RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 NUTM2EB1AL46 878 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-205ENST00000424674 CTHP32929 405 aa6.48□□□□□ -1.37
SF3B1-205ENST00000424674 SH3BP2P78314 561 aa6.48□□□□□ -1.37
SF3B1-205ENST00000424674 NUTM2DQ5VT03 806 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-205ENST00000424674 NUTM2AQ8IVF1 878 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-205ENST00000424674 TSC1Q92574 1164 aa6.48□□□□□ -1.37
SF3B1-205ENST00000424674 RSPH6AQ9H0K4 717 aa6.48□□□□□ -1.37
SF3B1-205ENST00000424674 POTECB2RU33 542 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 ALDH1A1P00352 501 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 F12P00748 615 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-205ENST00000424674 QPCTQ16769 361 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 ZNF511Q8NB15 262 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 BAP1Q92560 729 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 PODXL2Q9NZ53 605 aa6.47□□□□□ -1.37
SF3B1-205ENST00000424674 SIAH2O43255 324 aa6.46□□□□□ -1.38
SF3B1-205ENST00000424674 LILRB3O75022 631 aa6.46□□□□□ -1.38
SF3B1-205ENST00000424674 HPS1Q92902 700 aa6.46□□□□□ -1.38
SF3B1-205ENST00000424674 GPBP1L1Q9HC44 474 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-205ENST00000424674 MAP10Q9P2G4 905 aa6.46□□□□□ -1.38
SF3B1-205ENST00000424674 DACH1Q9UI36 760 aa6.46□□□□□ -1.38
SF3B1-205ENST00000424674 PER1O15534 1290 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-205ENST00000424674 HELBQ8NG08 1087 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-205ENST00000424674 KDM4CQ9H3R0 1056 aa6.45□□□□□ -1.38
SF3B1-205ENST00000424674 VARSP26640 1264 aaKnown RBP6.44□□□□□ -1.38
SF3B1-205ENST00000424674 ZNF775Q96BV0 537 aaPredicted RBP6.44□□□□□ -1.38
SF3B1-205ENST00000424674 POLR3EQ9NVU0 708 aa6.44□□□□□ -1.38
SF3B1-205ENST00000424674 GMPR2Q9P2T1 348 aaKnown RBP6.44□□□□□ -1.38
SF3B1-205ENST00000424674 TLL2Q9Y6L7 1015 aa6.44□□□□□ -1.38
SF3B1-205ENST00000424674 WASF2Q9Y6W5 498 aa6.44□□□□□ -1.38
SF3B1-205ENST00000424674 RTL5Q5HYW3 569 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-205ENST00000424674 DDRGK1Q96HY6 314 aa6.43□□□□□ -1.38
SF3B1-205ENST00000424674 ATP13A2Q9NQ11 1180 aa6.43□□□□□ -1.38
SF3B1-205ENST00000424674 SH3D19Q5HYK7 790 aa6.42□□□□□ -1.38
SF3B1-205ENST00000424674 PLEKHG3A1L390 1219 aa6.41□□□□□ -1.38
SF3B1-205ENST00000424674 C11orf95C9JLR9 678 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-205ENST00000424674 SKIV2LQ15477 1246 aaKnown RBP6.41□□□□□ -1.38
SF3B1-205ENST00000424674 MPNDQ8N594 471 aa6.41□□□□□ -1.38
SF3B1-205ENST00000424674 FAM174AQ8TBP5 190 aa6.41□□□□□ -1.38
SF3B1-205ENST00000424674 FOXJ1Q92949 421 aa6.41□□□□□ -1.38
SF3B1-205ENST00000424674 FAM117AQ9C073 453 aa6.41□□□□□ -1.38
SF3B1-205ENST00000424674 TTBK1Q5TCY1 1321 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-205ENST00000424674 ARMC2Q8NEN0 867 aa6.4□□□□□ -1.38
SF3B1-205ENST00000424674 SENP2Q9HC62 589 aa6.4□□□□□ -1.38
SF3B1-205ENST00000424674 AGERQ15109 404 aa6.39□□□□□ -1.39
SF3B1-205ENST00000424674 NBPF14Q5TI25 921 aa6.39□□□□□ -1.39
SF3B1-205ENST00000424674 BPHLQ86WA6 291 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-205ENST00000424674 TRIM47Q96LD4 638 aa6.39□□□□□ -1.39
SF3B1-205ENST00000424674 ATP1B4Q9UN42 357 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-205ENST00000424674 CAPN5O15484 640 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-205ENST00000424674 NNTQ13423 1086 aa6.38□□□□□ -1.39
SF3B1-205ENST00000424674 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.38□□□□□ -1.39
SF3B1-205ENST00000424674 ADH1CP00326 375 aa6.37□□□□□ -1.39
SF3B1-205ENST00000424674 BMP1P13497 986 aa6.37□□□□□ -1.39
SF3B1-205ENST00000424674 CTDSPL2Q05D32 466 aa6.37□□□□□ -1.39
SF3B1-205ENST00000424674 C4orf48Q5BLP8 95 aa6.37□□□□□ -1.39
SF3B1-205ENST00000424674 KIFC2Q96AC6 838 aa6.37□□□□□ -1.39
SF3B1-205ENST00000424674 SNRPBP14678 240 aaKnown RBP6.36□□□□□ -1.39
SF3B1-205ENST00000424674 ARID5BQ14865 1188 aa6.36□□□□□ -1.39
SF3B1-205ENST00000424674 PPP2R2DQ66LE6 453 aa6.36□□□□□ -1.39
SF3B1-205ENST00000424674 SH3RF1Q7Z6J0 888 aa6.36□□□□□ -1.39
SF3B1-205ENST00000424674 PROCA1Q8NCQ7 364 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-205ENST00000424674 GPKOWQ92917 476 aaPredicted RBP eCLIP6.36□□□□□ -1.39
SF3B1-205ENST00000424674 CDK15Q96Q40 435 aa6.36□□□□□ -1.39
SF3B1-205ENST00000424674 NEUROD2Q15784 382 aa6.35□□□□□ -1.39
SF3B1-205ENST00000424674 FBXO31Q5XUX0 539 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-205ENST00000424674 SH3BP5LQ7L8J4 393 aa6.35□□□□□ -1.39
SF3B1-205ENST00000424674 TRIM46Q7Z4K8 759 aa6.35□□□□□ -1.39
SF3B1-205ENST00000424674 C1QTNF2Q9BXJ5 285 aa6.35□□□□□ -1.39
SF3B1-205ENST00000424674 MAGEB6P1A0A0J9YX57 407 aa6.34□□□□□ -1.39
SF3B1-205ENST00000424674 TIMP2P16035 220 aa6.34□□□□□ -1.39
SF3B1-205ENST00000424674 WDR4P57081 412 aaKnown RBP6.34□□□□□ -1.39
SF3B1-205ENST00000424674 TREML4Q6UXN2 200 aa6.34□□□□□ -1.39
SF3B1-205ENST00000424674 LRRN4Q8WUT4 740 aa6.34□□□□□ -1.39
SF3B1-205ENST00000424674 AP1G2O75843 785 aa6.33□□□□□ -1.4
SF3B1-205ENST00000424674 NR5A1Q13285 461 aa6.33□□□□□ -1.4
SF3B1-205ENST00000424674 NPM2Q86SE8 214 aaKnown RBP6.33□□□□□ -1.4
SF3B1-205ENST00000424674 TRMT44Q8IYL2 757 aaKnown RBP6.33□□□□□ -1.4
SF3B1-205ENST00000424674 CARD14Q9BXL6 1004 aa6.33□□□□□ -1.4
SF3B1-205ENST00000424674 MAP4K5Q9Y4K4 846 aa6.33□□□□□ -1.4
SF3B1-205ENST00000424674 ZC3H4Q9UPT8 1303 aaKnown RBP6.32□□□□□ -1.4
SF3B1-205ENST00000424674 ZIC2O95409 532 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-205ENST00000424674 NR3C2P08235 984 aa6.32□□□□□ -1.4
SF3B1-205ENST00000424674 FSHRP23945 695 aa6.32□□□□□ -1.4
SF3B1-205ENST00000424674 KLF16Q9BXK1 252 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-205ENST00000424674 FKBPLQ9UIM3 349 aa6.32□□□□□ -1.4
SF3B1-205ENST00000424674 WFS1O76024 890 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 USP17L8P0C7I0 530 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 GRM5P41594 1212 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 BRPF1P55201 1214 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-205ENST00000424674 NR6A1Q15406 480 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 ERFEQ4G0M1 354 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 LCE2AQ5TA79 106 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-205ENST00000424674 MRPL14Q6P1L8 145 aaKnown RBP6.31□□□□□ -1.4
SF3B1-205ENST00000424674 PDXDC2PQ6P474 469 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 VASH1Q7L8A9 365 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-205ENST00000424674 IL27Q8NEV9 243 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 ARHGAP9Q9BRR9 750 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 GOPCQ9HD26 462 aa6.31□□□□□ -1.4
SF3B1-205ENST00000424674 RFC5P40937 340 aa6.3□□□□□ -1.4
SF3B1-205ENST00000424674 NFX1Q12986 1120 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms