RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 BAP1Q92560 729 aa4.74□□□□□ -1.65
VPS13A-208ENST00000423463 V9GY48 417 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-208ENST00000423463 TMEM259Q4ZIN3 620 aa4.73□□□□□ -1.65
VPS13A-208ENST00000423463 TRIM67Q6ZTA4 783 aa4.73□□□□□ -1.65
VPS13A-208ENST00000423463 TRIM34Q9BYJ4 488 aa4.73□□□□□ -1.65
VPS13A-208ENST00000423463 SH3BP2P78314 561 aa4.73□□□□□ -1.65
VPS13A-208ENST00000423463 GJD4Q96KN9 370 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-208ENST00000423463 ZNF598Q86UK7 904 aaKnown RBP4.72□□□□□ -1.65
VPS13A-208ENST00000423463 ZNF511Q8NB15 262 aa4.72□□□□□ -1.65
VPS13A-208ENST00000423463 CD2BP2O95400 341 aaKnown RBP4.72□□□□□ -1.65
VPS13A-208ENST00000423463 RPIAP49247 311 aa4.72□□□□□ -1.65
VPS13A-208ENST00000423463 MCM6Q14566 821 aa4.72□□□□□ -1.65
VPS13A-208ENST00000423463 FOXJ1Q92949 421 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 CARD14Q9BXL6 1004 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 MAGEB6P1A0A0J9YX57 407 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 AGERQ15109 404 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 MRGPRX2Q96LB1 330 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 PKD2L1Q9P0L9 805 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 TBC1D2BQ9UPU7 963 aa4.71□□□□□ -1.66
VPS13A-208ENST00000423463 GPR37L1O60883 481 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 C4orf48Q5BLP8 95 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 EHBP1Q8NDI1 1231 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 FKBPLQ9UIM3 349 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 PDZRN3Q9UPQ7 1066 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 RC3H1Q5TC82 1133 aaKnown RBP4.7□□□□□ -1.66
VPS13A-208ENST00000423463 TLL2Q9Y6L7 1015 aa4.7□□□□□ -1.66
VPS13A-208ENST00000423463 GDF9O60383 454 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 BANK1Q8NDB2 785 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 RGS20O76081 388 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 WNT7BP56706 349 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 POM121Q96HA1 1249 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 GDPD2Q9HCC8 539 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 BICRAQ9NZM4 1560 aa4.69□□□□□ -1.66
VPS13A-208ENST00000423463 NBPF14Q5TI25 921 aa4.68□□□□□ -1.66
VPS13A-208ENST00000423463 OCSTAMPQ9BR26 566 aa4.68□□□□□ -1.66
VPS13A-208ENST00000423463 SCRIBQ14160 1630 aa4.68□□□□□ -1.66
VPS13A-208ENST00000423463 UNC13AQ9UPW8 1703 aa4.68□□□□□ -1.66
VPS13A-208ENST00000423463 WNT7AO00755 349 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 GFRA3O60609 400 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 SH3BP5LQ7L8J4 393 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 IRX2Q9BZI1 471 aaPredicted RBP4.67□□□□□ -1.66
VPS13A-208ENST00000423463 ARID5BQ14865 1188 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 SH3RF1Q7Z6J0 888 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 NDUFB9Q9Y6M9 179 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 SHROOM4Q9ULL8 1493 aa4.67□□□□□ -1.66
VPS13A-208ENST00000423463 J3QL48 77 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 ABL2P42684 1182 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 BPHLQ86WA6 291 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-208ENST00000423463 ARMC2Q8NEN0 867 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 ALDH1A1P00352 501 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 FBXO45P0C2W1 286 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 ARHGAP9Q9BRR9 750 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 TTC24A2A3L6 582 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-208ENST00000423463 CLUAP1Q96AJ1 413 aa4.66□□□□□ -1.66
VPS13A-208ENST00000423463 FAM187AA6NFU0 413 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PRR20EP86478 221 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PRR20CP86479 221 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PRR20DP86480 221 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PRR20BP86481 221 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PRR20AP86496 221 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 ERFEQ4G0M1 354 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 PDXDC2PQ6P474 469 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 CYP4X1Q8N118 509 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 ADAM32Q8TC27 787 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 COG6Q9Y2V7 657 aa4.65□□□□□ -1.66
VPS13A-208ENST00000423463 SIAH2O43255 324 aa4.65□□□□□ -1.67
VPS13A-208ENST00000423463 UBTFP17480 764 aaKnown RBP4.65□□□□□ -1.67
VPS13A-208ENST00000423463 ZBTB33Q86T24 672 aa4.65□□□□□ -1.67
VPS13A-208ENST00000423463 TOR4AQ9NXH8 423 aa4.65□□□□□ -1.67
VPS13A-208ENST00000423463 VARSP26640 1264 aaKnown RBP4.64□□□□□ -1.67
VPS13A-208ENST00000423463 IRF5Q13568 498 aa4.64□□□□□ -1.67
VPS13A-208ENST00000423463 GTF3C3Q9Y5Q9 886 aa4.64□□□□□ -1.67
VPS13A-208ENST00000423463 VAC14Q08AM6 782 aa4.64□□□□□ -1.67
VPS13A-208ENST00000423463 ZBBXA8MT70 800 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 APBB1O00213 710 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 FSHRP23945 695 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 RAB15P59190 212 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 PTK2Q05397 1052 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 FLIIQ13045 1269 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 Q6ZNB5 142 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 GPKOWQ92917 476 aaPredicted RBP eCLIP4.63□□□□□ -1.67
VPS13A-208ENST00000423463 ZC3H4Q9UPT8 1303 aaKnown RBP4.63□□□□□ -1.67
VPS13A-208ENST00000423463 SOCS7O14512 581 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 SMPD1P17405 629 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 PNMA1Q8ND90 353 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 SNIP1Q8TAD8 396 aaKnown RBP4.63□□□□□ -1.67
VPS13A-208ENST00000423463 FAM174AQ8TBP5 190 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 SLC10A4Q96EP9 437 aa4.63□□□□□ -1.67
VPS13A-208ENST00000423463 NRG2O14511 850 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-208ENST00000423463 HPS1Q92902 700 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 C1QTNF2Q9BXJ5 285 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 LCE2BO14633 110 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 NR3C2P08235 984 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 PKDCCQ504Y2 493 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 VASH1Q7L8A9 365 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-208ENST00000423463 WASF2Q9Y6W5 498 aa4.62□□□□□ -1.67
VPS13A-208ENST00000423463 PCDHB9Q9Y5E1 797 aa4.61□□□□□ -1.67
VPS13A-208ENST00000423463 ST8SIA5O15466 376 aa4.61□□□□□ -1.67
VPS13A-208ENST00000423463 RAD21O60216 631 aa4.61□□□□□ -1.67
VPS13A-208ENST00000423463 ADH1CP00326 375 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms