RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ANP32BQ92688 251 aaKnown RBP13.34□□□□□ -0.27
USP54-204ENST00000422491 FOXD4L1Q9NU39 408 aa13.34□□□□□ -0.27
USP54-204ENST00000422491 DEPDC5O75140 1603 aa13.33□□□□□ -0.27
USP54-204ENST00000422491 ADGRF5Q8IZF2 1346 aa13.33□□□□□ -0.27
USP54-204ENST00000422491 ZNF445P59923 1031 aa13.33□□□□□ -0.27
USP54-204ENST00000422491 EXOSC9Q06265 439 aaKnown RBP13.33□□□□□ -0.27
USP54-204ENST00000422491 LNPKQ9C0E8 428 aa13.33□□□□□ -0.27
USP54-204ENST00000422491 GOLGA6L22H0YM25 854 aa13.33□□□□□ -0.28
USP54-204ENST00000422491 BAG4O95429 457 aaKnown RBP13.33□□□□□ -0.28
USP54-204ENST00000422491 CHD1LQ86WJ1 897 aa13.33□□□□□ -0.28
USP54-204ENST00000422491 GAS2L2Q8NHY3 880 aa13.33□□□□□ -0.28
USP54-204ENST00000422491 DDX49Q9Y6V7 483 aaKnown RBP13.33□□□□□ -0.28
USP54-204ENST00000422491 RBM10P98175 930 aaKnown RBP13.32□□□□□ -0.28
USP54-204ENST00000422491 CFAP53Q96M91 514 aa13.32□□□□□ -0.28
USP54-204ENST00000422491 NOB1Q9ULX3 412 aaKnown RBP13.32□□□□□ -0.28
USP54-204ENST00000422491 ZNF500O60304 480 aaPredicted RBP13.32□□□□□ -0.28
USP54-204ENST00000422491 MAP7D2Q96T17 732 aa13.32□□□□□ -0.28
USP54-204ENST00000422491 NOL7Q9UMY1 257 aaKnown RBP13.32□□□□□ -0.28
USP54-204ENST00000422491 IFT172Q9UG01 1749 aa13.32□□□□□ -0.28
USP54-204ENST00000422491 SLC12A5Q9H2X9 1139 aa13.32□□□□□ -0.28
USP54-204ENST00000422491 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.32□□□□□ -0.28
USP54-204ENST00000422491 ABCC1P33527 1531 aa13.31□□□□□ -0.28
USP54-204ENST00000422491 INO80Q9ULG1 1556 aaPredicted RBP13.31□□□□□ -0.28
USP54-204ENST00000422491 CD109Q6YHK3 1445 aa13.31□□□□□ -0.28
USP54-204ENST00000422491 TRAPPC8Q9Y2L5 1435 aa13.31□□□□□ -0.28
USP54-204ENST00000422491 PDLIM2Q96JY6 352 aa13.31□□□□□ -0.28
USP54-204ENST00000422491 RBM42Q9BTD8 480 aaKnown RBP13.31□□□□□ -0.28
USP54-204ENST00000422491 ZC3H13Q5T200 1668 aaKnown RBP13.31□□□□□ -0.28
USP54-204ENST00000422491 ABCC11Q96J66 1382 aa13.31□□□□□ -0.28
USP54-204ENST00000422491 NRXN1Q9ULB1 1477 aa13.3□□□□□ -0.28
USP54-204ENST00000422491 U2AF1L5P0DN76 240 aaPredicted RBP13.3□□□□□ -0.28
USP54-204ENST00000422491 U2AF1Q01081 240 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP54-204ENST00000422491 R3HCC1Q9Y3T6 440 aaKnown RBP13.3□□□□□ -0.28
USP54-204ENST00000422491 VWDEQ8N2E2 1590 aa13.3□□□□□ -0.28
USP54-204ENST00000422491 KIF16BQ96L93 1317 aa13.29□□□□□ -0.28
USP54-204ENST00000422491 TBC1D9Q6ZT07 1266 aa13.29□□□□□ -0.28
USP54-204ENST00000422491 PLCH2O75038 1416 aa13.29□□□□□ -0.28
USP54-204ENST00000422491 TRIM35Q9UPQ4 493 aa13.29□□□□□ -0.28
USP54-204ENST00000422491 UGGT1Q9NYU2 1555 aa13.29□□□□□ -0.28
USP54-204ENST00000422491 ZSCAN23Q3MJ62 389 aa13.28□□□□□ -0.28
USP54-204ENST00000422491 FAM13BQ9NYF5 915 aa13.28□□□□□ -0.28
USP54-204ENST00000422491 PLEKHF1Q96S99 279 aa13.28□□□□□ -0.28
USP54-204ENST00000422491 SETBP1Q9Y6X0 1596 aa13.28□□□□□ -0.28
USP54-204ENST00000422491 MED14O60244 1454 aa13.28□□□□□ -0.28
USP54-204ENST00000422491 RBSNQ9H1K0 784 aa13.27□□□□□ -0.28
USP54-204ENST00000422491 QRICH2Q9H0J4 1663 aa13.27□□□□□ -0.28
USP54-204ENST00000422491 ZFYVE16Q7Z3T8 1539 aa13.27□□□□□ -0.28
USP54-204ENST00000422491 AK9Q5TCS8 1911 aa13.27□□□□□ -0.28
USP54-204ENST00000422491 CYP2E1P05181 493 aaPredicted RBP13.27□□□□□ -0.29
USP54-204ENST00000422491 LMBRD1Q9NUN5 540 aa13.27□□□□□ -0.29
USP54-204ENST00000422491 IL16Q14005 1332 aa13.27□□□□□ -0.29
USP54-204ENST00000422491 UQCRHLA0A096LP55 91 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 UQCRHP07919 91 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 TMPOP42166 694 aaKnown RBP13.26□□□□□ -0.29
USP54-204ENST00000422491 CAVIN1Q6NZI2 390 aaKnown RBP13.26□□□□□ -0.29
USP54-204ENST00000422491 PPRC1Q5VV67 1664 aaKnown RBP13.26□□□□□ -0.29
USP54-204ENST00000422491 PPIP5K1Q6PFW1 1433 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 XPCQ01831 940 aaPredicted RBP13.26□□□□□ -0.29
USP54-204ENST00000422491 KIF1BO60333 1816 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 IPO8O15397 1037 aaKnown RBP13.26□□□□□ -0.29
USP54-204ENST00000422491 MCTP1Q6DN14 999 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 MROH2AA6NES4 1674 aa13.26□□□□□ -0.29
USP54-204ENST00000422491 REREQ9P2R6 1566 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 GCC1Q96CN9 775 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 ZKSCAN5Q9Y2L8 839 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 NSD2O96028 1365 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 PRIM1P49642 420 aaKnown RBP13.25□□□□□ -0.29
USP54-204ENST00000422491 ANKRD45Q5TZF3 282 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 EFCAB2Q5VUJ9 269 aa13.25□□□□□ -0.29
USP54-204ENST00000422491 NUCB2P80303 420 aa13.24□□□□□ -0.29
USP54-204ENST00000422491 SPAG9O60271 1321 aaKnown RBP13.24□□□□□ -0.29
USP54-204ENST00000422491 DYNC1I1O14576 645 aa13.24□□□□□ -0.29
USP54-204ENST00000422491 MTERF4Q7Z6M4 381 aaKnown RBP13.24□□□□□ -0.29
USP54-204ENST00000422491 MCM5P33992 734 aa13.23□□□□□ -0.29
USP54-204ENST00000422491 ALDH1L2Q3SY69 923 aa13.23□□□□□ -0.29
USP54-204ENST00000422491 COL3A1P02461 1466 aaPredicted RBP13.23□□□□□ -0.29
USP54-204ENST00000422491 SMAP1Q8IYB5 467 aaPredicted RBP13.23□□□□□ -0.29
USP54-204ENST00000422491 ZBTB7BO15156 539 aaPredicted RBP13.22□□□□□ -0.29
USP54-204ENST00000422491 PKP1Q13835 747 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 RABEP1Q15276 862 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 CSPP1Q1MSJ5 1256 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 TRAK1Q9UPV9 953 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 ANKRD36BQ8N2N9 1353 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 ADGRB1O14514 1584 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 CDC45O75419 566 aa13.22□□□□□ -0.29
USP54-204ENST00000422491 NCLP19338 710 aaKnown RBP13.22□□□□□ -0.29
USP54-204ENST00000422491 BRPF1P55201 1214 aaPredicted RBP13.21□□□□□ -0.29
USP54-204ENST00000422491 GPT2Q8TD30 523 aa13.21□□□□□ -0.29
USP54-204ENST00000422491 MROH1Q8NDA8 1641 aa13.21□□□□□ -0.3
USP54-204ENST00000422491 PIK3R4Q99570 1358 aa13.2□□□□□ -0.3
USP54-204ENST00000422491 GSPT1P15170 499 aaKnown RBP13.2□□□□□ -0.3
USP54-204ENST00000422491 SIRT2Q8IXJ6 389 aa13.2□□□□□ -0.3
USP54-204ENST00000422491 AFAP1Q8N556 730 aa13.2□□□□□ -0.3
USP54-204ENST00000422491 SASS6Q6UVJ0 657 aa13.2□□□□□ -0.3
USP54-204ENST00000422491 RBM27Q9P2N5 1060 aaKnown RBP13.2□□□□□ -0.3
USP54-204ENST00000422491 ADGRB3O60242 1522 aa13.19□□□□□ -0.3
USP54-204ENST00000422491 U2SURPO15042 1029 aaKnown RBP13.19□□□□□ -0.3
USP54-204ENST00000422491 LRSAM1Q6UWE0 723 aa13.19□□□□□ -0.3
USP54-204ENST00000422491 C1orf115Q9H7X2 142 aa13.19□□□□□ -0.3
USP54-204ENST00000422491 CCDC39Q9UFE4 941 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms