RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 PRR36Q9H6K5 1346 aa23.65■■□□□ 1.38
TTC28-202ENST00000431039 FAM83GA6ND36 823 aa23.64■■□□□ 1.37
TTC28-202ENST00000431039 CRYBG1Q9Y4K1 1723 aa23.64■■□□□ 1.37
TTC28-202ENST00000431039 EIF3AQ14152 1382 aaKnown RBP23.64■■□□□ 1.37
TTC28-202ENST00000431039 COL14A1Q05707 1796 aaKnown RBP23.63■■□□□ 1.37
TTC28-202ENST00000431039 ITSN1Q15811 1721 aa23.63■■□□□ 1.37
TTC28-202ENST00000431039 GPRASP1Q5JY77 1395 aa23.63■■□□□ 1.37
TTC28-202ENST00000431039 DEFB132Q7Z7B7 95 aa23.62■■□□□ 1.37
TTC28-202ENST00000431039 A0A0G2JS52 829 aa23.61■■□□□ 1.37
TTC28-202ENST00000431039 MYT1Q01538 1121 aa23.61■■□□□ 1.37
TTC28-202ENST00000431039 WASLO00401 505 aaPredicted RBP23.6■■□□□ 1.37
TTC28-202ENST00000431039 KRT27Q7Z3Y8 459 aa23.59■■□□□ 1.37
TTC28-202ENST00000431039 STAC3Q96MF2 364 aa23.59■■□□□ 1.37
TTC28-202ENST00000431039 BTG4Q9NY30 223 aa23.59■■□□□ 1.37
TTC28-202ENST00000431039 SF3B2Q13435 895 aaKnown RBP23.58■■□□□ 1.37
TTC28-202ENST00000431039 NGDNQ8NEJ9 315 aaKnown RBP23.58■■□□□ 1.37
TTC28-202ENST00000431039 ONECUT3O60422 494 aaPredicted RBP23.57■■□□□ 1.36
TTC28-202ENST00000431039 PAK3O75914 559 aaPredicted RBP23.57■■□□□ 1.36
TTC28-202ENST00000431039 FAM98CQ17RN3 349 aaKnown RBP23.56■■□□□ 1.36
TTC28-202ENST00000431039 ATP7BP35670 1465 aa23.55■■□□□ 1.36
TTC28-202ENST00000431039 PHRF1Q9P1Y6 1649 aaKnown RBP23.54■■□□□ 1.36
TTC28-202ENST00000431039 TOPAZ1Q8N9V7 1692 aa23.51■■□□□ 1.35
TTC28-202ENST00000431039 NUDT16Q96DE0 195 aaKnown RBP23.51■■□□□ 1.35
TTC28-202ENST00000431039 RGPD1P0DJD0 1748 aa23.5■■□□□ 1.35
TTC28-202ENST00000431039 PRDM11Q9NQV5 511 aa23.5■■□□□ 1.35
TTC28-202ENST00000431039 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
TTC28-202ENST00000431039 THSD7AQ9UPZ6 1657 aa23.48■■□□□ 1.35
TTC28-202ENST00000431039 SPATA31A5Q5VU36 1347 aa23.48■■□□□ 1.35
TTC28-202ENST00000431039 SPATA31A7Q8IWB4 1347 aa23.48■■□□□ 1.35
TTC28-202ENST00000431039 FAM182BQ5T319 152 aa23.47■■□□□ 1.35
TTC28-202ENST00000431039 NUTM2GQ5VZR2 741 aa23.46■■□□□ 1.35
TTC28-202ENST00000431039 KIAA0232Q92628 1395 aa23.46■■□□□ 1.35
TTC28-202ENST00000431039 CDK19Q9BWU1 502 aa23.46■■□□□ 1.35
TTC28-202ENST00000431039 BAG6P46379 1132 aa23.45■■□□□ 1.34
TTC28-202ENST00000431039 CHRNA2Q15822 529 aa23.45■■□□□ 1.34
TTC28-202ENST00000431039 NBPF8Q3BBV2 869 aa23.45■■□□□ 1.34
TTC28-202ENST00000431039 TNS1Q9HBL0 1735 aaKnown RBP23.45■■□□□ 1.34
TTC28-202ENST00000431039 LRP5O75197 1615 aa23.42■■□□□ 1.34
TTC28-202ENST00000431039 STRN4Q9NRL3 753 aa23.42■■□□□ 1.34
TTC28-202ENST00000431039 ACEP12821 1306 aa23.41■■□□□ 1.34
TTC28-202ENST00000431039 NRKQ7Z2Y5 1582 aa23.41■■□□□ 1.34
TTC28-202ENST00000431039 PSDA5PKW4 1024 aaPredicted RBP23.41■■□□□ 1.34
TTC28-202ENST00000431039 ZC3H6P61129 1189 aaKnown RBP23.41■■□□□ 1.34
TTC28-202ENST00000431039 POLR3AO14802 1390 aaPredicted RBP23.4■■□□□ 1.34
TTC28-202ENST00000431039 EN1Q05925 392 aaPredicted RBP23.39■■□□□ 1.33
TTC28-202ENST00000431039 NBPF1Q3BBV0 1214 aa23.39■■□□□ 1.33
TTC28-202ENST00000431039 SPATA31A1Q5TZJ5 1347 aa23.38■■□□□ 1.33
TTC28-202ENST00000431039 CCDC61Q9Y6R9 512 aa23.38■■□□□ 1.33
TTC28-202ENST00000431039 QRICH2Q9H0J4 1663 aa23.38■■□□□ 1.33
TTC28-202ENST00000431039 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
TTC28-202ENST00000431039 PLEKHG3A1L390 1219 aa23.35■■□□□ 1.33
TTC28-202ENST00000431039 ABTB2Q8N961 1025 aa23.34■■□□□ 1.33
TTC28-202ENST00000431039 LMO7Q8WWI1 1683 aa23.34■■□□□ 1.33
TTC28-202ENST00000431039 PPIP5K1Q6PFW1 1433 aa23.33■■□□□ 1.33
TTC28-202ENST00000431039 SSH2Q76I76 1423 aa23.33■■□□□ 1.33
TTC28-202ENST00000431039 CAMTA1Q9Y6Y1 1673 aa23.33■■□□□ 1.33
TTC28-202ENST00000431039 EVA1CP58658 441 aa23.33■■□□□ 1.33
TTC28-202ENST00000431039 SRPK2P78362 688 aaKnown RBP23.33■■□□□ 1.33
TTC28-202ENST00000431039 DISP2A7MBM2 1401 aa23.31■■□□□ 1.32
TTC28-202ENST00000431039 CENPJQ9HC77 1338 aaPredicted RBP23.31■■□□□ 1.32
TTC28-202ENST00000431039 TRIM37O94972 964 aa23.3■■□□□ 1.32
TTC28-202ENST00000431039 CABP2Q9NPB3 220 aa23.3■■□□□ 1.32
TTC28-202ENST00000431039 EZH2Q15910 746 aaKnown RBP23.29■■□□□ 1.32
TTC28-202ENST00000431039 LARP1Q6PKG0 1096 aaKnown RBP23.29■■□□□ 1.32
TTC28-202ENST00000431039 USP19O94966 1318 aa23.29■■□□□ 1.32
TTC28-202ENST00000431039 R3HDM1Q15032 1099 aaKnown RBP23.28■■□□□ 1.32
TTC28-202ENST00000431039 FAM196AQ6ZSG2 479 aa23.28■■□□□ 1.32
TTC28-202ENST00000431039 CPDO75976 1380 aa23.27■■□□□ 1.32
TTC28-202ENST00000431039 ROCK2O75116 1388 aaKnown RBP23.26■■□□□ 1.31
TTC28-202ENST00000431039 ZBTB7CA1YPR0 619 aa23.25■■□□□ 1.31
TTC28-202ENST00000431039 PDE3BQ13370 1112 aa23.25■■□□□ 1.31
TTC28-202ENST00000431039 BARGINQ6ZT62 677 aa23.25■■□□□ 1.31
TTC28-202ENST00000431039 NLRP13Q86W25 1043 aa23.25■■□□□ 1.31
TTC28-202ENST00000431039 RREB1Q92766 1687 aa23.25■■□□□ 1.31
TTC28-202ENST00000431039 APBA3O96018 575 aa23.24■■□□□ 1.31
TTC28-202ENST00000431039 TCP11L2Q8N4U5 519 aa23.24■■□□□ 1.31
TTC28-202ENST00000431039 CARD11Q9BXL7 1154 aa23.24■■□□□ 1.31
TTC28-202ENST00000431039 PARP4Q9UKK3 1724 aaKnown RBP23.24■■□□□ 1.31
TTC28-202ENST00000431039 COL5A2P05997 1499 aaPredicted RBP23.24■■□□□ 1.31
TTC28-202ENST00000431039 TRPM1Q7Z4N2 1603 aa23.23■■□□□ 1.31
TTC28-202ENST00000431039 NUP188Q5SRE5 1749 aa23.23■■□□□ 1.31
TTC28-202ENST00000431039 GCP02774 474 aa23.23■■□□□ 1.31
TTC28-202ENST00000431039 CAMKK2Q96RR4 588 aa23.23■■□□□ 1.31
TTC28-202ENST00000431039 USP6P35125 1406 aa23.22■■□□□ 1.31
TTC28-202ENST00000431039 PIK3C2AO00443 1686 aa23.22■■□□□ 1.31
TTC28-202ENST00000431039 CABP1Q9NZU7 370 aa23.21■■□□□ 1.31
TTC28-202ENST00000431039 SLIT3O75094 1523 aa23.19■■□□□ 1.3
TTC28-202ENST00000431039 BRD4O60885 1362 aaPredicted RBP23.19■■□□□ 1.3
TTC28-202ENST00000431039 WNK3Q9BYP7 1800 aa23.18■■□□□ 1.3
TTC28-202ENST00000431039 NLRP6P59044 892 aa23.18■■□□□ 1.3
TTC28-202ENST00000431039 EIF4G2P78344 907 aaKnown RBP eCLIP23.18■■□□□ 1.3
TTC28-202ENST00000431039 AKAP12Q02952 1782 aa23.18■■□□□ 1.3
TTC28-202ENST00000431039 RGPD5Q99666 1765 aa23.18■■□□□ 1.3
TTC28-202ENST00000431039 COL18A1P39060 1754 aa23.17■■□□□ 1.3
TTC28-202ENST00000431039 PARD3Q8TEW0 1356 aa23.17■■□□□ 1.3
TTC28-202ENST00000431039 THRAP3Q9Y2W1 955 aaKnown RBP23.17■■□□□ 1.3
TTC28-202ENST00000431039 SBF2Q86WG5 1849 aa23.17■■□□□ 1.3
TTC28-202ENST00000431039 CRB1P82279 1406 aa23.16■■□□□ 1.3
TTC28-202ENST00000431039 LRRC37A3O60309 1634 aa23.16■■□□□ 1.3
TTC28-202ENST00000431039 EVC2Q86UK5 1308 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms