RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 GPKOWQ92917 476 aaPredicted RBP eCLIP11.89□□□□□ -0.51
CCDC88A-206ENST00000430086 PRKD2Q9BZL6 878 aa11.89□□□□□ -0.51
CCDC88A-206ENST00000430086 PRM3Q9NNZ6 103 aa11.89□□□□□ -0.51
CCDC88A-206ENST00000430086 NDUFB9Q9Y6M9 179 aa11.89□□□□□ -0.51
CCDC88A-206ENST00000430086 NBPF14Q5TI25 921 aa11.87□□□□□ -0.51
CCDC88A-206ENST00000430086 SPRYD7Q5W111 196 aa11.87□□□□□ -0.51
CCDC88A-206ENST00000430086 BAP1Q92560 729 aa11.86□□□□□ -0.51
CCDC88A-206ENST00000430086 GPR37L1O60883 481 aa11.85□□□□□ -0.51
CCDC88A-206ENST00000430086 UBTFP17480 764 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-206ENST00000430086 WNT7BP56706 349 aa11.85□□□□□ -0.51
CCDC88A-206ENST00000430086 ZNF511Q8NB15 262 aa11.85□□□□□ -0.51
CCDC88A-206ENST00000430086 PDXDC2PQ6P474 469 aa11.84□□□□□ -0.51
CCDC88A-206ENST00000430086 ZNF598Q86UK7 904 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-206ENST00000430086 TBC1D2BQ9UPU7 963 aa11.84□□□□□ -0.51
CCDC88A-206ENST00000430086 COG6Q9Y2V7 657 aa11.84□□□□□ -0.51
CCDC88A-206ENST00000430086 SH3BP2P78314 561 aa11.83□□□□□ -0.52
CCDC88A-206ENST00000430086 SKOR1P84550 965 aa11.82□□□□□ -0.52
CCDC88A-206ENST00000430086 LINC01559Q495D7 138 aa11.82□□□□□ -0.52
CCDC88A-206ENST00000430086 GDPD2Q9HCC8 539 aa11.82□□□□□ -0.52
CCDC88A-206ENST00000430086 GPSM3Q9Y4H4 160 aa11.82□□□□□ -0.52
CCDC88A-206ENST00000430086 RAD21O60216 631 aa11.81□□□□□ -0.52
CCDC88A-206ENST00000430086 SH3BP5LQ7L8J4 393 aa11.8□□□□□ -0.52
CCDC88A-206ENST00000430086 POM121Q96HA1 1249 aa11.8□□□□□ -0.52
CCDC88A-206ENST00000430086 ZNF697Q5TEC3 545 aa11.79□□□□□ -0.52
CCDC88A-206ENST00000430086 SH3RF1Q7Z6J0 888 aa11.79□□□□□ -0.52
CCDC88A-206ENST00000430086 BPHLQ86WA6 291 aaPredicted RBP11.79□□□□□ -0.52
CCDC88A-206ENST00000430086 PTK2Q05397 1052 aa11.78□□□□□ -0.52
CCDC88A-206ENST00000430086 A6NJR5 290 aa11.77□□□□□ -0.53
CCDC88A-206ENST00000430086 IRF5Q13568 498 aa11.77□□□□□ -0.53
CCDC88A-206ENST00000430086 FOXJ1Q92949 421 aa11.77□□□□□ -0.53
CCDC88A-206ENST00000430086 WNT7AO00755 349 aa11.76□□□□□ -0.53
CCDC88A-206ENST00000430086 ABL2P42684 1182 aa11.76□□□□□ -0.53
CCDC88A-206ENST00000430086 RC3H1Q5TC82 1133 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-206ENST00000430086 ERICH6Q7L0X2 663 aa11.76□□□□□ -0.53
CCDC88A-206ENST00000430086 CLUAP1Q96AJ1 413 aa11.76□□□□□ -0.53
CCDC88A-206ENST00000430086 ZBBXA8MT70 800 aa11.75□□□□□ -0.53
CCDC88A-206ENST00000430086 VARSP26640 1264 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-206ENST00000430086 C4orf48Q5BLP8 95 aa11.75□□□□□ -0.53
CCDC88A-206ENST00000430086 OCSTAMPQ9BR26 566 aa11.75□□□□□ -0.53
CCDC88A-206ENST00000430086 ARHGAP9Q9BRR9 750 aa11.75□□□□□ -0.53
CCDC88A-206ENST00000430086 AGERQ15109 404 aa11.74□□□□□ -0.53
CCDC88A-206ENST00000430086 PKD2L1Q9P0L9 805 aa11.74□□□□□ -0.53
CCDC88A-206ENST00000430086 FBXO45P0C2W1 286 aa11.73□□□□□ -0.53
CCDC88A-206ENST00000430086 NR1H3Q13133 447 aa11.73□□□□□ -0.53
CCDC88A-206ENST00000430086 C1QTNF2Q9BXJ5 285 aa11.73□□□□□ -0.53
CCDC88A-206ENST00000430086 GDF9O60383 454 aa11.72□□□□□ -0.53
CCDC88A-206ENST00000430086 WASHC4Q2M389 1173 aa11.72□□□□□ -0.53
CCDC88A-206ENST00000430086 WWC1Q8IX03 1113 aa11.72□□□□□ -0.53
CCDC88A-206ENST00000430086 EHBP1Q8NDI1 1231 aa11.72□□□□□ -0.53
CCDC88A-206ENST00000430086 FNBP4Q8N3X1 1017 aaPredicted RBP11.71□□□□□ -0.53
CCDC88A-206ENST00000430086 ZMYND15Q9H091 742 aa11.71□□□□□ -0.53
CCDC88A-206ENST00000430086 MAGEB6P1A0A0J9YX57 407 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 SIAH2O43255 324 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PRR20EP86478 221 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PRR20CP86479 221 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PRR20DP86480 221 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PRR20BP86481 221 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PRR20AP86496 221 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 TRIM67Q6ZTA4 783 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 ZBTB33Q86T24 672 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 C14orf37Q86TY3 774 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 PROSER2Q86WR7 435 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 FAM174AQ8TBP5 190 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 MRGPRX2Q96LB1 330 aa11.7□□□□□ -0.54
CCDC88A-206ENST00000430086 FOXC1Q12948 553 aa11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 ERFEQ4G0M1 354 aa11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 TRMT44Q8IYL2 757 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 MPNDQ8N594 471 aa11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 ADAM32Q8TC27 787 aa11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 CARD14Q9BXL6 1004 aa11.69□□□□□ -0.54
CCDC88A-206ENST00000430086 ZNF330Q9Y3S2 320 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-206ENST00000430086 VAC14Q08AM6 782 aa11.66□□□□□ -0.54
CCDC88A-206ENST00000430086 MCCD1P59942 119 aaPredicted RBP11.65□□□□□ -0.54
CCDC88A-206ENST00000430086 SNIP1Q8TAD8 396 aaKnown RBP11.65□□□□□ -0.54
CCDC88A-206ENST00000430086 ZNF592Q92610 1267 aa11.65□□□□□ -0.54
CCDC88A-206ENST00000430086 CDK15Q96Q40 435 aa11.65□□□□□ -0.54
CCDC88A-206ENST00000430086 TNFRSF10AO00220 468 aa11.64□□□□□ -0.55
CCDC88A-206ENST00000430086 TOR4AQ9NXH8 423 aa11.64□□□□□ -0.55
CCDC88A-206ENST00000430086 CDV3Q9UKY7 258 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-206ENST00000430086 MAP4K5Q9Y4K4 846 aa11.64□□□□□ -0.55
CCDC88A-206ENST00000430086 TRAK2O60296 914 aa11.63□□□□□ -0.55
CCDC88A-206ENST00000430086 SOX11P35716 441 aa11.63□□□□□ -0.55
CCDC88A-206ENST00000430086 EIF4G2P78344 907 aaKnown RBP eCLIP11.63□□□□□ -0.55
CCDC88A-206ENST00000430086 SLC10A4Q96EP9 437 aa11.63□□□□□ -0.55
CCDC88A-206ENST00000430086 PDZRN3Q9UPQ7 1066 aa11.63□□□□□ -0.55
CCDC88A-206ENST00000430086 DZIP3Q86Y13 1208 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-206ENST00000430086 CYP4X1Q8N118 509 aa11.62□□□□□ -0.55
CCDC88A-206ENST00000430086 TIMELESSQ9UNS1 1208 aa11.62□□□□□ -0.55
CCDC88A-206ENST00000430086 TLL2Q9Y6L7 1015 aa11.61□□□□□ -0.55
CCDC88A-206ENST00000430086 PCDHB9Q9Y5E1 797 aa11.6□□□□□ -0.55
CCDC88A-206ENST00000430086 TTC24A2A3L6 582 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-206ENST00000430086 POM121CA8CG34 1229 aa11.58□□□□□ -0.56
CCDC88A-206ENST00000430086 NBPF20Q3BBV1 942 aa11.58□□□□□ -0.56
CCDC88A-206ENST00000430086 VASH1Q7L8A9 365 aaPredicted RBP11.58□□□□□ -0.56
CCDC88A-206ENST00000430086 ADH1CP00326 375 aa11.57□□□□□ -0.56
CCDC88A-206ENST00000430086 ALDH1A1P00352 501 aa11.57□□□□□ -0.56
CCDC88A-206ENST00000430086 GRM5P41594 1212 aa11.57□□□□□ -0.56
CCDC88A-206ENST00000430086 ARID5BQ14865 1188 aa11.57□□□□□ -0.56
CCDC88A-206ENST00000430086 ALG2Q9H553 416 aa11.57□□□□□ -0.56
CCDC88A-206ENST00000430086 NRG2O14511 850 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms