RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 RAPGEF3O95398 923 aa5□□□□□ -1.61
RTN4-209ENST00000405240 MAPK8IP3Q9UPT6 1336 aa5□□□□□ -1.61
RTN4-209ENST00000405240 GGT6Q6P531 493 aa5□□□□□ -1.61
RTN4-209ENST00000405240 TRIM35Q9UPQ4 493 aa5□□□□□ -1.61
RTN4-209ENST00000405240 N4BP2Q86UW6 1770 aaPredicted RBP4.99□□□□□ -1.61
RTN4-209ENST00000405240 RLBP1P12271 317 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 CDK12Q9NYV4 1490 aaPredicted RBP4.99□□□□□ -1.61
RTN4-209ENST00000405240 FMN2Q9NZ56 1722 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 FYB1O15117 783 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 PIK3R4Q99570 1358 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 SIRT1Q96EB6 747 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 CFAP53Q96M91 514 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 PCDHB15Q9Y5E8 787 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 TSPOAP1O95153 1857 aa4.99□□□□□ -1.61
RTN4-209ENST00000405240 AATKQ6ZMQ8 1374 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 PMFBP1Q8TBY8 1022 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 MYH16Q9H6N6 1097 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 MARF1Q9Y4F3 1742 aaKnown RBP4.98□□□□□ -1.61
RTN4-209ENST00000405240 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.98□□□□□ -1.61
RTN4-209ENST00000405240 PANK1Q8TE04 598 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 TUBGCP6Q96RT7 1819 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 HDAC1Q13547 482 aaPredicted RBP4.98□□□□□ -1.61
RTN4-209ENST00000405240 CABP2Q9NPB3 220 aa4.98□□□□□ -1.61
RTN4-209ENST00000405240 TMPOP42166 694 aaKnown RBP4.97□□□□□ -1.61
RTN4-209ENST00000405240 MVPQ14764 893 aaKnown RBP4.97□□□□□ -1.61
RTN4-209ENST00000405240 PEAK1Q9H792 1746 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 PTCH1Q13635 1447 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 EDC4Q6P2E9 1401 aaKnown RBP4.97□□□□□ -1.61
RTN4-209ENST00000405240 RIMS2Q9UQ26 1411 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 NBR1Q14596 966 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 TNNQ9UQP3 1299 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 COG6Q9Y2V7 657 aa4.97□□□□□ -1.61
RTN4-209ENST00000405240 LRRC37A3O60309 1634 aa4.96□□□□□ -1.61
RTN4-209ENST00000405240 SEC24BO95487 1268 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 CHGAP10645 457 aaKnown RBP4.96□□□□□ -1.62
RTN4-209ENST00000405240 ALDH1L2Q3SY69 923 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 NPM2Q86SE8 214 aaKnown RBP4.96□□□□□ -1.62
RTN4-209ENST00000405240 ANTXR1Q9H6X2 564 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 TERF2IPQ9NYB0 399 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 ZNF853P0CG23 659 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 ADRA2BP18089 450 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 NFKBIBQ15653 356 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 ZNF428Q96B54 188 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 PRAM1Q96QH2 718 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 RSPH6AQ9H0K4 717 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 RRP7AQ9Y3A4 280 aaKnown RBP4.96□□□□□ -1.62
RTN4-209ENST00000405240 FCHSD2O94868 740 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 TBC1D32Q96NH3 1257 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 CDK19Q9BWU1 502 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 NCOA3Q9Y6Q9 1424 aa4.96□□□□□ -1.62
RTN4-209ENST00000405240 NEFMP07197 916 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 ZKSCAN2Q63HK3 967 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 SMC5Q8IY18 1101 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 PDZRN3Q9UPQ7 1066 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 RWDD1Q9H446 243 aaPredicted RBP4.95□□□□□ -1.62
RTN4-209ENST00000405240 ZBTB40Q9NUA8 1239 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 KIF24Q5T7B8 1368 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 TRIM27P14373 513 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 FBXO31Q5XUX0 539 aaPredicted RBP4.95□□□□□ -1.62
RTN4-209ENST00000405240 DZIP1LQ8IYY4 767 aaKnown RBP4.95□□□□□ -1.62
RTN4-209ENST00000405240 PNNQ9H307 717 aaKnown RBP4.95□□□□□ -1.62
RTN4-209ENST00000405240 POLKQ9UBT6 870 aa4.95□□□□□ -1.62
RTN4-209ENST00000405240 SSH2Q76I76 1423 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 U2AF1L5P0DN76 240 aaPredicted RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 U2AF1Q01081 240 aaKnown RBP eCLIP4.94□□□□□ -1.624e-6■□□□□ 9.4
RTN4-209ENST00000405240 RTL5Q5HYW3 569 aaPredicted RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 SSH1Q8WYL5 1049 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 ARHGAP45Q92619 1136 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 IL13P35225 146 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 EXOSC9Q06265 439 aaKnown RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 NUTM2DQ5VT03 806 aaPredicted RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 ATF7IPQ6VMQ6 1270 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 LAS1LQ9Y4W2 734 aaKnown RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 XRN1Q8IZH2 1706 aaKnown RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 DIAPH1O60610 1272 aaKnown RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 TNNT2P45379 298 aaPredicted RBP4.94□□□□□ -1.62
RTN4-209ENST00000405240 RGS3P49796 1198 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 GGNBP2Q9H3C7 697 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 CACNA1FO60840 1977 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 DIP2AQ14689 1571 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 SLIT1O75093 1534 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 ADAMTS13Q76LX8 1427 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 METP08581 1390 aa4.94□□□□□ -1.62
RTN4-209ENST00000405240 DDX19BQ9UMR2 479 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 OVOS2A0A0J9YW53 1432 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 OVOS2Q6IE36 1432 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 KCNA4P22459 653 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 DDIT3P35638 169 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 HDGFL2Q7Z4V5 671 aaPredicted RBP4.93□□□□□ -1.62
RTN4-209ENST00000405240 CABP1Q9NZU7 370 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 RGPD8O14715 1765 aaPredicted RBP4.93□□□□□ -1.62
RTN4-209ENST00000405240 ARHGAP23Q9P227 1491 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 ABCC4O15439 1325 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 MINK1Q8N4C8 1332 aaPredicted RBP4.93□□□□□ -1.62
RTN4-209ENST00000405240 SRPK2P78362 688 aaKnown RBP4.93□□□□□ -1.62
RTN4-209ENST00000405240 GSE1Q14687 1217 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 TSR2Q969E8 191 aaKnown RBP4.93□□□□□ -1.62
RTN4-209ENST00000405240 RGS12O14924 1447 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 USP31Q70CQ4 1352 aa4.93□□□□□ -1.62
RTN4-209ENST00000405240 KIF16BQ96L93 1317 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms