RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 ATF3P18847 181 aa15.76■□□□□ 0.11
SKA3-203ENST00000400018 C19orf44Q9H6X5 657 aa15.76■□□□□ 0.11
SKA3-203ENST00000400018 ADAMTS8Q9UP79 889 aa15.76■□□□□ 0.11
SKA3-203ENST00000400018 TTC21BQ7Z4L5 1316 aa15.76■□□□□ 0.11
SKA3-203ENST00000400018 ADGRL3Q9HAR2 1447 aa15.76■□□□□ 0.11
SKA3-203ENST00000400018 PSME1Q06323 249 aa15.75■□□□□ 0.11
SKA3-203ENST00000400018 CPSF1Q10570 1443 aaKnown RBP15.75■□□□□ 0.11
SKA3-203ENST00000400018 CABLES1Q8TDN4 633 aa15.74■□□□□ 0.11
SKA3-203ENST00000400018 PLEKHG3A1L390 1219 aa15.74■□□□□ 0.11
SKA3-203ENST00000400018 ABTB2Q8N961 1025 aa15.74■□□□□ 0.11
SKA3-203ENST00000400018 NLRP6P59044 892 aa15.73■□□□□ 0.11
SKA3-203ENST00000400018 PUS7Q96PZ0 661 aaKnown RBP15.72■□□□□ 0.11
SKA3-203ENST00000400018 NEUROD2Q15784 382 aa15.71■□□□□ 0.11
SKA3-203ENST00000400018 USP6P35125 1406 aa15.71■□□□□ 0.11
SKA3-203ENST00000400018 LRRC7Q96NW7 1537 aa15.71■□□□□ 0.1
SKA3-203ENST00000400018 ADGRB2O60241 1585 aa15.7■□□□□ 0.1
SKA3-203ENST00000400018 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
SKA3-203ENST00000400018 U2SURPO15042 1029 aaKnown RBP15.7■□□□□ 0.1
SKA3-203ENST00000400018 COG3Q96JB2 828 aa15.7■□□□□ 0.1
SKA3-203ENST00000400018 RRP7AQ9Y3A4 280 aaKnown RBP15.7■□□□□ 0.1
SKA3-203ENST00000400018 POLKQ9UBT6 870 aa15.7■□□□□ 0.1
SKA3-203ENST00000400018 FMN2Q9NZ56 1722 aa15.69■□□□□ 0.1
SKA3-203ENST00000400018 XIRP1Q702N8 1843 aaKnown RBP15.69■□□□□ 0.1
SKA3-203ENST00000400018 PIP4K2BP78356 416 aa15.69■□□□□ 0.1
SKA3-203ENST00000400018 LTV1Q96GA3 475 aaPredicted RBP15.69■□□□□ 0.1
SKA3-203ENST00000400018 NWD1Q149M9 1564 aa15.68■□□□□ 0.1
SKA3-203ENST00000400018 C1orf167Q5SNV9 1468 aa15.68■□□□□ 0.1
SKA3-203ENST00000400018 BRD4O60885 1362 aaPredicted RBP15.68■□□□□ 0.1
SKA3-203ENST00000400018 HMOX1P09601 288 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 KRT28Q7Z3Y7 464 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 EDC4Q6P2E9 1401 aaKnown RBP15.67■□□□□ 0.1
SKA3-203ENST00000400018 MSH6P52701 1360 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 ZNF692Q9BU19 519 aaPredicted RBP15.67■□□□□ 0.1
SKA3-203ENST00000400018 SLAIN2Q9P270 581 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 HSP90AB2PQ58FF8 381 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 BRINP3Q76B58 766 aa15.67■□□□□ 0.1
SKA3-203ENST00000400018 TOPAZ1Q8N9V7 1692 aa15.66■□□□□ 0.1
SKA3-203ENST00000400018 MST1RQ04912 1400 aa15.66■□□□□ 0.1
SKA3-203ENST00000400018 WDR43Q15061 677 aaKnown RBP eCLIP15.66■□□□□ 0.1
SKA3-203ENST00000400018 ITSN1Q15811 1721 aa15.66■□□□□ 0.1
SKA3-203ENST00000400018 NINLQ9Y2I6 1382 aa15.66■□□□□ 0.1
SKA3-203ENST00000400018 U2AF1L5P0DN76 240 aaPredicted RBP15.65■□□□□ 0.1
SKA3-203ENST00000400018 ZC3H6P61129 1189 aaKnown RBP15.65■□□□□ 0.1
SKA3-203ENST00000400018 U2AF1Q01081 240 aaKnown RBP eCLIP15.65■□□□□ 0.1
SKA3-203ENST00000400018 CADPS2Q86UW7 1296 aa15.64■□□□□ 0.09
SKA3-203ENST00000400018 POLR3AO14802 1390 aaPredicted RBP15.64■□□□□ 0.09
SKA3-203ENST00000400018 AKAP12Q02952 1782 aa15.63■□□□□ 0.09
SKA3-203ENST00000400018 CDCA7LQ96GN5 454 aa15.63■□□□□ 0.09
SKA3-203ENST00000400018 MON2Q7Z3U7 1717 aa15.62■□□□□ 0.09
SKA3-203ENST00000400018 NPC1L1Q9UHC9 1359 aa15.62■□□□□ 0.09
SKA3-203ENST00000400018 APAF1O14727 1248 aa15.62■□□□□ 0.09
SKA3-203ENST00000400018 SSH2Q76I76 1423 aa15.62■□□□□ 0.09
SKA3-203ENST00000400018 MAP2P11137 1827 aaKnown RBP15.62■□□□□ 0.09
SKA3-203ENST00000400018 KIF20BQ96Q89 1820 aa15.62■□□□□ 0.09
SKA3-203ENST00000400018 MAP3K19Q56UN5 1328 aa15.61■□□□□ 0.09
SKA3-203ENST00000400018 AEBP1Q8IUX7 1158 aa15.61■□□□□ 0.09
SKA3-203ENST00000400018 USHBP1Q8N6Y0 703 aa15.61■□□□□ 0.09
SKA3-203ENST00000400018 DMRT2Q9Y5R5 561 aa15.61■□□□□ 0.09
SKA3-203ENST00000400018 CHRNA2Q15822 529 aa15.6■□□□□ 0.09
SKA3-203ENST00000400018 PIK3C2AO00443 1686 aa15.6■□□□□ 0.09
SKA3-203ENST00000400018 ANKARQ7Z5J8 1434 aa15.6■□□□□ 0.09
SKA3-203ENST00000400018 IRX6P78412 446 aaPredicted RBP15.59■□□□□ 0.09
SKA3-203ENST00000400018 NRKQ7Z2Y5 1582 aa15.58■□□□□ 0.09
SKA3-203ENST00000400018 AMPHP49418 695 aa15.58■□□□□ 0.08
SKA3-203ENST00000400018 OVOS2A0A0J9YW53 1432 aa15.57■□□□□ 0.08
SKA3-203ENST00000400018 OVOS2Q6IE36 1432 aa15.57■□□□□ 0.08
SKA3-203ENST00000400018 DIAPH1O60610 1272 aaKnown RBP15.56■□□□□ 0.08
SKA3-203ENST00000400018 LRRC59Q96AG4 307 aaKnown RBP15.56■□□□□ 0.08
SKA3-203ENST00000400018 AXIN2Q9Y2T1 843 aa15.56■□□□□ 0.08
SKA3-203ENST00000400018 EIF4A2Q14240 407 aaKnown RBP15.56■□□□□ 0.08
SKA3-203ENST00000400018 PHACTR3Q96KR7 559 aa15.56■□□□□ 0.08
SKA3-203ENST00000400018 SPINK5Q9NQ38 1064 aaPredicted RBP15.56■□□□□ 0.08
SKA3-203ENST00000400018 GCP02774 474 aa15.55■□□□□ 0.08
SKA3-203ENST00000400018 CFAP53Q96M91 514 aa15.55■□□□□ 0.08
SKA3-203ENST00000400018 NSD2O96028 1365 aa15.55■□□□□ 0.08
SKA3-203ENST00000400018 THUMPD2Q9BTF0 503 aaKnown RBP15.53■□□□□ 0.08
SKA3-203ENST00000400018 TTC21AQ8NDW8 1320 aa15.53■□□□□ 0.08
SKA3-203ENST00000400018 PEAK1Q9H792 1746 aa15.53■□□□□ 0.08
SKA3-203ENST00000400018 ANP32EQ9BTT0 268 aa15.53■□□□□ 0.08
SKA3-203ENST00000400018 SHPRHQ149N8 1683 aa15.53■□□□□ 0.08
SKA3-203ENST00000400018 LTBP4Q8N2S1 1624 aa15.53■□□□□ 0.08
SKA3-203ENST00000400018 UBAP1LF5GYI3 381 aa15.52■□□□□ 0.08
SKA3-203ENST00000400018 PRKAR2BP31323 418 aa15.52■□□□□ 0.08
SKA3-203ENST00000400018 IL13P35225 146 aa15.52■□□□□ 0.08
SKA3-203ENST00000400018 SULT6B1Q6IMI4 303 aa15.52■□□□□ 0.08
SKA3-203ENST00000400018 TCP11L2Q8N4U5 519 aa15.52■□□□□ 0.08
SKA3-203ENST00000400018 NPHP3Q7Z494 1330 aa15.51■□□□□ 0.07
SKA3-203ENST00000400018 ANKRD26Q9UPS8 1709 aa15.51■□□□□ 0.07
SKA3-203ENST00000400018 MARF1Q9Y4F3 1742 aaKnown RBP15.51■□□□□ 0.07
SKA3-203ENST00000400018 COL3A1P02461 1466 aaPredicted RBP15.51■□□□□ 0.07
SKA3-203ENST00000400018 HOXC9P31274 260 aa15.51■□□□□ 0.07
SKA3-203ENST00000400018 DCTN1Q14203 1278 aa15.51■□□□□ 0.07
SKA3-203ENST00000400018 FAM83GA6ND36 823 aa15.5■□□□□ 0.07
SKA3-203ENST00000400018 HAP1P54257 671 aaPredicted RBP15.49■□□□□ 0.07
SKA3-203ENST00000400018 SUPT16HQ9Y5B9 1047 aaKnown RBP15.49■□□□□ 0.07
SKA3-203ENST00000400018 NUTM2BA6NNL0 878 aaPredicted RBP15.48■□□□□ 0.07
SKA3-203ENST00000400018 NUTM2EB1AL46 878 aaPredicted RBP15.48■□□□□ 0.07
SKA3-203ENST00000400018 NUTM2AQ8IVF1 878 aaPredicted RBP15.48■□□□□ 0.07
SKA3-203ENST00000400018 EYA1Q99502 592 aa15.48■□□□□ 0.07
SKA3-203ENST00000400018 SPATA31A3Q5VYP0 1347 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 202.6 ms