RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 RIMS2Q9UQ26 1411 aa15.37■□□□□ 0.05
PTPRN-204ENST00000423636 AEBP1Q8IUX7 1158 aa15.37■□□□□ 0.05
PTPRN-204ENST00000423636 KDM2BQ8NHM5 1336 aa15.37■□□□□ 0.05
PTPRN-204ENST00000423636 SSH1Q8WYL5 1049 aa15.37■□□□□ 0.05
PTPRN-204ENST00000423636 KRT24Q2M2I5 525 aa15.36■□□□□ 0.05
PTPRN-204ENST00000423636 SPRYD3Q8NCJ5 442 aa15.36■□□□□ 0.05
PTPRN-204ENST00000423636 CENPQQ7L2Z9 268 aaPredicted RBP15.36■□□□□ 0.05
PTPRN-204ENST00000423636 MIS18AQ9NYP9 233 aa15.36■□□□□ 0.05
PTPRN-204ENST00000423636 SBNO2Q9Y2G9 1366 aa15.36■□□□□ 0.05
PTPRN-204ENST00000423636 INSRP06213 1382 aa15.35■□□□□ 0.05
PTPRN-204ENST00000423636 TSPYL6Q8N831 410 aa15.35■□□□□ 0.05
PTPRN-204ENST00000423636 NOB1Q9ULX3 412 aaKnown RBP15.35■□□□□ 0.05
PTPRN-204ENST00000423636 CFAP74Q9C0B2 1584 aa15.34■□□□□ 0.05
PTPRN-204ENST00000423636 WASLO00401 505 aaPredicted RBP15.34■□□□□ 0.05
PTPRN-204ENST00000423636 PTPRMP28827 1452 aa15.34■□□□□ 0.05
PTPRN-204ENST00000423636 LTV1Q96GA3 475 aaPredicted RBP15.33■□□□□ 0.05
PTPRN-204ENST00000423636 PLEKHF1Q96S99 279 aa15.33■□□□□ 0.05
PTPRN-204ENST00000423636 KIAA1210Q9ULL0 1709 aa15.33■□□□□ 0.05
PTPRN-204ENST00000423636 CLTCQ00610 1675 aaKnown RBP15.33■□□□□ 0.05
PTPRN-204ENST00000423636 ARHGEF28Q8N1W1 1705 aaKnown RBP15.32■□□□□ 0.04
PTPRN-204ENST00000423636 PRR36Q9H6K5 1346 aa15.32■□□□□ 0.04
PTPRN-204ENST00000423636 C8orf34Q49A92 452 aa15.32■□□□□ 0.04
PTPRN-204ENST00000423636 PREX1Q8TCU6 1659 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 MYH16Q9H6N6 1097 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 ALKQ9UM73 1620 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 TRIM27P14373 513 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 ABCC11Q96J66 1382 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 TMEM131LA2VDJ0 1609 aa15.31■□□□□ 0.04
PTPRN-204ENST00000423636 A2ML1A8K2U0 1454 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 HSP90AB2PQ58FF8 381 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 COG3Q96JB2 828 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 DIP2BQ9P265 1576 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 SETBP1Q9Y6X0 1596 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 CD163L1Q9NR16 1453 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 NECTIN2Q92692 538 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 PPIP5K1Q6PFW1 1433 aa15.3■□□□□ 0.04
PTPRN-204ENST00000423636 ATAD2Q6PL18 1390 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 APBB1O00213 710 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 MCM10Q7L590 875 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 NEFMP07197 916 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 TMEM57Q8N5G2 664 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 ZNF428Q96B54 188 aa15.29■□□□□ 0.04
PTPRN-204ENST00000423636 SULT6B1Q6IMI4 303 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 DAXXQ9UER7 740 aaPredicted RBP15.28■□□□□ 0.04
PTPRN-204ENST00000423636 PDZRN3Q9UPQ7 1066 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 ZC3H13Q5T200 1668 aaKnown RBP15.28■□□□□ 0.04
PTPRN-204ENST00000423636 WDR63Q8IWG1 891 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 DZIP1LQ8IYY4 767 aaKnown RBP15.28■□□□□ 0.04
PTPRN-204ENST00000423636 ARHGAP31Q2M1Z3 1444 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 FOXO3O43524 673 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 CCDC61Q9Y6R9 512 aa15.28■□□□□ 0.04
PTPRN-204ENST00000423636 DEKP35659 375 aaKnown RBP15.27■□□□□ 0.04
PTPRN-204ENST00000423636 XPCQ01831 940 aaPredicted RBP15.27■□□□□ 0.04
PTPRN-204ENST00000423636 ROBO2Q9HCK4 1378 aa15.27■□□□□ 0.04
PTPRN-204ENST00000423636 FAM161AQ3B820 660 aa15.27■□□□□ 0.03
PTPRN-204ENST00000423636 ZKSCAN2Q63HK3 967 aa15.27■□□□□ 0.03
PTPRN-204ENST00000423636 SHPRHQ149N8 1683 aa15.27■□□□□ 0.03
PTPRN-204ENST00000423636 ACEP12821 1306 aa15.26■□□□□ 0.03
PTPRN-204ENST00000423636 RSPH6AQ9H0K4 717 aa15.26■□□□□ 0.03
PTPRN-204ENST00000423636 AMOTL2Q9Y2J4 779 aa15.26■□□□□ 0.03
PTPRN-204ENST00000423636 NGDNQ8NEJ9 315 aaKnown RBP15.25■□□□□ 0.03
PTPRN-204ENST00000423636 LMOD2Q6P5Q4 547 aa15.25■□□□□ 0.03
PTPRN-204ENST00000423636 SLKQ9H2G2 1235 aaPredicted RBP15.25■□□□□ 0.03
PTPRN-204ENST00000423636 MS4A1P11836 297 aa15.24■□□□□ 0.03
PTPRN-204ENST00000423636 PDE3AQ14432 1141 aa15.24■□□□□ 0.03
PTPRN-204ENST00000423636 RTL5Q5HYW3 569 aaPredicted RBP15.24■□□□□ 0.03
PTPRN-204ENST00000423636 MYO3AQ8NEV4 1616 aa15.24■□□□□ 0.03
PTPRN-204ENST00000423636 C8orf58Q8NAV2 365 aa15.24■□□□□ 0.03
PTPRN-204ENST00000423636 PHF23Q9BUL5 403 aaPredicted RBP15.24■□□□□ 0.03
PTPRN-204ENST00000423636 TNRQ92752 1358 aa15.24■□□□□ 0.03
PTPRN-204ENST00000423636 USHBP1Q8N6Y0 703 aa15.23■□□□□ 0.03
PTPRN-204ENST00000423636 LNPKQ9C0E8 428 aa15.23■□□□□ 0.03
PTPRN-204ENST00000423636 MVPQ14764 893 aaKnown RBP15.23■□□□□ 0.03
PTPRN-204ENST00000423636 ARHGEF40Q8TER5 1519 aa15.22■□□□□ 0.03
PTPRN-204ENST00000423636 ARXQ96QS3 562 aa15.22■□□□□ 0.03
PTPRN-204ENST00000423636 MBIPQ9NS73 344 aa15.22■□□□□ 0.03
PTPRN-204ENST00000423636 IL13P35225 146 aa15.21■□□□□ 0.03
PTPRN-204ENST00000423636 ATF7IPQ6VMQ6 1270 aa15.21■□□□□ 0.03
PTPRN-204ENST00000423636 MFAP1P55081 439 aaKnown RBP15.2■□□□□ 0.02
PTPRN-204ENST00000423636 EIF4A2Q14240 407 aaKnown RBP15.2■□□□□ 0.02
PTPRN-204ENST00000423636 CPS1P31327 1500 aa15.2■□□□□ 0.02
PTPRN-204ENST00000423636 IQSEC2Q5JU85 1478 aa15.19■□□□□ 0.02
PTPRN-204ENST00000423636 FCHSD2O94868 740 aa15.19■□□□□ 0.02
PTPRN-204ENST00000423636 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.19■□□□□ 0.02
PTPRN-204ENST00000423636 EID1Q9Y6B2 187 aa15.19■□□□□ 0.02
PTPRN-204ENST00000423636 NEURL4Q96JN8 1562 aa15.18■□□□□ 0.02
PTPRN-204ENST00000423636 KCNA6P17658 529 aa15.18■□□□□ 0.02
PTPRN-204ENST00000423636 NFE2L2Q16236 605 aa15.18■□□□□ 0.02
PTPRN-204ENST00000423636 NLRP1Q9C000 1473 aa15.18■□□□□ 0.02
PTPRN-204ENST00000423636 NLRP6P59044 892 aa15.17■□□□□ 0.02
PTPRN-204ENST00000423636 ZFYVE9O95405 1425 aa15.17■□□□□ 0.02
PTPRN-204ENST00000423636 CCDC27Q2M243 656 aa15.17■□□□□ 0.02
PTPRN-204ENST00000423636 TWISTNBQ3B726 338 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-204ENST00000423636 TTC21BQ7Z4L5 1316 aa15.17■□□□□ 0.02
PTPRN-204ENST00000423636 TMEM2Q9UHN6 1383 aa15.17■□□□□ 0.02
PTPRN-204ENST00000423636 SETD1BQ9UPS6 1966 aaKnown RBP15.16■□□□□ 0.02
PTPRN-204ENST00000423636 AMPHP49418 695 aa15.16■□□□□ 0.02
PTPRN-204ENST00000423636 RWDD1Q9H446 243 aaPredicted RBP15.16■□□□□ 0.02
PTPRN-204ENST00000423636 NSD2O96028 1365 aa15.16■□□□□ 0.02
PTPRN-204ENST00000423636 HDGFP51858 240 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms