RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 E9PCH4 1651 aa12.34□□□□□ -0.43
USP54-205ENST00000424265 PPRC1Q5VV67 1664 aaKnown RBP12.34□□□□□ -0.43
USP54-205ENST00000424265 PRDM4Q9UKN5 801 aa12.34□□□□□ -0.43
USP54-205ENST00000424265 BRD4O60885 1362 aaPredicted RBP12.34□□□□□ -0.43
USP54-205ENST00000424265 MSH6P52701 1360 aa12.34□□□□□ -0.43
USP54-205ENST00000424265 NEURL4Q96JN8 1562 aa12.34□□□□□ -0.43
USP54-205ENST00000424265 ESCO1Q5FWF5 840 aa12.34□□□□□ -0.43
USP54-205ENST00000424265 CLTCQ00610 1675 aaKnown RBP12.34□□□□□ -0.43
USP54-205ENST00000424265 SBNO2Q9Y2G9 1366 aa12.33□□□□□ -0.43
USP54-205ENST00000424265 COL17A1Q9UMD9 1497 aaPredicted RBP12.33□□□□□ -0.44
USP54-205ENST00000424265 KCNA6P17658 529 aa12.33□□□□□ -0.44
USP54-205ENST00000424265 WWC1Q8IX03 1113 aa12.33□□□□□ -0.44
USP54-205ENST00000424265 CLTCL1P53675 1640 aa12.33□□□□□ -0.44
USP54-205ENST00000424265 MSNP26038 577 aaKnown RBP12.33□□□□□ -0.44
USP54-205ENST00000424265 FRMPD1Q5SYB0 1578 aa12.32□□□□□ -0.44
USP54-205ENST00000424265 U2AF1L5P0DN76 240 aaPredicted RBP12.32□□□□□ -0.44
USP54-205ENST00000424265 U2AF1Q01081 240 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP54-205ENST00000424265 CABP1Q9NZU7 370 aa12.32□□□□□ -0.44
USP54-205ENST00000424265 SYNMO15061 1565 aa12.32□□□□□ -0.44
USP54-205ENST00000424265 PIK3C2GO75747 1445 aa12.32□□□□□ -0.44
USP54-205ENST00000424265 CSB-PGBD3P0DP91 1061 aa12.32□□□□□ -0.44
USP54-205ENST00000424265 MAPK8IP2Q13387 824 aaPredicted RBP12.32□□□□□ -0.44
USP54-205ENST00000424265 NPHP4O75161 1426 aaPredicted RBP12.31□□□□□ -0.44
USP54-205ENST00000424265 PDE4AP27815 886 aa12.31□□□□□ -0.44
USP54-205ENST00000424265 SECISBP2LQ93073 1101 aaKnown RBP12.31□□□□□ -0.44
USP54-205ENST00000424265 WAPLQ7Z5K2 1190 aa12.3□□□□□ -0.44
USP54-205ENST00000424265 RTF1Q92541 710 aaKnown RBP12.3□□□□□ -0.44
USP54-205ENST00000424265 MYH16Q9H6N6 1097 aa12.3□□□□□ -0.44
USP54-205ENST00000424265 KIF13AQ9H1H9 1805 aa12.3□□□□□ -0.44
USP54-205ENST00000424265 SPATA31D1Q6ZQQ2 1576 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 SOX12O15370 315 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 PDE3BQ13370 1112 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 PPP4R3BQ5MIZ7 849 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 KIAA1211Q6ZU35 1233 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 SLC12A5Q9H2X9 1139 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 PHF8Q9UPP1 1060 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 SAMD1Q6SPF0 538 aaPredicted RBP12.29□□□□□ -0.44
USP54-205ENST00000424265 BCORL1Q5H9F3 1711 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 LAMC1P11047 1609 aa12.29□□□□□ -0.44
USP54-205ENST00000424265 DIAPH1O60610 1272 aaKnown RBP12.29□□□□□ -0.44
USP54-205ENST00000424265 FRAT2O75474 233 aaPredicted RBP12.28□□□□□ -0.44
USP54-205ENST00000424265 NLRP6P59044 892 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.28□□□□□ -0.44
USP54-205ENST00000424265 C19orf44Q9H6X5 657 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 NCKAP5LQ9HCH0 1330 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 E9PSI1 815 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 MS4A1P11836 297 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 KCNH5Q8NCM2 988 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 TTC21AQ8NDW8 1320 aa12.28□□□□□ -0.44
USP54-205ENST00000424265 CFAP65Q6ZU64 1925 aaKnown RBP12.28□□□□□ -0.44
USP54-205ENST00000424265 FAM135BQ49AJ0 1406 aa12.27□□□□□ -0.44
USP54-205ENST00000424265 SLC4A3P48751 1232 aa12.27□□□□□ -0.44
USP54-205ENST00000424265 ABTB2Q8N961 1025 aa12.27□□□□□ -0.44
USP54-205ENST00000424265 ANKRD36BQ8N2N9 1353 aa12.27□□□□□ -0.44
USP54-205ENST00000424265 NSD3Q9BZ95 1437 aa12.27□□□□□ -0.45
USP54-205ENST00000424265 PTMAP06454 111 aaKnown RBP12.27□□□□□ -0.45
USP54-205ENST00000424265 SMG6Q86US8 1419 aaKnown RBP12.27□□□□□ -0.45
USP54-205ENST00000424265 CNPY4Q8N129 248 aa12.26□□□□□ -0.45
USP54-205ENST00000424265 AEBP1Q8IUX7 1158 aa12.26□□□□□ -0.45
USP54-205ENST00000424265 BECN1Q14457 450 aa12.26□□□□□ -0.45
USP54-205ENST00000424265 PREX1Q8TCU6 1659 aa12.26□□□□□ -0.45
USP54-205ENST00000424265 LTKP29376 864 aa12.25□□□□□ -0.45
USP54-205ENST00000424265 DISP3Q9P2K9 1392 aa12.25□□□□□ -0.45
USP54-205ENST00000424265 ESPNB1AK53 854 aa12.25□□□□□ -0.45
USP54-205ENST00000424265 TESK2Q96S53 571 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 GGNBP2Q9H3C7 697 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 PMFBP1Q8TBY8 1022 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 TNNT3P45378 269 aaPredicted RBP12.24□□□□□ -0.45
USP54-205ENST00000424265 SETBP1Q9Y6X0 1596 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 PTPRMP28827 1452 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 FER1L4A9Z1Z3 1794 aa12.24□□□□□ -0.45
USP54-205ENST00000424265 NPHP3Q7Z494 1330 aa12.23□□□□□ -0.45
USP54-205ENST00000424265 ZNF771Q7L3S4 317 aaPredicted RBP12.23□□□□□ -0.45
USP54-205ENST00000424265 TOM1O60784 492 aa12.23□□□□□ -0.45
USP54-205ENST00000424265 PPP2R1AP30153 589 aa12.23□□□□□ -0.45
USP54-205ENST00000424265 HSPA2P54652 639 aa12.23□□□□□ -0.45
USP54-205ENST00000424265 CLGNO14967 610 aa12.22□□□□□ -0.45
USP54-205ENST00000424265 MROH1Q8NDA8 1641 aa12.22□□□□□ -0.45
USP54-205ENST00000424265 GZF1Q9H116 711 aaPredicted RBP12.22□□□□□ -0.45
USP54-205ENST00000424265 MROH2AA6NES4 1674 aa12.22□□□□□ -0.45
USP54-205ENST00000424265 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
USP54-205ENST00000424265 RIMS1Q86UR5 1692 aaKnown RBP12.22□□□□□ -0.45
USP54-205ENST00000424265 EVA1CP58658 441 aa12.22□□□□□ -0.45
USP54-205ENST00000424265 LETM1O95202 739 aaPredicted RBP12.21□□□□□ -0.45
USP54-205ENST00000424265 UTP14CQ5TAP6 766 aaKnown RBP12.21□□□□□ -0.45
USP54-205ENST00000424265 NPC1L1Q9UHC9 1359 aa12.21□□□□□ -0.45
USP54-205ENST00000424265 NEUROD2Q15784 382 aa12.21□□□□□ -0.46
USP54-205ENST00000424265 ASXL1Q8IXJ9 1541 aa12.2□□□□□ -0.46
USP54-205ENST00000424265 RUNDC1Q96C34 613 aa12.2□□□□□ -0.46
USP54-205ENST00000424265 MADDQ8WXG6 1647 aa12.2□□□□□ -0.46
USP54-205ENST00000424265 KIF20AO95235 890 aa12.19□□□□□ -0.46
USP54-205ENST00000424265 FAM193AP78312 1265 aa12.19□□□□□ -0.46
USP54-205ENST00000424265 CEP170BQ9Y4F5 1589 aaPredicted RBP12.19□□□□□ -0.46
USP54-205ENST00000424265 GTPBP4Q9BZE4 634 aaKnown RBP12.19□□□□□ -0.46
USP54-205ENST00000424265 CGNQ9P2M7 1197 aaKnown RBP12.19□□□□□ -0.46
USP54-205ENST00000424265 DIP2AQ14689 1571 aa12.19□□□□□ -0.46
USP54-205ENST00000424265 KIAA1210Q9ULL0 1709 aa12.19□□□□□ -0.46
USP54-205ENST00000424265 MTHFSP49914 203 aa12.19□□□□□ -0.46
USP54-205ENST00000424265 R3HCC1Q9Y3T6 440 aaKnown RBP12.19□□□□□ -0.46
USP54-205ENST00000424265 SETD1BQ9UPS6 1966 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms