RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 ITSN1Q15811 1721 aa12.53□□□□□ -0.4
HMGB4-201ENST00000425537 CD163L1Q9NR16 1453 aa12.53□□□□□ -0.4
HMGB4-201ENST00000425537 NUTM2FA1L443 756 aa12.52□□□□□ -0.41
HMGB4-201ENST00000425537 ADAMTS8Q9UP79 889 aa12.52□□□□□ -0.41
HMGB4-201ENST00000425537 SUPT16HQ9Y5B9 1047 aaKnown RBP12.52□□□□□ -0.41
HMGB4-201ENST00000425537 FKBP8Q14318 412 aa12.51□□□□□ -0.41
HMGB4-201ENST00000425537 MSH6P52701 1360 aa12.51□□□□□ -0.41
HMGB4-201ENST00000425537 CPSF1Q10570 1443 aaKnown RBP12.51□□□□□ -0.41
HMGB4-201ENST00000425537 PNNQ9H307 717 aaKnown RBP12.5□□□□□ -0.41
HMGB4-201ENST00000425537 ADGRL3Q9HAR2 1447 aa12.5□□□□□ -0.41
HMGB4-201ENST00000425537 AKAP12Q02952 1782 aa12.49□□□□□ -0.41
HMGB4-201ENST00000425537 MON2Q7Z3U7 1717 aa12.49□□□□□ -0.41
HMGB4-201ENST00000425537 FYB1O15117 783 aa12.49□□□□□ -0.41
HMGB4-201ENST00000425537 MTHFSP49914 203 aa12.49□□□□□ -0.41
HMGB4-201ENST00000425537 IQSEC2Q5JU85 1478 aa12.48□□□□□ -0.41
HMGB4-201ENST00000425537 ANKARQ7Z5J8 1434 aa12.48□□□□□ -0.41
HMGB4-201ENST00000425537 TOPAZ1Q8N9V7 1692 aa12.48□□□□□ -0.41
HMGB4-201ENST00000425537 PLEKHG3A1L390 1219 aa12.47□□□□□ -0.41
HMGB4-201ENST00000425537 TNNT2P45379 298 aaPredicted RBP12.47□□□□□ -0.41
HMGB4-201ENST00000425537 NCBP3Q53F19 620 aaKnown RBP12.47□□□□□ -0.41
HMGB4-201ENST00000425537 ILDR1Q86SU0 546 aaPredicted RBP12.47□□□□□ -0.41
HMGB4-201ENST00000425537 GGNBP2Q9H3C7 697 aa12.47□□□□□ -0.41
HMGB4-201ENST00000425537 ROBO1Q9Y6N7 1651 aa12.46□□□□□ -0.41
HMGB4-201ENST00000425537 ATF3P18847 181 aa12.46□□□□□ -0.41
HMGB4-201ENST00000425537 SHPRHQ149N8 1683 aa12.45□□□□□ -0.42
HMGB4-201ENST00000425537 FBXO41Q8TF61 875 aa12.45□□□□□ -0.42
HMGB4-201ENST00000425537 RUNDC1Q96C34 613 aa12.45□□□□□ -0.42
HMGB4-201ENST00000425537 COG3Q96JB2 828 aa12.45□□□□□ -0.42
HMGB4-201ENST00000425537 RGPD8O14715 1765 aaPredicted RBP12.45□□□□□ -0.42
HMGB4-201ENST00000425537 FMN2Q9NZ56 1722 aa12.45□□□□□ -0.42
HMGB4-201ENST00000425537 TOM1O60784 492 aa12.44□□□□□ -0.42
HMGB4-201ENST00000425537 GOLGA2Q08379 1002 aa12.44□□□□□ -0.42
HMGB4-201ENST00000425537 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.44□□□□□ -0.42
HMGB4-201ENST00000425537 DDX17Q92841 729 aaKnown RBP12.44□□□□□ -0.42
HMGB4-201ENST00000425537 C19orf44Q9H6X5 657 aa12.44□□□□□ -0.42
HMGB4-201ENST00000425537 MST1RQ04912 1400 aa12.44□□□□□ -0.42
HMGB4-201ENST00000425537 AATKQ6ZMQ8 1374 aa12.43□□□□□ -0.42
HMGB4-201ENST00000425537 TTC21AQ8NDW8 1320 aa12.43□□□□□ -0.42
HMGB4-201ENST00000425537 NEFMP07197 916 aa12.43□□□□□ -0.42
HMGB4-201ENST00000425537 PRR36Q9H6K5 1346 aa12.42□□□□□ -0.42
HMGB4-201ENST00000425537 SLAIN2Q9P270 581 aa12.42□□□□□ -0.42
HMGB4-201ENST00000425537 SALL2Q9Y467 1007 aaPredicted RBP12.42□□□□□ -0.42
HMGB4-201ENST00000425537 ACEP12821 1306 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 DIAPH1O60610 1272 aaKnown RBP12.41□□□□□ -0.42
HMGB4-201ENST00000425537 U2AF1L5P0DN76 240 aaPredicted RBP12.41□□□□□ -0.42
HMGB4-201ENST00000425537 USP6P35125 1406 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.42
HMGB4-201ENST00000425537 ORAI2Q96SN7 254 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 RCAN3Q9UKA8 241 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 NCOA3Q9Y6Q9 1424 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 PNPLA6Q8IY17 1366 aa12.41□□□□□ -0.42
HMGB4-201ENST00000425537 C1orf167Q5SNV9 1468 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 RNF123Q5XPI4 1314 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 NRKQ7Z2Y5 1582 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 E9PSI1 815 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 APAF1O14727 1248 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 HSPA1LP34931 641 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 XPCQ01831 940 aaPredicted RBP12.4□□□□□ -0.42
HMGB4-201ENST00000425537 CADPS2Q86UW7 1296 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 NGDNQ8NEJ9 315 aaKnown RBP12.4□□□□□ -0.42
HMGB4-201ENST00000425537 PPP4R2Q9NY27 417 aa12.4□□□□□ -0.42
HMGB4-201ENST00000425537 CDK12Q9NYV4 1490 aaPredicted RBP12.4□□□□□ -0.43
HMGB4-201ENST00000425537 TTC21BQ7Z4L5 1316 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 ZNF521Q96K83 1311 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 MAPK8IP3Q9UPT6 1336 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 DCCP43146 1447 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 CCDC27Q2M243 656 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 BRINP3Q76B58 766 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 CCDC146Q8IYE0 955 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 PHLPP1O60346 1717 aa12.39□□□□□ -0.43
HMGB4-201ENST00000425537 COL3A1P02461 1466 aaPredicted RBP12.39□□□□□ -0.43
HMGB4-201ENST00000425537 U2SURPO15042 1029 aaKnown RBP12.38□□□□□ -0.43
HMGB4-201ENST00000425537 ESCO1Q5FWF5 840 aa12.38□□□□□ -0.43
HMGB4-201ENST00000425537 NME9Q86XW9 330 aa12.38□□□□□ -0.43
HMGB4-201ENST00000425537 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.38□□□□□ -0.43
HMGB4-201ENST00000425537 MAP2P11137 1827 aaKnown RBP12.38□□□□□ -0.43
HMGB4-201ENST00000425537 PLEKHG5O94827 1062 aa12.37□□□□□ -0.43
HMGB4-201ENST00000425537 FCHSD2O94868 740 aa12.37□□□□□ -0.43
HMGB4-201ENST00000425537 WDR63Q8IWG1 891 aa12.37□□□□□ -0.43
HMGB4-201ENST00000425537 PMFBP1Q8TBY8 1022 aa12.37□□□□□ -0.43
HMGB4-201ENST00000425537 POLKQ9UBT6 870 aa12.37□□□□□ -0.43
HMGB4-201ENST00000425537 SLFN5Q08AF3 891 aa12.36□□□□□ -0.43
HMGB4-201ENST00000425537 TCP11L2Q8N4U5 519 aa12.36□□□□□ -0.43
HMGB4-201ENST00000425537 USP31Q70CQ4 1352 aa12.35□□□□□ -0.43
HMGB4-201ENST00000425537 CDCA7LQ96GN5 454 aa12.35□□□□□ -0.43
HMGB4-201ENST00000425537 OVOS2A0A0J9YW53 1432 aa12.35□□□□□ -0.43
HMGB4-201ENST00000425537 OVOS2Q6IE36 1432 aa12.35□□□□□ -0.43
HMGB4-201ENST00000425537 NHSL1Q5SYE7 1610 aa12.34□□□□□ -0.43
HMGB4-201ENST00000425537 PPM1GO15355 546 aaPredicted RBP12.34□□□□□ -0.43
HMGB4-201ENST00000425537 RRP1P56182 461 aaKnown RBP12.34□□□□□ -0.43
HMGB4-201ENST00000425537 WWC1Q8IX03 1113 aa12.34□□□□□ -0.43
HMGB4-201ENST00000425537 MYH16Q9H6N6 1097 aa12.34□□□□□ -0.43
HMGB4-201ENST00000425537 SSH2Q76I76 1423 aa12.34□□□□□ -0.43
HMGB4-201ENST00000425537 COL16A1Q07092 1604 aaPredicted RBP12.33□□□□□ -0.43
HMGB4-201ENST00000425537 SENP3-EIF4A1A0A087X0R7 540 aa12.33□□□□□ -0.44
HMGB4-201ENST00000425537 CALD1Q05682 793 aaKnown RBP12.33□□□□□ -0.44
HMGB4-201ENST00000425537 DUSP27Q5VZP5 1158 aa12.33□□□□□ -0.44
HMGB4-201ENST00000425537 TRMT2AQ8IZ69 625 aaKnown RBP12.33□□□□□ -0.44
HMGB4-201ENST00000425537 PHF8Q9UPP1 1060 aa12.33□□□□□ -0.44
HMGB4-201ENST00000425537 USP54Q70EL1 1684 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms