RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 CABP2Q9NPB3 220 aa17.22■□□□□ 0.35
USP42-203ENST00000426246 NSD3Q9BZ95 1437 aa17.21■□□□□ 0.35
USP42-203ENST00000426246 ANKRD36BQ8N2N9 1353 aa17.21■□□□□ 0.35
USP42-203ENST00000426246 DUSP27Q5VZP5 1158 aa17.21■□□□□ 0.35
USP42-203ENST00000426246 FTSJ3Q8IY81 847 aaKnown RBP17.21■□□□□ 0.35
USP42-203ENST00000426246 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
USP42-203ENST00000426246 SRPK2P78362 688 aaKnown RBP17.2■□□□□ 0.34
USP42-203ENST00000426246 WAPLQ7Z5K2 1190 aa17.2■□□□□ 0.34
USP42-203ENST00000426246 INSRP06213 1382 aa17.19■□□□□ 0.34
USP42-203ENST00000426246 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
USP42-203ENST00000426246 FAM161AQ3B820 660 aa17.19■□□□□ 0.34
USP42-203ENST00000426246 FOXD4L1Q9NU39 408 aa17.19■□□□□ 0.34
USP42-203ENST00000426246 NINLQ9Y2I6 1382 aa17.18■□□□□ 0.34
USP42-203ENST00000426246 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
USP42-203ENST00000426246 BLMP54132 1417 aaPredicted RBP17.18■□□□□ 0.34
USP42-203ENST00000426246 PTPRUQ92729 1446 aa17.18■□□□□ 0.34
USP42-203ENST00000426246 IGHDP01880 384 aa17.18■□□□□ 0.34
USP42-203ENST00000426246 FBLN1P23142 703 aa17.18■□□□□ 0.34
USP42-203ENST00000426246 HDGFP51858 240 aaKnown RBP17.18■□□□□ 0.34
USP42-203ENST00000426246 TSR2Q969E8 191 aaKnown RBP17.18■□□□□ 0.34
USP42-203ENST00000426246 SIRT1Q96EB6 747 aa17.17■□□□□ 0.34
USP42-203ENST00000426246 ADGRB2O60241 1585 aa17.17■□□□□ 0.34
USP42-203ENST00000426246 A0A1W2PP64 1363 aa17.17■□□□□ 0.34
USP42-203ENST00000426246 CENPQQ7L2Z9 268 aaPredicted RBP17.17■□□□□ 0.34
USP42-203ENST00000426246 RNF123Q5XPI4 1314 aa17.17■□□□□ 0.34
USP42-203ENST00000426246 ANKRD26Q9UPS8 1709 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 ROBO2Q9HCK4 1378 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 DIP2AQ14689 1571 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 POGKQ9P215 609 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 ATAD2Q6PL18 1390 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 MTHFSP49914 203 aa17.16■□□□□ 0.34
USP42-203ENST00000426246 MFAP1P55081 439 aaKnown RBP17.16■□□□□ 0.34
USP42-203ENST00000426246 UPF2Q9HAU5 1272 aaKnown RBP17.15■□□□□ 0.34
USP42-203ENST00000426246 APBB1O00213 710 aa17.15■□□□□ 0.34
USP42-203ENST00000426246 GGNBP2Q9H3C7 697 aa17.15■□□□□ 0.34
USP42-203ENST00000426246 SHPRHQ149N8 1683 aa17.15■□□□□ 0.34
USP42-203ENST00000426246 SEC24BO95487 1268 aa17.15■□□□□ 0.34
USP42-203ENST00000426246 XRN1Q8IZH2 1706 aaKnown RBP17.15■□□□□ 0.34
USP42-203ENST00000426246 NUTM2FA1L443 756 aa17.14■□□□□ 0.33
USP42-203ENST00000426246 TXNDC2Q86VQ3 553 aa17.14■□□□□ 0.33
USP42-203ENST00000426246 TCP11L2Q8N4U5 519 aa17.14■□□□□ 0.33
USP42-203ENST00000426246 CDK19Q9BWU1 502 aa17.14■□□□□ 0.33
USP42-203ENST00000426246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.14■□□□□ 0.33
USP42-203ENST00000426246 ITPRIPQ8IWB1 547 aa17.13■□□□□ 0.33
USP42-203ENST00000426246 MS4A1P11836 297 aa17.13■□□□□ 0.33
USP42-203ENST00000426246 TPRNQ4KMQ1 711 aa17.13■□□□□ 0.33
USP42-203ENST00000426246 GSE1Q14687 1217 aa17.12■□□□□ 0.33
USP42-203ENST00000426246 TOPAZ1Q8N9V7 1692 aa17.12■□□□□ 0.33
USP42-203ENST00000426246 SLFN5Q08AF3 891 aa17.12■□□□□ 0.33
USP42-203ENST00000426246 KIF20BQ96Q89 1820 aa17.11■□□□□ 0.33
USP42-203ENST00000426246 HSP90AA1P07900 732 aaKnown RBP17.11■□□□□ 0.33
USP42-203ENST00000426246 THEMISQ8N1K5 641 aaPredicted RBP17.11■□□□□ 0.33
USP42-203ENST00000426246 SETD1BQ9UPS6 1966 aaKnown RBP17.11■□□□□ 0.33
USP42-203ENST00000426246 ATP7BP35670 1465 aa17.1■□□□□ 0.33
USP42-203ENST00000426246 SMC4Q9NTJ3 1288 aa17.1■□□□□ 0.33
USP42-203ENST00000426246 AKAP12Q02952 1782 aa17.1■□□□□ 0.33
USP42-203ENST00000426246 NSD2O96028 1365 aa17.09■□□□□ 0.33
USP42-203ENST00000426246 MON2Q7Z3U7 1717 aa17.09■□□□□ 0.33
USP42-203ENST00000426246 PTCH1Q13635 1447 aa17.09■□□□□ 0.33
USP42-203ENST00000426246 CFAP53Q96M91 514 aa17.09■□□□□ 0.33
USP42-203ENST00000426246 CPSF1Q10570 1443 aaKnown RBP17.09■□□□□ 0.33
USP42-203ENST00000426246 WASLO00401 505 aaPredicted RBP17.08■□□□□ 0.33
USP42-203ENST00000426246 EID1Q9Y6B2 187 aa17.08■□□□□ 0.33
USP42-203ENST00000426246 CGNL1Q0VF96 1302 aa17.08■□□□□ 0.33
USP42-203ENST00000426246 SLC26A8Q96RN1 970 aa17.08■□□□□ 0.32
USP42-203ENST00000426246 TBX22Q9Y458 520 aa17.08■□□□□ 0.32
USP42-203ENST00000426246 E9PSI1 815 aa17.08■□□□□ 0.32
USP42-203ENST00000426246 POLR3AO14802 1390 aaPredicted RBP17.07■□□□□ 0.32
USP42-203ENST00000426246 CDC42BPGQ6DT37 1551 aa17.07■□□□□ 0.32
USP42-203ENST00000426246 WWC1Q8IX03 1113 aa17.07■□□□□ 0.32
USP42-203ENST00000426246 CABP1Q9NZU7 370 aa17.07■□□□□ 0.32
USP42-203ENST00000426246 CHD2O14647 1828 aaKnown RBP17.06■□□□□ 0.32
USP42-203ENST00000426246 MAPK8IP3Q9UPT6 1336 aa17.06■□□□□ 0.32
USP42-203ENST00000426246 RLBP1P12271 317 aa17.06■□□□□ 0.32
USP42-203ENST00000426246 C8orf34Q49A92 452 aa17.05■□□□□ 0.32
USP42-203ENST00000426246 NRKQ7Z2Y5 1582 aa17.05■□□□□ 0.32
USP42-203ENST00000426246 PRR36Q9H6K5 1346 aa17.04■□□□□ 0.32
USP42-203ENST00000426246 ITSN1Q15811 1721 aa17.04■□□□□ 0.32
USP42-203ENST00000426246 PPIP5K1Q6PFW1 1433 aa17.04■□□□□ 0.32
USP42-203ENST00000426246 C1orf115Q9H7X2 142 aa17.04■□□□□ 0.32
USP42-203ENST00000426246 HMOX1P09601 288 aa17.03■□□□□ 0.32
USP42-203ENST00000426246 BECN1Q14457 450 aa17.03■□□□□ 0.32
USP42-203ENST00000426246 FYB1O15117 783 aa17.03■□□□□ 0.32
USP42-203ENST00000426246 THUMPD2Q9BTF0 503 aaKnown RBP17.03■□□□□ 0.32
USP42-203ENST00000426246 PDZRN3Q9UPQ7 1066 aa17.02■□□□□ 0.32
USP42-203ENST00000426246 NCKAP5LQ9HCH0 1330 aa17.02■□□□□ 0.32
USP42-203ENST00000426246 TERF2IPQ9NYB0 399 aa17.02■□□□□ 0.32
USP42-203ENST00000426246 AMOTL2Q9Y2J4 779 aa17.02■□□□□ 0.31
USP42-203ENST00000426246 COL3A1P02461 1466 aaPredicted RBP17.01■□□□□ 0.31
USP42-203ENST00000426246 PCDHB15Q9Y5E8 787 aa17.01■□□□□ 0.31
USP42-203ENST00000426246 EXOSC9Q06265 439 aaKnown RBP17.01■□□□□ 0.31
USP42-203ENST00000426246 LNPKQ9C0E8 428 aa17.01■□□□□ 0.31
USP42-203ENST00000426246 RGPD8O14715 1765 aaPredicted RBP17.01■□□□□ 0.31
USP42-203ENST00000426246 PIK3R4Q99570 1358 aa17.01■□□□□ 0.31
USP42-203ENST00000426246 NKTRP30414 1462 aaKnown RBP17■□□□□ 0.31
USP42-203ENST00000426246 NUDT16Q96DE0 195 aaKnown RBP17■□□□□ 0.31
USP42-203ENST00000426246 EDC4Q6P2E9 1401 aaKnown RBP16.98■□□□□ 0.31
USP42-203ENST00000426246 ZNF521Q96K83 1311 aa16.98■□□□□ 0.31
USP42-203ENST00000426246 NALCNQ8IZF0 1738 aa16.98■□□□□ 0.31
USP42-203ENST00000426246 ZBTB7CA1YPR0 619 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms