000438395 ADGRB1O14514 1584 aa11.27□□□□□ -0.61
VPS50-204ENST00000438395 ADGRB2O60241 1585 aa11.27□□□□□ -0.61
VPS50-204ENST00000438395 POTEJP0CG39 1038 aa11.26□□□□□ -0.61
VPS50-204ENST00000438395 HRCP23327 699 aa11.26□□□□□ -0.61
VPS50-204ENST00000438395 VPS72Q15906 364 aa11.26□□□□□ -0.61
VPS50-204ENST00000438395 TULP4Q9NRJ4 1543 aa11.25□□□□□ -0.61
VPS50-204ENST00000438395 WASLO00401 505 aaPredicted RBP11.25□□□□□ -0.61
VPS50-204ENST00000438395 OTUD5Q96G74 571 aa11.25□□□□□ -0.61
VPS50-204ENST00000438395 MARF1Q9Y4F3 1742 aaKnown RBP11.25□□□□□ -0.61
VPS50-204ENST00000438395 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.24□□□□□ -0.61
VPS50-204ENST00000438395 SEPT12Q8IYM1 358 aa11.24□□□□□ -0.61
VPS50-204ENST00000438395 COLQQ9Y215 455 aaPredicted RBP11.24□□□□□ -0.61
VPS50-204ENST00000438395 EP400Q96L91 3159 aa11.23□□□□□ -0.61
VPS50-204ENST00000438395 PRDM11Q9NQV5 511 aa11.23□□□□□ -0.61
VPS50-204ENST00000438395 BLMP54132 1417 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms