RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 DDX17Q92841 729 aaKnown RBP12.21□□□□□ -0.46
HPS4-204ENST00000422379 CGNL1Q0VF96 1302 aa12.21□□□□□ -0.46
HPS4-204ENST00000422379 NGDNQ8NEJ9 315 aaKnown RBP12.2□□□□□ -0.46
HPS4-204ENST00000422379 XPCQ01831 940 aaPredicted RBP12.19□□□□□ -0.46
HPS4-204ENST00000422379 RALBP1Q15311 655 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 CADPS2Q86UW7 1296 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 TTC21BQ7Z4L5 1316 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 CCER2I3L3R5 266 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 FOXO3O43524 673 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 FBLN1P23142 703 aa12.19□□□□□ -0.46
HPS4-204ENST00000422379 PPP2R1AP30153 589 aa12.18□□□□□ -0.46
HPS4-204ENST00000422379 TNNT2P45379 298 aaPredicted RBP12.18□□□□□ -0.46
HPS4-204ENST00000422379 ZNF692Q9BU19 519 aaPredicted RBP12.18□□□□□ -0.46
HPS4-204ENST00000422379 MYBBP1AQ9BQG0 1328 aaKnown RBP12.18□□□□□ -0.46
HPS4-204ENST00000422379 BRINP3Q76B58 766 aa12.17□□□□□ -0.46
HPS4-204ENST00000422379 PIK3C2AO00443 1686 aa12.17□□□□□ -0.46
HPS4-204ENST00000422379 KIF20BQ96Q89 1820 aa12.17□□□□□ -0.46
HPS4-204ENST00000422379 SLAIN2Q9P270 581 aa12.17□□□□□ -0.46
HPS4-204ENST00000422379 NSD2O96028 1365 aa12.17□□□□□ -0.46
HPS4-204ENST00000422379 OVOS2A0A0J9YW53 1432 aa12.16□□□□□ -0.46
HPS4-204ENST00000422379 OVOS2Q6IE36 1432 aa12.16□□□□□ -0.46
HPS4-204ENST00000422379 MORC1Q86VD1 984 aa12.16□□□□□ -0.46
HPS4-204ENST00000422379 ANKRD26Q9UPS8 1709 aa12.16□□□□□ -0.46
HPS4-204ENST00000422379 GTF3C3Q9Y5Q9 886 aa12.15□□□□□ -0.46
HPS4-204ENST00000422379 MARF1Q9Y4F3 1742 aaKnown RBP12.15□□□□□ -0.46
HPS4-204ENST00000422379 TRPM3Q9HCF6 1732 aaPredicted RBP12.15□□□□□ -0.47
HPS4-204ENST00000422379 KIF1AQ12756 1690 aa12.15□□□□□ -0.47
HPS4-204ENST00000422379 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
HPS4-204ENST00000422379 NLRP13Q86W25 1043 aa12.14□□□□□ -0.47
HPS4-204ENST00000422379 MRS2Q9HD23 443 aa12.14□□□□□ -0.47
HPS4-204ENST00000422379 PXDNQ92626 1479 aa12.14□□□□□ -0.47
HPS4-204ENST00000422379 NUTM2GQ5VZR2 741 aa12.13□□□□□ -0.47
HPS4-204ENST00000422379 PSME1Q06323 249 aa12.13□□□□□ -0.47
HPS4-204ENST00000422379 BRD4O60885 1362 aaPredicted RBP12.12□□□□□ -0.47
HPS4-204ENST00000422379 TTC21AQ8NDW8 1320 aa12.12□□□□□ -0.47
HPS4-204ENST00000422379 KRT28Q7Z3Y7 464 aa12.12□□□□□ -0.47
HPS4-204ENST00000422379 USP31Q70CQ4 1352 aa12.12□□□□□ -0.47
HPS4-204ENST00000422379 PAK3O75914 559 aaPredicted RBP12.11□□□□□ -0.47
HPS4-204ENST00000422379 PNISRQ8TF01 805 aaKnown RBP12.11□□□□□ -0.47
HPS4-204ENST00000422379 MTHFSP49914 203 aa12.1□□□□□ -0.47
HPS4-204ENST00000422379 COG3Q96JB2 828 aa12.1□□□□□ -0.47
HPS4-204ENST00000422379 USP54Q70EL1 1684 aa12.1□□□□□ -0.47
HPS4-204ENST00000422379 ALS2Q96Q42 1657 aa12.1□□□□□ -0.47
HPS4-204ENST00000422379 ABTB2Q8N961 1025 aa12.09□□□□□ -0.47
HPS4-204ENST00000422379 POLKQ9UBT6 870 aa12.09□□□□□ -0.47
HPS4-204ENST00000422379 EMILIN1Q9Y6C2 1016 aa12.09□□□□□ -0.47
HPS4-204ENST00000422379 SOX12O15370 315 aa12.09□□□□□ -0.47
HPS4-204ENST00000422379 NLRP6P59044 892 aa12.09□□□□□ -0.47
HPS4-204ENST00000422379 RRS1Q15050 365 aaKnown RBP12.09□□□□□ -0.47
HPS4-204ENST00000422379 COL3A1P02461 1466 aaPredicted RBP12.09□□□□□ -0.47
HPS4-204ENST00000422379 ROBO1Q9Y6N7 1651 aa12.08□□□□□ -0.47
HPS4-204ENST00000422379 NPHP3Q7Z494 1330 aa12.08□□□□□ -0.47
HPS4-204ENST00000422379 SOS2Q07890 1332 aaPredicted RBP12.08□□□□□ -0.48
HPS4-204ENST00000422379 NHSL1Q5SYE7 1610 aa12.08□□□□□ -0.48
HPS4-204ENST00000422379 MED1Q15648 1581 aaPredicted RBP12.07□□□□□ -0.48
HPS4-204ENST00000422379 FAM9BQ8IZU0 186 aa12.07□□□□□ -0.48
HPS4-204ENST00000422379 PEAK1Q9H792 1746 aa12.07□□□□□ -0.48
HPS4-204ENST00000422379 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
HPS4-204ENST00000422379 AATKQ6ZMQ8 1374 aa12.07□□□□□ -0.48
HPS4-204ENST00000422379 PLEKHG5O94827 1062 aa12.07□□□□□ -0.48
HPS4-204ENST00000422379 PIAS4Q8N2W9 510 aaPredicted RBP12.07□□□□□ -0.48
HPS4-204ENST00000422379 SHPRHQ149N8 1683 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 SBNO1A3KN83 1393 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 PNPLA6Q8IY17 1366 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 NFAT5O94916 1531 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 TNS3Q68CZ2 1445 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 SPATA31A3Q5VYP0 1347 aa12.06□□□□□ -0.48
HPS4-204ENST00000422379 SENP3-EIF4A1A0A087X0R7 540 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 NPM3O75607 178 aaKnown RBP12.05□□□□□ -0.48
HPS4-204ENST00000422379 USP19O94966 1318 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 SLIT3O75094 1523 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 LMOD2Q6P5Q4 547 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 CERKQ8TCT0 537 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 MAP3K19Q56UN5 1328 aa12.05□□□□□ -0.48
HPS4-204ENST00000422379 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
HPS4-204ENST00000422379 PPM1GO15355 546 aaPredicted RBP12.04□□□□□ -0.48
HPS4-204ENST00000422379 CABLES1Q8TDN4 633 aa12.04□□□□□ -0.48
HPS4-204ENST00000422379 IQSEC2Q5JU85 1478 aa12.04□□□□□ -0.48
HPS4-204ENST00000422379 PIP4K2BP78356 416 aa12.03□□□□□ -0.48
HPS4-204ENST00000422379 ADAMTS8Q9UP79 889 aa12.03□□□□□ -0.48
HPS4-204ENST00000422379 AHDC1Q5TGY3 1603 aaPredicted RBP12.03□□□□□ -0.48
HPS4-204ENST00000422379 CRYBG1Q9Y4K1 1723 aa12.03□□□□□ -0.48
HPS4-204ENST00000422379 INSRP06213 1382 aa12.03□□□□□ -0.48
HPS4-204ENST00000422379 CDK12Q9NYV4 1490 aaPredicted RBP12.02□□□□□ -0.48
HPS4-204ENST00000422379 UBAP1LF5GYI3 381 aa12.02□□□□□ -0.49
HPS4-204ENST00000422379 GCP02774 474 aa12.01□□□□□ -0.49
HPS4-204ENST00000422379 HSP90AB2PQ58FF8 381 aa12.01□□□□□ -0.49
HPS4-204ENST00000422379 PHRF1Q9P1Y6 1649 aaKnown RBP12□□□□□ -0.49
HPS4-204ENST00000422379 TOM1O60784 492 aa12□□□□□ -0.49
HPS4-204ENST00000422379 COL16A1Q07092 1604 aaPredicted RBP12□□□□□ -0.49
HPS4-204ENST00000422379 IL13P35225 146 aa11.99□□□□□ -0.49
HPS4-204ENST00000422379 BLMP54132 1417 aaPredicted RBP11.99□□□□□ -0.49
HPS4-204ENST00000422379 ARHGEF10O15013 1369 aa11.99□□□□□ -0.49
HPS4-204ENST00000422379 ARHGEF25Q86VW2 580 aa11.99□□□□□ -0.49
HPS4-204ENST00000422379 HOXC9P31274 260 aa11.98□□□□□ -0.49
HPS4-204ENST00000422379 ZC3H6P61129 1189 aaKnown RBP11.98□□□□□ -0.49
HPS4-204ENST00000422379 EIF4A2Q14240 407 aaKnown RBP11.98□□□□□ -0.49
HPS4-204ENST00000422379 LTN1O94822 1766 aa11.98□□□□□ -0.49
HPS4-204ENST00000422379 DIAPH1O60610 1272 aaKnown RBP11.98□□□□□ -0.49
HPS4-204ENST00000422379 CCDC146Q8IYE0 955 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms