RNA–Protein interactions for RNA: ENST00000399976.6

USP16-204, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP16, Length 2,963 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-204ENST00000399976 SPATA31A3Q5VYP0 1347 aa10.53□□□□□ -0.72
USP16-204ENST00000399976 HSPA5P11021 654 aaKnown RBP10.53□□□□□ -0.72
USP16-204ENST00000399976 COL18A1P39060 1754 aa10.52□□□□□ -0.73
USP16-204ENST00000399976 USP19O94966 1318 aa10.52□□□□□ -0.73
USP16-204ENST00000399976 NFAT5O94916 1531 aa10.52□□□□□ -0.73
USP16-204ENST00000399976 WNK3Q9BYP7 1800 aa10.52□□□□□ -0.73
USP16-204ENST00000399976 OVOS2A0A0J9YW53 1432 aa10.51□□□□□ -0.73
USP16-204ENST00000399976 OVOS2Q6IE36 1432 aa10.51□□□□□ -0.73
USP16-204ENST00000399976 LTN1O94822 1766 aa10.51□□□□□ -0.73
USP16-204ENST00000399976 TERF2IPQ9NYB0 399 aa10.51□□□□□ -0.73
USP16-204ENST00000399976 CAMTA1Q9Y6Y1 1673 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 KIF24Q5T7B8 1368 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 SRPK2P78362 688 aaKnown RBP10.5□□□□□ -0.73
USP16-204ENST00000399976 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 CPDO75976 1380 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 ACEP12821 1306 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 SCAF1Q9H7N4 1312 aaKnown RBP10.5□□□□□ -0.73
USP16-204ENST00000399976 CCDC7Q96M83 1385 aa10.5□□□□□ -0.73
USP16-204ENST00000399976 A0A1W2PP64 1363 aa10.49□□□□□ -0.73
USP16-204ENST00000399976 ORAI2Q96SN7 254 aa10.49□□□□□ -0.73
USP16-204ENST00000399976 PLEKHG2Q9H7P9 1386 aa10.49□□□□□ -0.73
USP16-204ENST00000399976 WASHC2AQ641Q2 1341 aa10.49□□□□□ -0.73
USP16-204ENST00000399976 HDGFL2Q7Z4V5 671 aaPredicted RBP10.48□□□□□ -0.73
USP16-204ENST00000399976 KTN1Q86UP2 1357 aaKnown RBP10.48□□□□□ -0.73
USP16-204ENST00000399976 SMG6Q86US8 1419 aaKnown RBP10.48□□□□□ -0.73
USP16-204ENST00000399976 KRT28Q7Z3Y7 464 aa10.47□□□□□ -0.73
USP16-204ENST00000399976 RBM33Q96EV2 1170 aaKnown RBP10.47□□□□□ -0.73
USP16-204ENST00000399976 CABP2Q9NPB3 220 aa10.47□□□□□ -0.73
USP16-204ENST00000399976 HIRIP3Q9BW71 556 aaPredicted RBP10.47□□□□□ -0.73
USP16-204ENST00000399976 HSPA1LP34931 641 aa10.47□□□□□ -0.73
USP16-204ENST00000399976 LRP6O75581 1613 aa10.46□□□□□ -0.73
USP16-204ENST00000399976 SAFB2Q14151 953 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP16-204ENST00000399976 CDK12Q9NYV4 1490 aaPredicted RBP10.46□□□□□ -0.74
USP16-204ENST00000399976 SENP3Q9H4L4 574 aaPredicted RBP10.46□□□□□ -0.74
USP16-204ENST00000399976 RTL1A6NKG5 1358 aa10.46□□□□□ -0.74
USP16-204ENST00000399976 SLIT2O94813 1529 aa10.46□□□□□ -0.74
USP16-204ENST00000399976 KIF7Q2M1P5 1343 aa10.45□□□□□ -0.74
USP16-204ENST00000399976 TTC21BQ7Z4L5 1316 aa10.45□□□□□ -0.74
USP16-204ENST00000399976 NGDNQ8NEJ9 315 aaKnown RBP10.45□□□□□ -0.74
USP16-204ENST00000399976 CABP1Q9NZU7 370 aa10.45□□□□□ -0.74
USP16-204ENST00000399976 AATKQ6ZMQ8 1374 aa10.45□□□□□ -0.74
USP16-204ENST00000399976 ILDR1Q86SU0 546 aaPredicted RBP10.44□□□□□ -0.74
USP16-204ENST00000399976 CGNL1Q0VF96 1302 aa10.44□□□□□ -0.74
USP16-204ENST00000399976 PIP4K2BP78356 416 aa10.43□□□□□ -0.74
USP16-204ENST00000399976 FOXO3O43524 673 aa10.42□□□□□ -0.74
USP16-204ENST00000399976 KCNH5Q8NCM2 988 aa10.42□□□□□ -0.74
USP16-204ENST00000399976 MAP2P11137 1827 aaKnown RBP10.42□□□□□ -0.74
USP16-204ENST00000399976 BLMP54132 1417 aaPredicted RBP10.42□□□□□ -0.74
USP16-204ENST00000399976 NLRP13Q86W25 1043 aa10.42□□□□□ -0.74
USP16-204ENST00000399976 PARP4Q9UKK3 1724 aaKnown RBP10.42□□□□□ -0.74
USP16-204ENST00000399976 NSD3Q9BZ95 1437 aa10.41□□□□□ -0.74
USP16-204ENST00000399976 THSD7AQ9UPZ6 1657 aa10.41□□□□□ -0.74
USP16-204ENST00000399976 RGPD1P0DJD0 1748 aa10.41□□□□□ -0.74
USP16-204ENST00000399976 NCAPD2Q15021 1401 aa10.4□□□□□ -0.74
USP16-204ENST00000399976 RGPD5Q99666 1765 aa10.4□□□□□ -0.74
USP16-204ENST00000399976 PEAK1Q9H792 1746 aa10.4□□□□□ -0.75
USP16-204ENST00000399976 INSRP06213 1382 aa10.4□□□□□ -0.75
USP16-204ENST00000399976 ATRNO75882 1429 aa10.4□□□□□ -0.75
USP16-204ENST00000399976 PMFBP1Q8TBY8 1022 aa10.39□□□□□ -0.75
USP16-204ENST00000399976 SLC12A5Q9H2X9 1139 aa10.39□□□□□ -0.75
USP16-204ENST00000399976 FNBP4Q8N3X1 1017 aaPredicted RBP10.39□□□□□ -0.75
USP16-204ENST00000399976 C11orf95C9JLR9 678 aaPredicted RBP10.38□□□□□ -0.75
USP16-204ENST00000399976 PER1O15534 1290 aaPredicted RBP10.38□□□□□ -0.75
USP16-204ENST00000399976 CARD14Q9BXL6 1004 aa10.36□□□□□ -0.75
USP16-204ENST00000399976 PKD1L3Q7Z443 1732 aa10.36□□□□□ -0.75
USP16-204ENST00000399976 COL5A2P05997 1499 aaPredicted RBP10.36□□□□□ -0.75
USP16-204ENST00000399976 BCL9LQ86UU0 1499 aa10.36□□□□□ -0.75
USP16-204ENST00000399976 ABTB2Q8N961 1025 aa10.35□□□□□ -0.75
USP16-204ENST00000399976 FYB1O15117 783 aa10.35□□□□□ -0.75
USP16-204ENST00000399976 GLI3P10071 1580 aa10.35□□□□□ -0.75
USP16-204ENST00000399976 NUTM2FA1L443 756 aa10.35□□□□□ -0.75
USP16-204ENST00000399976 AMER1Q5JTC6 1135 aaPredicted RBP10.35□□□□□ -0.75
USP16-204ENST00000399976 ZNF772Q68DY9 489 aaPredicted RBP10.35□□□□□ -0.75
USP16-204ENST00000399976 TMC1Q8TDI8 760 aa10.35□□□□□ -0.75
USP16-204ENST00000399976 RGPD3A6NKT7 1758 aaPredicted RBP10.34□□□□□ -0.75
USP16-204ENST00000399976 RGPD4Q7Z3J3 1758 aa10.34□□□□□ -0.75
USP16-204ENST00000399976 ARHGEF25Q86VW2 580 aa10.34□□□□□ -0.75
USP16-204ENST00000399976 COG3Q96JB2 828 aa10.34□□□□□ -0.75
USP16-204ENST00000399976 GCP02774 474 aa10.33□□□□□ -0.76
USP16-204ENST00000399976 DDX17Q92841 729 aaKnown RBP10.33□□□□□ -0.76
USP16-204ENST00000399976 PANK3Q9H999 370 aa10.33□□□□□ -0.76
USP16-204ENST00000399976 PARD3Q8TEW0 1356 aa10.33□□□□□ -0.76
USP16-204ENST00000399976 FLT4P35916 1363 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 COL3A1P02461 1466 aaPredicted RBP10.32□□□□□ -0.76
USP16-204ENST00000399976 SHANK3Q9BYB0 1731 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 KNSTRNQ9Y448 316 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 LRRC37A3O60309 1634 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 NLRP6P59044 892 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 THRAP3Q9Y2W1 955 aaKnown RBP10.32□□□□□ -0.76
USP16-204ENST00000399976 BCL9O00512 1426 aa10.32□□□□□ -0.76
USP16-204ENST00000399976 KIAA0232Q92628 1395 aa10.31□□□□□ -0.76
USP16-204ENST00000399976 CRB1P82279 1406 aa10.31□□□□□ -0.76
USP16-204ENST00000399976 ZNF316A6NFI3 1004 aaPredicted RBP10.31□□□□□ -0.76
USP16-204ENST00000399976 VPS72Q15906 364 aa10.31□□□□□ -0.76
USP16-204ENST00000399976 RGPD2P0DJD1 1756 aa10.3□□□□□ -0.76
USP16-204ENST00000399976 NME9Q86XW9 330 aa10.3□□□□□ -0.76
USP16-204ENST00000399976 DISP2A7MBM2 1401 aa10.3□□□□□ -0.76
USP16-204ENST00000399976 ADAMTS7Q9UKP4 1686 aa10.3□□□□□ -0.76
USP16-204ENST00000399976 ONECUT3O60422 494 aaPredicted RBP10.29□□□□□ -0.76
USP16-204ENST00000399976 PAK3O75914 559 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms