RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TOPAZ1Q8N9V7 1692 aa17.57■□□□□ 0.4
PTPRF-208ENST00000437607 TNS1Q9HBL0 1735 aaKnown RBP17.55■□□□□ 0.4
PTPRF-208ENST00000437607 THSD7AQ9UPZ6 1657 aa17.55■□□□□ 0.4
PTPRF-208ENST00000437607 DCAF11Q8TEB1 546 aa17.54■□□□□ 0.4
PTPRF-208ENST00000437607 KDM2AQ9Y2K7 1162 aa17.54■□□□□ 0.4
PTPRF-208ENST00000437607 CCDC9Q9Y3X0 531 aaKnown RBP17.54■□□□□ 0.4
PTPRF-208ENST00000437607 KIAA1210Q9ULL0 1709 aa17.54■□□□□ 0.4
PTPRF-208ENST00000437607 ATP7BP35670 1465 aa17.53■□□□□ 0.4
PTPRF-208ENST00000437607 WASLO00401 505 aaPredicted RBP17.53■□□□□ 0.4
PTPRF-208ENST00000437607 KRT27Q7Z3Y8 459 aa17.53■□□□□ 0.4
PTPRF-208ENST00000437607 LRP5O75197 1615 aa17.53■□□□□ 0.4
PTPRF-208ENST00000437607 EIF3AQ14152 1382 aaKnown RBP17.53■□□□□ 0.4
PTPRF-208ENST00000437607 BTG4Q9NY30 223 aa17.52■□□□□ 0.4
PTPRF-208ENST00000437607 GPRASP1Q5JY77 1395 aa17.52■□□□□ 0.39
PTPRF-208ENST00000437607 FAM98CQ17RN3 349 aaKnown RBP17.5■□□□□ 0.39
PTPRF-208ENST00000437607 ZEB1P37275 1124 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-208ENST00000437607 SF3B2Q13435 895 aaKnown RBP17.47■□□□□ 0.39
PTPRF-208ENST00000437607 NGDNQ8NEJ9 315 aaKnown RBP17.47■□□□□ 0.39
PTPRF-208ENST00000437607 SPATA31A5Q5VU36 1347 aa17.47■□□□□ 0.39
PTPRF-208ENST00000437607 SPATA31A7Q8IWB4 1347 aa17.47■□□□□ 0.39
PTPRF-208ENST00000437607 STAC3Q96MF2 364 aa17.46■□□□□ 0.39
PTPRF-208ENST00000437607 NRKQ7Z2Y5 1582 aa17.45■□□□□ 0.38
PTPRF-208ENST00000437607 A0A0G2JS52 829 aa17.45■□□□□ 0.38
PTPRF-208ENST00000437607 PAK3O75914 559 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-208ENST00000437607 MYT1Q01538 1121 aa17.45■□□□□ 0.38
PTPRF-208ENST00000437607 NUDT16Q96DE0 195 aaKnown RBP17.45■□□□□ 0.38
PTPRF-208ENST00000437607 LMO7Q8WWI1 1683 aa17.45■□□□□ 0.38
PTPRF-208ENST00000437607 FAM182BQ5T319 152 aa17.44■□□□□ 0.38
PTPRF-208ENST00000437607 KIAA0232Q92628 1395 aa17.43■□□□□ 0.38
PTPRF-208ENST00000437607 QRICH2Q9H0J4 1663 aa17.42■□□□□ 0.38
PTPRF-208ENST00000437607 POLR3AO14802 1390 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-208ENST00000437607 PRDM11Q9NQV5 511 aa17.42■□□□□ 0.38
PTPRF-208ENST00000437607 BAG6P46379 1132 aa17.41■□□□□ 0.38
PTPRF-208ENST00000437607 CDK19Q9BWU1 502 aa17.41■□□□□ 0.38
PTPRF-208ENST00000437607 RREB1Q92766 1687 aa17.41■□□□□ 0.38
PTPRF-208ENST00000437607 PSDA5PKW4 1024 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-208ENST00000437607 CHRNA2Q15822 529 aa17.4■□□□□ 0.38
PTPRF-208ENST00000437607 SPATA31A1Q5TZJ5 1347 aa17.4■□□□□ 0.38
PTPRF-208ENST00000437607 TONSLQ96HA7 1378 aa17.4■□□□□ 0.38
PTPRF-208ENST00000437607 DISP2A7MBM2 1401 aa17.39■□□□□ 0.38
PTPRF-208ENST00000437607 CAMTA1Q9Y6Y1 1673 aa17.39■□□□□ 0.37
PTPRF-208ENST00000437607 EN1Q05925 392 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-208ENST00000437607 ACEP12821 1306 aa17.39■□□□□ 0.37
PTPRF-208ENST00000437607 NUP188Q5SRE5 1749 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 SBF2Q86WG5 1849 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 NEUROD1Q13562 356 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 NBPF8Q3BBV2 869 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 NUTM2GQ5VZR2 741 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 SIN3AQ96ST3 1273 aa17.38■□□□□ 0.37
PTPRF-208ENST00000437607 PARP4Q9UKK3 1724 aaKnown RBP17.38■□□□□ 0.37
PTPRF-208ENST00000437607 ZC3H6P61129 1189 aaKnown RBP17.37■□□□□ 0.37
PTPRF-208ENST00000437607 NBPF1Q3BBV0 1214 aa17.37■□□□□ 0.37
PTPRF-208ENST00000437607 RGPD5Q99666 1765 aa17.36■□□□□ 0.37
PTPRF-208ENST00000437607 WNK3Q9BYP7 1800 aa17.36■□□□□ 0.37
PTPRF-208ENST00000437607 PLEKHG3A1L390 1219 aa17.36■□□□□ 0.37
PTPRF-208ENST00000437607 STRN4Q9NRL3 753 aa17.36■□□□□ 0.37
PTPRF-208ENST00000437607 SSH2Q76I76 1423 aa17.36■□□□□ 0.37
PTPRF-208ENST00000437607 CCDC61Q9Y6R9 512 aa17.35■□□□□ 0.37
PTPRF-208ENST00000437607 COL18A1P39060 1754 aa17.35■□□□□ 0.37
PTPRF-208ENST00000437607 USP19O94966 1318 aa17.33■□□□□ 0.36
PTPRF-208ENST00000437607 EZH2Q15910 746 aaKnown RBP17.33■□□□□ 0.36
PTPRF-208ENST00000437607 AKAP12Q02952 1782 aa17.33■□□□□ 0.36
PTPRF-208ENST00000437607 PEAK1Q9H792 1746 aa17.33■□□□□ 0.36
PTPRF-208ENST00000437607 PIK3C2AO00443 1686 aa17.32■□□□□ 0.36
PTPRF-208ENST00000437607 PPIP5K1Q6PFW1 1433 aa17.32■□□□□ 0.36
PTPRF-208ENST00000437607 CPDO75976 1380 aa17.32■□□□□ 0.36
PTPRF-208ENST00000437607 TRPM1Q7Z4N2 1603 aa17.32■□□□□ 0.36
PTPRF-208ENST00000437607 ABTB2Q8N961 1025 aa17.31■□□□□ 0.36
PTPRF-208ENST00000437607 CAMKK2Q96RR4 588 aa17.31■□□□□ 0.36
PTPRF-208ENST00000437607 TIMELESSQ9UNS1 1208 aa17.31■□□□□ 0.36
PTPRF-208ENST00000437607 TRIM37O94972 964 aa17.3■□□□□ 0.36
PTPRF-208ENST00000437607 R3HDM1Q15032 1099 aaKnown RBP17.3■□□□□ 0.36
PTPRF-208ENST00000437607 LARP1Q6PKG0 1096 aaKnown RBP17.3■□□□□ 0.36
PTPRF-208ENST00000437607 FAM196AQ6ZSG2 479 aa17.3■□□□□ 0.36
PTPRF-208ENST00000437607 BARGINQ6ZT62 677 aa17.3■□□□□ 0.36
PTPRF-208ENST00000437607 USP35Q9P2H5 1018 aa17.3■□□□□ 0.36
PTPRF-208ENST00000437607 COL5A2P05997 1499 aaPredicted RBP17.3■□□□□ 0.36
PTPRF-208ENST00000437607 SLIT3O75094 1523 aa17.29■□□□□ 0.36
PTPRF-208ENST00000437607 LRRC37A3O60309 1634 aa17.29■□□□□ 0.36
PTPRF-208ENST00000437607 RGPD3A6NKT7 1758 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-208ENST00000437607 RGPD4Q7Z3J3 1758 aa17.28■□□□□ 0.36
PTPRF-208ENST00000437607 CENPJQ9HC77 1338 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-208ENST00000437607 EVA1CP58658 441 aa17.28■□□□□ 0.36
PTPRF-208ENST00000437607 CABP2Q9NPB3 220 aa17.28■□□□□ 0.36
PTPRF-208ENST00000437607 SRPK2P78362 688 aaKnown RBP17.27■□□□□ 0.36
PTPRF-208ENST00000437607 GCP02774 474 aa17.26■□□□□ 0.35
PTPRF-208ENST00000437607 USP6P35125 1406 aa17.26■□□□□ 0.35
PTPRF-208ENST00000437607 APBA3O96018 575 aa17.25■□□□□ 0.35
PTPRF-208ENST00000437607 NLRP13Q86W25 1043 aa17.25■□□□□ 0.35
PTPRF-208ENST00000437607 TCP11L2Q8N4U5 519 aa17.25■□□□□ 0.35
PTPRF-208ENST00000437607 BRD4O60885 1362 aaPredicted RBP17.25■□□□□ 0.35
PTPRF-208ENST00000437607 PARD3Q8TEW0 1356 aa17.25■□□□□ 0.35
PTPRF-208ENST00000437607 PDE3BQ13370 1112 aa17.23■□□□□ 0.35
PTPRF-208ENST00000437607 CRB1P82279 1406 aa17.22■□□□□ 0.35
PTPRF-208ENST00000437607 MON2Q7Z3U7 1717 aa17.22■□□□□ 0.35
PTPRF-208ENST00000437607 CABP1Q9NZU7 370 aa17.22■□□□□ 0.35
PTPRF-208ENST00000437607 THRAP3Q9Y2W1 955 aaKnown RBP17.22■□□□□ 0.35
PTPRF-208ENST00000437607 L3MBTL2Q969R5 705 aa17.21■□□□□ 0.35
PTPRF-208ENST00000437607 AATKQ6ZMQ8 1374 aa17.2■□□□□ 0.34
PTPRF-208ENST00000437607 NLRP6P59044 892 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms