RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.28■■□□□ 1.16
ITGB1-204ENST00000417122 RGS12O14924 1447 aa22.28■■□□□ 1.16
ITGB1-204ENST00000417122 PPIP5K1Q6PFW1 1433 aa22.28■■□□□ 1.16
ITGB1-204ENST00000417122 RALGAPBQ86X10 1494 aa22.27■■□□□ 1.16
ITGB1-204ENST00000417122 EVC2Q86UK5 1308 aa22.27■■□□□ 1.16
ITGB1-204ENST00000417122 UNC5CLQ8IV45 518 aa22.26■■□□□ 1.15
ITGB1-204ENST00000417122 CARD11Q9BXL7 1154 aa22.26■■□□□ 1.15
ITGB1-204ENST00000417122 PLCH1Q4KWH8 1693 aa22.25■■□□□ 1.15
ITGB1-204ENST00000417122 CRYBG1Q9Y4K1 1723 aa22.25■■□□□ 1.15
ITGB1-204ENST00000417122 NWD2Q9ULI1 1742 aa22.23■■□□□ 1.15
ITGB1-204ENST00000417122 FAM83GA6ND36 823 aa22.22■■□□□ 1.15
ITGB1-204ENST00000417122 GJD4Q96KN9 370 aaPredicted RBP22.22■■□□□ 1.15
ITGB1-204ENST00000417122 CABP1Q9NZU7 370 aa22.21■■□□□ 1.15
ITGB1-204ENST00000417122 PCGF6Q9BYE7 350 aa22.2■■□□□ 1.14
ITGB1-204ENST00000417122 NUTM2GQ5VZR2 741 aa22.19■■□□□ 1.14
ITGB1-204ENST00000417122 UPF1Q92900 1129 aaKnown RBP eCLIP22.19■■□□□ 1.14
ITGB1-204ENST00000417122 PHRF1Q9P1Y6 1649 aaKnown RBP22.19■■□□□ 1.14
ITGB1-204ENST00000417122 COL14A1Q05707 1796 aaKnown RBP22.19■■□□□ 1.14
ITGB1-204ENST00000417122 SBNO2Q9Y2G9 1366 aa22.18■■□□□ 1.14
ITGB1-204ENST00000417122 ABTB2Q8N961 1025 aa22.18■■□□□ 1.14
ITGB1-204ENST00000417122 GLI3P10071 1580 aa22.17■■□□□ 1.14
ITGB1-204ENST00000417122 BRD4O60885 1362 aaPredicted RBP22.16■■□□□ 1.14
ITGB1-204ENST00000417122 VPS72Q15906 364 aa22.16■■□□□ 1.14
ITGB1-204ENST00000417122 NRAPQ86VF7 1730 aa22.15■■□□□ 1.14
ITGB1-204ENST00000417122 BTG4Q9NY30 223 aa22.15■■□□□ 1.14
ITGB1-204ENST00000417122 USP6P35125 1406 aa22.14■■□□□ 1.14
ITGB1-204ENST00000417122 ATAD2Q6PL18 1390 aa22.14■■□□□ 1.14
ITGB1-204ENST00000417122 CCDC9Q9Y3X0 531 aaKnown RBP22.14■■□□□ 1.13
ITGB1-204ENST00000417122 PRDM11Q9NQV5 511 aa22.13■■□□□ 1.13
ITGB1-204ENST00000417122 CLSPNQ9HAW4 1339 aa22.12■■□□□ 1.13
ITGB1-204ENST00000417122 NLRP13Q86W25 1043 aa22.12■■□□□ 1.13
ITGB1-204ENST00000417122 AKAP12Q02952 1782 aa22.12■■□□□ 1.13
ITGB1-204ENST00000417122 KIAA0232Q92628 1395 aa22.12■■□□□ 1.13
ITGB1-204ENST00000417122 ZC3H6P61129 1189 aaKnown RBP22.11■■□□□ 1.13
ITGB1-204ENST00000417122 ZNF692Q9BU19 519 aaPredicted RBP22.11■■□□□ 1.13
ITGB1-204ENST00000417122 NRKQ7Z2Y5 1582 aa22.11■■□□□ 1.13
ITGB1-204ENST00000417122 USP19O94966 1318 aa22.1■■□□□ 1.13
ITGB1-204ENST00000417122 SSH2Q76I76 1423 aa22.1■■□□□ 1.13
ITGB1-204ENST00000417122 CHRNA2Q15822 529 aa22.08■■□□□ 1.13
ITGB1-204ENST00000417122 CPSF1Q10570 1443 aaKnown RBP22.07■■□□□ 1.12
ITGB1-204ENST00000417122 TIMELESSQ9UNS1 1208 aa22.07■■□□□ 1.12
ITGB1-204ENST00000417122 PIK3C2AO00443 1686 aa22.07■■□□□ 1.12
ITGB1-204ENST00000417122 BRWD3Q6RI45 1802 aa22.06■■□□□ 1.12
ITGB1-204ENST00000417122 ST20-MTHFSA0A0A6YYL1 179 aa22.06■■□□□ 1.12
ITGB1-204ENST00000417122 GCP02774 474 aa22.06■■□□□ 1.12
ITGB1-204ENST00000417122 NLRP6P59044 892 aa22.06■■□□□ 1.12
ITGB1-204ENST00000417122 TTC21BQ7Z4L5 1316 aa22.06■■□□□ 1.12
ITGB1-204ENST00000417122 ONECUT3O60422 494 aaPredicted RBP22.05■■□□□ 1.12
ITGB1-204ENST00000417122 SEPT12Q8IYM1 358 aa22.05■■□□□ 1.12
ITGB1-204ENST00000417122 CPDO75976 1380 aa22.04■■□□□ 1.12
ITGB1-204ENST00000417122 KTN1Q86UP2 1357 aaKnown RBP22.04■■□□□ 1.12
ITGB1-204ENST00000417122 MON2Q7Z3U7 1717 aa22.04■■□□□ 1.12
ITGB1-204ENST00000417122 TESK2Q96S53 571 aa22.04■■□□□ 1.12
ITGB1-204ENST00000417122 TMC1Q8TDI8 760 aa22.03■■□□□ 1.12
ITGB1-204ENST00000417122 PUS7Q96PZ0 661 aaKnown RBP22.03■■□□□ 1.12
ITGB1-204ENST00000417122 SPATA31A5Q5VU36 1347 aa22.03■■□□□ 1.12
ITGB1-204ENST00000417122 SPATA31A7Q8IWB4 1347 aa22.03■■□□□ 1.12
ITGB1-204ENST00000417122 TTC21AQ8NDW8 1320 aa22.03■■□□□ 1.12
ITGB1-204ENST00000417122 SLIT3O75094 1523 aa22.02■■□□□ 1.12
ITGB1-204ENST00000417122 SLC24A1O60721 1099 aa22.02■■□□□ 1.12
ITGB1-204ENST00000417122 STRN4Q9NRL3 753 aa22.02■■□□□ 1.12
ITGB1-204ENST00000417122 FAM98CQ17RN3 349 aaKnown RBP22.01■■□□□ 1.11
ITGB1-204ENST00000417122 LMO7Q8WWI1 1683 aa22.01■■□□□ 1.11
ITGB1-204ENST00000417122 USP47Q96K76 1375 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 A0A0G2JS52 829 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 MYT1Q01538 1121 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 CCER1Q8TC90 406 aaPredicted RBP22■■□□□ 1.11
ITGB1-204ENST00000417122 SLC12A5Q9H2X9 1139 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 CD163L1Q9NR16 1453 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 CAMTA1Q9Y6Y1 1673 aa22■■□□□ 1.11
ITGB1-204ENST00000417122 EVA1CP58658 441 aa21.99■■□□□ 1.11
ITGB1-204ENST00000417122 HDGFL2Q7Z4V5 671 aaPredicted RBP21.99■■□□□ 1.11
ITGB1-204ENST00000417122 ZBTB7CA1YPR0 619 aa21.97■■□□□ 1.11
ITGB1-204ENST00000417122 KRT27Q7Z3Y8 459 aa21.97■■□□□ 1.11
ITGB1-204ENST00000417122 SPATA31A1Q5TZJ5 1347 aa21.97■■□□□ 1.11
ITGB1-204ENST00000417122 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.96■■□□□ 1.119e-7■■■□□ 16.9
ITGB1-204ENST00000417122 TERF2IPQ9NYB0 399 aa21.96■■□□□ 1.11
ITGB1-204ENST00000417122 CCDC125Q86Z20 511 aa21.95■■□□□ 1.1
ITGB1-204ENST00000417122 KCNH5Q8NCM2 988 aa21.95■■□□□ 1.1
ITGB1-204ENST00000417122 THSD7AQ9UPZ6 1657 aa21.95■■□□□ 1.1
ITGB1-204ENST00000417122 LARP1Q6PKG0 1096 aaKnown RBP21.94■■□□□ 1.1
ITGB1-204ENST00000417122 A0A1W2PP64 1363 aa21.94■■□□□ 1.1
ITGB1-204ENST00000417122 NINLQ9Y2I6 1382 aa21.94■■□□□ 1.1
ITGB1-204ENST00000417122 COL5A2P05997 1499 aaPredicted RBP21.93■■□□□ 1.1
ITGB1-204ENST00000417122 TMF1P82094 1093 aa21.93■■□□□ 1.1
ITGB1-204ENST00000417122 EDC4Q6P2E9 1401 aaKnown RBP21.93■■□□□ 1.1
ITGB1-204ENST00000417122 AATKQ6ZMQ8 1374 aa21.93■■□□□ 1.1
ITGB1-204ENST00000417122 USP35Q9P2H5 1018 aa21.93■■□□□ 1.1
ITGB1-204ENST00000417122 SOX12O15370 315 aa21.92■■□□□ 1.1
ITGB1-204ENST00000417122 COL18A1P39060 1754 aa21.92■■□□□ 1.1
ITGB1-204ENST00000417122 USP54Q70EL1 1684 aa21.91■■□□□ 1.1
ITGB1-204ENST00000417122 USP31Q70CQ4 1352 aa21.91■■□□□ 1.1
ITGB1-204ENST00000417122 NME9Q86XW9 330 aa21.91■■□□□ 1.1
ITGB1-204ENST00000417122 ZRANB1Q9UGI0 708 aa21.91■■□□□ 1.1
ITGB1-204ENST00000417122 ARHGEF25Q86VW2 580 aa21.9■■□□□ 1.1
ITGB1-204ENST00000417122 NFAT5O94916 1531 aa21.9■■□□□ 1.1
ITGB1-204ENST00000417122 BLMP54132 1417 aaPredicted RBP21.89■■□□□ 1.1
ITGB1-204ENST00000417122 BARGINQ6ZT62 677 aa21.89■■□□□ 1.09
ITGB1-204ENST00000417122 EP400Q96L91 3159 aa21.89■■□□□ 1.09
ITGB1-204ENST00000417122 TCP11L2Q8N4U5 519 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms