RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 FAM98CQ17RN3 349 aaKnown RBP16.8■□□□□ 0.28
USP4-204ENST00000416417 NWD2Q9ULI1 1742 aa16.8■□□□□ 0.28
USP4-204ENST00000416417 DEFB132Q7Z7B7 95 aa16.8■□□□□ 0.28
USP4-204ENST00000416417 NRAPQ86VF7 1730 aa16.78■□□□□ 0.28
USP4-204ENST00000416417 CHRNA2Q15822 529 aa16.78■□□□□ 0.28
USP4-204ENST00000416417 ACEP12821 1306 aa16.77■□□□□ 0.28
USP4-204ENST00000416417 ONECUT3O60422 494 aaPredicted RBP16.77■□□□□ 0.28
USP4-204ENST00000416417 FAM182BQ5T319 152 aa16.77■□□□□ 0.28
USP4-204ENST00000416417 KRT27Q7Z3Y8 459 aa16.77■□□□□ 0.28
USP4-204ENST00000416417 CCDC125Q86Z20 511 aa16.77■□□□□ 0.28
USP4-204ENST00000416417 ZRANB1Q9UGI0 708 aa16.77■□□□□ 0.28
USP4-204ENST00000416417 CRYBG1Q9Y4K1 1723 aa16.77■□□□□ 0.27
USP4-204ENST00000416417 BLMP54132 1417 aaPredicted RBP16.76■□□□□ 0.27
USP4-204ENST00000416417 ZC3H6P61129 1189 aaKnown RBP16.76■□□□□ 0.27
USP4-204ENST00000416417 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
USP4-204ENST00000416417 PRDM11Q9NQV5 511 aa16.76■□□□□ 0.27
USP4-204ENST00000416417 COL14A1Q05707 1796 aaKnown RBP16.76■□□□□ 0.27
USP4-204ENST00000416417 NBPF8Q3BBV2 869 aa16.75■□□□□ 0.27
USP4-204ENST00000416417 ITSN1Q15811 1721 aa16.75■□□□□ 0.27
USP4-204ENST00000416417 CABP2Q9NPB3 220 aa16.75■□□□□ 0.27
USP4-204ENST00000416417 KIAA0232Q92628 1395 aa16.75■□□□□ 0.27
USP4-204ENST00000416417 KIAA1210Q9ULL0 1709 aa16.74■□□□□ 0.27
USP4-204ENST00000416417 SRPK2P78362 688 aaKnown RBP16.74■□□□□ 0.27
USP4-204ENST00000416417 L3MBTL2Q969R5 705 aa16.74■□□□□ 0.27
USP4-204ENST00000416417 CCDC61Q9Y6R9 512 aa16.74■□□□□ 0.27
USP4-204ENST00000416417 SRCAPQ6ZRS2 3230 aa16.74■□□□□ 0.27
USP4-204ENST00000416417 TOPAZ1Q8N9V7 1692 aa16.73■□□□□ 0.27
USP4-204ENST00000416417 NEUROD1Q13562 356 aa16.73■□□□□ 0.27
USP4-204ENST00000416417 STRN4Q9NRL3 753 aa16.73■□□□□ 0.27
USP4-204ENST00000416417 SPATA31A5Q5VU36 1347 aa16.73■□□□□ 0.27
USP4-204ENST00000416417 SPATA31A7Q8IWB4 1347 aa16.73■□□□□ 0.27
USP4-204ENST00000416417 POLR3AO14802 1390 aaPredicted RBP16.72■□□□□ 0.27
USP4-204ENST00000416417 SF3B2Q13435 895 aaKnown RBP16.72■□□□□ 0.27
USP4-204ENST00000416417 CENPJQ9HC77 1338 aaPredicted RBP16.72■□□□□ 0.27
USP4-204ENST00000416417 PHRF1Q9P1Y6 1649 aaKnown RBP16.71■□□□□ 0.27
USP4-204ENST00000416417 PLEKHG3A1L390 1219 aa16.71■□□□□ 0.27
USP4-204ENST00000416417 PPIP5K1Q6PFW1 1433 aa16.7■□□□□ 0.26
USP4-204ENST00000416417 ABTB2Q8N961 1025 aa16.7■□□□□ 0.26
USP4-204ENST00000416417 USP35Q9P2H5 1018 aa16.7■□□□□ 0.26
USP4-204ENST00000416417 SPATA31A1Q5TZJ5 1347 aa16.68■□□□□ 0.26
USP4-204ENST00000416417 QRICH2Q9H0J4 1663 aa16.67■□□□□ 0.26
USP4-204ENST00000416417 ZBTB7CA1YPR0 619 aa16.67■□□□□ 0.26
USP4-204ENST00000416417 CABP1Q9NZU7 370 aa16.67■□□□□ 0.26
USP4-204ENST00000416417 NRKQ7Z2Y5 1582 aa16.66■□□□□ 0.26
USP4-204ENST00000416417 EVA1CP58658 441 aa16.65■□□□□ 0.26
USP4-204ENST00000416417 THSD7AQ9UPZ6 1657 aa16.65■□□□□ 0.26
USP4-204ENST00000416417 PSDA5PKW4 1024 aaPredicted RBP16.65■□□□□ 0.26
USP4-204ENST00000416417 EN1Q05925 392 aaPredicted RBP16.65■□□□□ 0.26
USP4-204ENST00000416417 LARP1Q6PKG0 1096 aaKnown RBP16.65■□□□□ 0.26
USP4-204ENST00000416417 BAG6P46379 1132 aa16.64■□□□□ 0.25
USP4-204ENST00000416417 USP19O94966 1318 aa16.64■□□□□ 0.25
USP4-204ENST00000416417 CAMTA1Q9Y6Y1 1673 aa16.64■□□□□ 0.25
USP4-204ENST00000416417 GCP02774 474 aa16.63■□□□□ 0.25
USP4-204ENST00000416417 SSH2Q76I76 1423 aa16.63■□□□□ 0.25
USP4-204ENST00000416417 TRPM1Q7Z4N2 1603 aa16.63■□□□□ 0.25
USP4-204ENST00000416417 NLRP13Q86W25 1043 aa16.62■□□□□ 0.25
USP4-204ENST00000416417 ROCK2O75116 1388 aaKnown RBP16.61■□□□□ 0.25
USP4-204ENST00000416417 USP6P35125 1406 aa16.61■□□□□ 0.25
USP4-204ENST00000416417 TRIM37O94972 964 aa16.6■□□□□ 0.25
USP4-204ENST00000416417 NLRP6P59044 892 aa16.6■□□□□ 0.25
USP4-204ENST00000416417 EVC2Q86UK5 1308 aa16.6■□□□□ 0.25
USP4-204ENST00000416417 LMO7Q8WWI1 1683 aa16.59■□□□□ 0.25
USP4-204ENST00000416417 CPDO75976 1380 aa16.59■□□□□ 0.25
USP4-204ENST00000416417 EZH2Q15910 746 aaKnown RBP16.59■□□□□ 0.25
USP4-204ENST00000416417 SOX12O15370 315 aa16.58■□□□□ 0.24
USP4-204ENST00000416417 RGPD1P0DJD0 1748 aa16.57■□□□□ 0.24
USP4-204ENST00000416417 TCP11L2Q8N4U5 519 aa16.57■□□□□ 0.24
USP4-204ENST00000416417 PDE3BQ13370 1112 aa16.56■□□□□ 0.24
USP4-204ENST00000416417 BARGINQ6ZT62 677 aa16.56■□□□□ 0.24
USP4-204ENST00000416417 TNS1Q9HBL0 1735 aaKnown RBP16.56■□□□□ 0.24
USP4-204ENST00000416417 COL5A2P05997 1499 aaPredicted RBP16.56■□□□□ 0.24
USP4-204ENST00000416417 R3HDM1Q15032 1099 aaKnown RBP16.55■□□□□ 0.24
USP4-204ENST00000416417 FAM196AQ6ZSG2 479 aa16.55■□□□□ 0.24
USP4-204ENST00000416417 PIK3C2AO00443 1686 aa16.55■□□□□ 0.24
USP4-204ENST00000416417 APBA3O96018 575 aa16.55■□□□□ 0.24
USP4-204ENST00000416417 TTC21BQ7Z4L5 1316 aa16.54■□□□□ 0.24
USP4-204ENST00000416417 SLIT3O75094 1523 aa16.54■□□□□ 0.24
USP4-204ENST00000416417 AXIN2Q9Y2T1 843 aa16.54■□□□□ 0.24
USP4-204ENST00000416417 CAMKK2Q96RR4 588 aa16.53■□□□□ 0.24
USP4-204ENST00000416417 BRD4O60885 1362 aaPredicted RBP16.53■□□□□ 0.24
USP4-204ENST00000416417 CARD11Q9BXL7 1154 aa16.51■□□□□ 0.23
USP4-204ENST00000416417 DISP2A7MBM2 1401 aa16.51■□□□□ 0.23
USP4-204ENST00000416417 CRB1P82279 1406 aa16.51■□□□□ 0.23
USP4-204ENST00000416417 AATKQ6ZMQ8 1374 aa16.51■□□□□ 0.23
USP4-204ENST00000416417 TOM1L2Q6ZVM7 507 aa16.5■□□□□ 0.23
USP4-204ENST00000416417 KTN1Q86UP2 1357 aaKnown RBP16.5■□□□□ 0.23
USP4-204ENST00000416417 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP4-204ENST00000416417 THRAP3Q9Y2W1 955 aaKnown RBP16.5■□□□□ 0.23
USP4-204ENST00000416417 ZNF692Q9BU19 519 aaPredicted RBP16.49■□□□□ 0.23
USP4-204ENST00000416417 COL18A1P39060 1754 aa16.49■□□□□ 0.23
USP4-204ENST00000416417 AKAP12Q02952 1782 aa16.49■□□□□ 0.23
USP4-204ENST00000416417 CPSF1Q10570 1443 aaKnown RBP16.48■□□□□ 0.23
USP4-204ENST00000416417 ARHGEF25Q86VW2 580 aa16.48■□□□□ 0.23
USP4-204ENST00000416417 TMC1Q8TDI8 760 aa16.47■□□□□ 0.23
USP4-204ENST00000416417 LRP5O75197 1615 aa16.47■□□□□ 0.23
USP4-204ENST00000416417 PARP4Q9UKK3 1724 aaKnown RBP16.46■□□□□ 0.23
USP4-204ENST00000416417 CSB-PGBD3P0DP91 1061 aa16.46■□□□□ 0.23
USP4-204ENST00000416417 PTF1AQ7RTS3 328 aa16.46■□□□□ 0.23
USP4-204ENST00000416417 NME9Q86XW9 330 aa16.46■□□□□ 0.23
USP4-204ENST00000416417 TONSLQ96HA7 1378 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms