RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 ZHX1Q9UKY1 873 aaPredicted RBP26.22■■□□□ 1.79
AP1S3-205ENST00000415298 TMEM51Q9NW97 253 aa26.21■■□□□ 1.79
AP1S3-205ENST00000415298 DLC1Q96QB1 1528 aa26.21■■□□□ 1.79
AP1S3-205ENST00000415298 UTP14CQ5TAP6 766 aaKnown RBP26.21■■□□□ 1.79
AP1S3-205ENST00000415298 CHD2O14647 1828 aaKnown RBP26.19■■□□□ 1.78
AP1S3-205ENST00000415298 PIK3R4Q99570 1358 aa26.19■■□□□ 1.78
AP1S3-205ENST00000415298 CHRM1P11229 460 aaPredicted RBP26.19■■□□□ 1.78
AP1S3-205ENST00000415298 KNDC1Q76NI1 1749 aa26.18■■□□□ 1.78
AP1S3-205ENST00000415298 CPS1P31327 1500 aa26.18■■□□□ 1.78
AP1S3-205ENST00000415298 MS4A1P11836 297 aa26.18■■□□□ 1.78
AP1S3-205ENST00000415298 SBNO2Q9Y2G9 1366 aa26.17■■□□□ 1.78
AP1S3-205ENST00000415298 SIRT1Q96EB6 747 aa26.17■■□□□ 1.78
AP1S3-205ENST00000415298 ZNF830Q96NB3 372 aaPredicted RBP26.17■■□□□ 1.78
AP1S3-205ENST00000415298 CABP2Q9NPB3 220 aa26.16■■□□□ 1.78
AP1S3-205ENST00000415298 XRN1Q8IZH2 1706 aaKnown RBP26.16■■□□□ 1.78
AP1S3-205ENST00000415298 FAM135BQ49AJ0 1406 aa26.16■■□□□ 1.78
AP1S3-205ENST00000415298 TULP4Q9NRJ4 1543 aa26.14■■□□□ 1.77
AP1S3-205ENST00000415298 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.12■■□□□ 1.77
AP1S3-205ENST00000415298 PLCD3Q8N3E9 789 aa26.12■■□□□ 1.77
AP1S3-205ENST00000415298 CDK19Q9BWU1 502 aa26.12■■□□□ 1.77
AP1S3-205ENST00000415298 EVC2Q86UK5 1308 aa26.12■■□□□ 1.77
AP1S3-205ENST00000415298 SRPK2P78362 688 aaKnown RBP26.11■■□□□ 1.77
AP1S3-205ENST00000415298 PTCH1Q13635 1447 aa26.11■■□□□ 1.77
AP1S3-205ENST00000415298 SAMD1Q6SPF0 538 aaPredicted RBP26.1■■□□□ 1.77
AP1S3-205ENST00000415298 SECISBP2LQ93073 1101 aaKnown RBP26.1■■□□□ 1.77
AP1S3-205ENST00000415298 ZBED9Q6R2W3 1325 aa26.1■■□□□ 1.77
AP1S3-205ENST00000415298 NUTM2FA1L443 756 aa26.09■■□□□ 1.77
AP1S3-205ENST00000415298 STRCP1A6NGW2 1772 aa26.09■■□□□ 1.77
AP1S3-205ENST00000415298 ZNF335Q9H4Z2 1342 aaPredicted RBP26.09■■□□□ 1.77
AP1S3-205ENST00000415298 DMTNQ08495 405 aa26.09■■□□□ 1.77
AP1S3-205ENST00000415298 CDCA8Q53HL2 280 aa26.08■■□□□ 1.76
AP1S3-205ENST00000415298 PPP4R3BQ5MIZ7 849 aa26.07■■□□□ 1.76
AP1S3-205ENST00000415298 RNF123Q5XPI4 1314 aa26.07■■□□□ 1.76
AP1S3-205ENST00000415298 WASLO00401 505 aaPredicted RBP26.07■■□□□ 1.76
AP1S3-205ENST00000415298 HOMEZQ8IX15 550 aa26.07■■□□□ 1.76
AP1S3-205ENST00000415298 PROSER2Q86WR7 435 aaPredicted RBP26.06■■□□□ 1.76
AP1S3-205ENST00000415298 SLC12A5Q9H2X9 1139 aa26.06■■□□□ 1.76
AP1S3-205ENST00000415298 TMC1Q8TDI8 760 aa26.05■■□□□ 1.76
AP1S3-205ENST00000415298 ESPNB1AK53 854 aa26.03■■□□□ 1.76
AP1S3-205ENST00000415298 XRCC6P12956 609 aaKnown RBP eCLIP26.03■■□□□ 1.76
AP1S3-205ENST00000415298 PANK3Q9H999 370 aa26.03■■□□□ 1.76
AP1S3-205ENST00000415298 NWD1Q149M9 1564 aa26.02■■□□□ 1.76
AP1S3-205ENST00000415298 SLC4A3P48751 1232 aa26.02■■□□□ 1.76
AP1S3-205ENST00000415298 DMRT2Q9Y5R5 561 aa26.02■■□□□ 1.76
AP1S3-205ENST00000415298 C14orf37Q86TY3 774 aa26■■□□□ 1.75
AP1S3-205ENST00000415298 VGLL3A8MV65 326 aa25.99■■□□□ 1.75
AP1S3-205ENST00000415298 MYOM1P52179 1685 aa25.98■■□□□ 1.75
AP1S3-205ENST00000415298 PRR36Q9H6K5 1346 aa25.98■■□□□ 1.75
AP1S3-205ENST00000415298 TNNT2P45379 298 aaPredicted RBP25.98■■□□□ 1.75
AP1S3-205ENST00000415298 BCCIPQ9P287 314 aaKnown RBP eCLIP25.98■■□□□ 1.75
AP1S3-205ENST00000415298 NUDT16Q96DE0 195 aaKnown RBP25.97■■□□□ 1.75
AP1S3-205ENST00000415298 CABP1Q9NZU7 370 aa25.97■■□□□ 1.75
AP1S3-205ENST00000415298 TMEM94Q12767 1356 aa25.97■■□□□ 1.75
AP1S3-205ENST00000415298 KIAA1211Q6ZU35 1233 aa25.96■■□□□ 1.75
AP1S3-205ENST00000415298 NALCNQ8IZF0 1738 aa25.96■■□□□ 1.75
AP1S3-205ENST00000415298 ANP32BQ92688 251 aaKnown RBP25.95■■□□□ 1.75
AP1S3-205ENST00000415298 MTERF4Q7Z6M4 381 aaKnown RBP25.95■■□□□ 1.74
AP1S3-205ENST00000415298 PUS7Q96PZ0 661 aaKnown RBP25.95■■□□□ 1.74
AP1S3-205ENST00000415298 PER1O15534 1290 aaPredicted RBP25.94■■□□□ 1.74
AP1S3-205ENST00000415298 NKTRP30414 1462 aaKnown RBP25.94■■□□□ 1.74
AP1S3-205ENST00000415298 SMG6Q86US8 1419 aaKnown RBP25.94■■□□□ 1.74
AP1S3-205ENST00000415298 TERF1P54274 439 aa25.93■■□□□ 1.74
AP1S3-205ENST00000415298 ADGRB2O60241 1585 aa25.93■■□□□ 1.74
AP1S3-205ENST00000415298 GOLGA6L3A6NEY3 463 aa25.93■■□□□ 1.74
AP1S3-205ENST00000415298 KIF20AO95235 890 aa25.93■■□□□ 1.74
AP1S3-205ENST00000415298 CARD14Q9BXL6 1004 aa25.92■■□□□ 1.74
AP1S3-205ENST00000415298 RIPK4P57078 832 aa25.92■■□□□ 1.74
AP1S3-205ENST00000415298 ATAD2Q6PL18 1390 aa25.91■■□□□ 1.74
AP1S3-205ENST00000415298 ADGRL3Q9HAR2 1447 aa25.91■■□□□ 1.74
AP1S3-205ENST00000415298 FSD2A1L4K1 749 aa25.91■■□□□ 1.74
AP1S3-205ENST00000415298 CCDC61Q9Y6R9 512 aa25.9■■□□□ 1.74
AP1S3-205ENST00000415298 ATP7BP35670 1465 aa25.89■■□□□ 1.74
AP1S3-205ENST00000415298 PRDM10Q9NQV6 1147 aa25.89■■□□□ 1.73
AP1S3-205ENST00000415298 RGPD8O14715 1765 aaPredicted RBP25.89■■□□□ 1.73
AP1S3-205ENST00000415298 HAP1P54257 671 aaPredicted RBP25.88■■□□□ 1.73
AP1S3-205ENST00000415298 C19orf44Q9H6X5 657 aa25.88■■□□□ 1.73
AP1S3-205ENST00000415298 LRRC7Q96NW7 1537 aa25.87■■□□□ 1.73
AP1S3-205ENST00000415298 PPIP5K1Q6PFW1 1433 aa25.87■■□□□ 1.73
AP1S3-205ENST00000415298 ERBB4Q15303 1308 aa25.87■■□□□ 1.73
AP1S3-205ENST00000415298 PMFBP1Q8TBY8 1022 aa25.87■■□□□ 1.73
AP1S3-205ENST00000415298 RNF216Q9NWF9 866 aaPredicted RBP25.87■■□□□ 1.73
AP1S3-205ENST00000415298 ZSCAN20P17040 1043 aaPredicted RBP25.86■■□□□ 1.73
AP1S3-205ENST00000415298 PANK2Q9BZ23 570 aa25.86■■□□□ 1.73
AP1S3-205ENST00000415298 USP32Q8NFA0 1604 aa25.86■■□□□ 1.73
AP1S3-205ENST00000415298 XIRP1Q702N8 1843 aaKnown RBP25.86■■□□□ 1.73
AP1S3-205ENST00000415298 CD163L1Q9NR16 1453 aa25.85■■□□□ 1.73
AP1S3-205ENST00000415298 FAM13BQ9NYF5 915 aa25.85■■□□□ 1.73
AP1S3-205ENST00000415298 A0A1W2PP64 1363 aa25.85■■□□□ 1.73
AP1S3-205ENST00000415298 RGS22Q8NE09 1264 aa25.83■■□□□ 1.73
AP1S3-205ENST00000415298 CC2D1BQ5T0F9 858 aaKnown RBP25.83■■□□□ 1.73
AP1S3-205ENST00000415298 KNSTRNQ9Y448 316 aa25.82■■□□□ 1.72
AP1S3-205ENST00000415298 GTPBP4Q9BZE4 634 aaKnown RBP25.82■■□□□ 1.72
AP1S3-205ENST00000415298 CDC42BPGQ6DT37 1551 aa25.82■■□□□ 1.72
AP1S3-205ENST00000415298 FMN2Q9NZ56 1722 aa25.82■■□□□ 1.72
AP1S3-205ENST00000415298 ANKRD36BQ8N2N9 1353 aa25.81■■□□□ 1.72
AP1S3-205ENST00000415298 TAF3Q5VWG9 929 aa25.81■■□□□ 1.72
AP1S3-205ENST00000415298 ORAI2Q96SN7 254 aa25.8■■□□□ 1.72
AP1S3-205ENST00000415298 TERF2IPQ9NYB0 399 aa25.79■■□□□ 1.72
AP1S3-205ENST00000415298 ACEP12821 1306 aa25.79■■□□□ 1.72
AP1S3-205ENST00000415298 NSD3Q9BZ95 1437 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms