RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 GPATCH3Q96I76 525 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 ANKRD50Q9ULJ7 1429 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 NAP1L1P55209 391 aaKnown RBP11.45□□□□□ -0.58
SMAD9-203ENST00000399275 TMCO3Q6UWJ1 677 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 FBXO3Q9UK99 471 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 WDR66Q8TBY9 1149 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 KIF20AO95235 890 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 CCDC102AQ96A19 550 aa11.45□□□□□ -0.58
SMAD9-203ENST00000399275 NOL10Q9BSC4 688 aaKnown RBP11.45□□□□□ -0.58
SMAD9-203ENST00000399275 SUPT6HQ7KZ85 1726 aaKnown RBP11.44□□□□□ -0.58
SMAD9-203ENST00000399275 EFCAB2Q5VUJ9 269 aa11.44□□□□□ -0.58
SMAD9-203ENST00000399275 MICALCLQ6ZW33 695 aa11.44□□□□□ -0.58
SMAD9-203ENST00000399275 SPDYE4A6NLX3 237 aa11.44□□□□□ -0.58
SMAD9-203ENST00000399275 RABEP1Q15276 862 aa11.44□□□□□ -0.58
SMAD9-203ENST00000399275 API5Q9BZZ5 524 aaKnown RBP11.44□□□□□ -0.58
SMAD9-203ENST00000399275 CWC22Q9HCG8 908 aaKnown RBP11.44□□□□□ -0.58
SMAD9-203ENST00000399275 AQRO60306 1485 aaKnown RBP eCLIP11.44□□□□□ -0.58
SMAD9-203ENST00000399275 SCAPERQ9BY12 1400 aa11.43□□□□□ -0.58
SMAD9-203ENST00000399275 SENP3Q9H4L4 574 aaPredicted RBP11.43□□□□□ -0.58
SMAD9-203ENST00000399275 CHMP3Q9Y3E7 222 aa11.43□□□□□ -0.58
SMAD9-203ENST00000399275 TSPY26PQ9H489 355 aa11.43□□□□□ -0.58
SMAD9-203ENST00000399275 SWAP70Q9UH65 585 aa11.43□□□□□ -0.58
SMAD9-203ENST00000399275 HMGXB3Q12766 1538 aa11.43□□□□□ -0.58
SMAD9-203ENST00000399275 CLCN1P35523 988 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 LNPKQ9C0E8 428 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 SEPT6Q14141 434 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 ANKRD20A12PQ8NF67 263 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 TRIM5Q9C035 493 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 RASSF4Q9H2L5 321 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 SPAG9O60271 1321 aaKnown RBP11.42□□□□□ -0.58
SMAD9-203ENST00000399275 TTC31Q49AM3 519 aaPredicted RBP11.42□□□□□ -0.58
SMAD9-203ENST00000399275 K7ELQ4 463 aaPredicted RBP11.42□□□□□ -0.58
SMAD9-203ENST00000399275 TXLNBQ8N3L3 684 aa11.42□□□□□ -0.58
SMAD9-203ENST00000399275 LRRCC1Q9C099 1032 aa11.41□□□□□ -0.58
SMAD9-203ENST00000399275 POLR3GO15318 223 aaPredicted RBP11.41□□□□□ -0.58
SMAD9-203ENST00000399275 MCM2P49736 904 aa11.41□□□□□ -0.58
SMAD9-203ENST00000399275 SPATA24Q86W54 205 aa11.41□□□□□ -0.58
SMAD9-203ENST00000399275 GCC1Q96CN9 775 aa11.41□□□□□ -0.58
SMAD9-203ENST00000399275 SLC26A8Q96RN1 970 aa11.41□□□□□ -0.58
SMAD9-203ENST00000399275 BCAR3O75815 825 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 CNPY4Q8N129 248 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 PAF1Q8N7H5 531 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 UBXN4Q92575 508 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 GAPVD1Q14C86 1478 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 PEG3Q9GZU2 1588 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 SLFN5Q08AF3 891 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 LRCH2Q5VUJ6 765 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 CHMP4CQ96CF2 233 aa11.4□□□□□ -0.58
SMAD9-203ENST00000399275 MYCBPQ99417 103 aaPredicted RBP11.4□□□□□ -0.58
SMAD9-203ENST00000399275 SAFB2Q14151 953 aaKnown RBP eCLIP11.39□□□□□ -0.59
SMAD9-203ENST00000399275 RNF168Q8IYW5 571 aaPredicted RBP11.39□□□□□ -0.59
SMAD9-203ENST00000399275 RASSF8Q8NHQ8 419 aa11.39□□□□□ -0.59
SMAD9-203ENST00000399275 WDR63Q8IWG1 891 aa11.39□□□□□ -0.59
SMAD9-203ENST00000399275 EVC2Q86UK5 1308 aa11.39□□□□□ -0.59
SMAD9-203ENST00000399275 PCF11O94913 1555 aaKnown RBP11.39□□□□□ -0.59
SMAD9-203ENST00000399275 ANKRD30BQ9BXX2 1392 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 H3BQV1 296 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 PRPF40AO75400 957 aaKnown RBP11.38□□□□□ -0.59
SMAD9-203ENST00000399275 IFFO2Q5TF58 517 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 GBP6Q6ZN66 633 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 CCAR1Q8IX12 1150 aaKnown RBP11.38□□□□□ -0.59
SMAD9-203ENST00000399275 RILPL2Q969X0 211 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 NESP48681 1621 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 PTPN23Q9H3S7 1636 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 BICD2Q8TD16 824 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 NUP133Q8WUM0 1156 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 FAM114A1Q8IWE2 563 aa11.38□□□□□ -0.59
SMAD9-203ENST00000399275 CCDC94Q9BW85 323 aaPredicted RBP11.38□□□□□ -0.59
SMAD9-203ENST00000399275 ZNF644Q9H582 1327 aaPredicted RBP11.38□□□□□ -0.59
SMAD9-203ENST00000399275 RNF187Q5TA31 235 aaPredicted RBP11.37□□□□□ -0.59
SMAD9-203ENST00000399275 SPC24Q8NBT2 197 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 DAPK1P53355 1430 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 MVPQ14764 893 aaKnown RBP11.37□□□□□ -0.59
SMAD9-203ENST00000399275 ERBINQ96RT1 1412 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 A0A1B0GUA9 196 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 RIPK4P57078 832 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 SLC4A10Q6U841 1118 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 KRT222Q8N1A0 295 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 RBM33Q96EV2 1170 aaKnown RBP11.37□□□□□ -0.59
SMAD9-203ENST00000399275 TCHPQ9BT92 498 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 IVLP07476 585 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 EZRP15311 586 aaKnown RBP11.37□□□□□ -0.59
SMAD9-203ENST00000399275 LUZP1Q86V48 1076 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 HECW1Q76N89 1606 aa11.37□□□□□ -0.59
SMAD9-203ENST00000399275 XPCQ01831 940 aaPredicted RBP11.36□□□□□ -0.59
SMAD9-203ENST00000399275 PCMTD1Q96MG8 357 aaPredicted RBP11.36□□□□□ -0.59
SMAD9-203ENST00000399275 BIVM-ERCC5R4GMW8 1640 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 LMAN1P49257 510 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 TCP11L2Q8N4U5 519 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 RUFY2Q8WXA3 655 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 STK26Q9P289 416 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 MCM5P33992 734 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 C10orf67Q8IYJ2 551 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 TBC1D2Q9BYX2 928 aa11.36□□□□□ -0.59
SMAD9-203ENST00000399275 NKTRP30414 1462 aaKnown RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 AP1ARQ63HQ0 302 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 MPNDQ8N594 471 aa11.35□□□□□ -0.59
SMAD9-203ENST00000399275 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 VGFO15240 615 aaPredicted RBP11.35□□□□□ -0.59
SMAD9-203ENST00000399275 DIAPH1O60610 1272 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms