RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ADAMTS8Q9UP79 889 aa13.71□□□□□ -0.21
TTC28-201ENST00000397906 ADAMTS2O95450 1211 aa13.71□□□□□ -0.21
TTC28-201ENST00000397906 MAP4K4O95819 1239 aaPredicted RBP13.71□□□□□ -0.21
TTC28-201ENST00000397906 EPS15P42566 896 aa13.71□□□□□ -0.22
TTC28-201ENST00000397906 ZFYVE27Q5T4F4 411 aa13.7□□□□□ -0.22
TTC28-201ENST00000397906 TCP11L2Q8N4U5 519 aa13.7□□□□□ -0.22
TTC28-201ENST00000397906 SLC12A5Q9H2X9 1139 aa13.7□□□□□ -0.22
TTC28-201ENST00000397906 CCDC85AQ96PX6 553 aaPredicted RBP13.7□□□□□ -0.22
TTC28-201ENST00000397906 NBPF1Q3BBV0 1214 aa13.7□□□□□ -0.22
TTC28-201ENST00000397906 RTEL1-TNFRSF6BF6WH68 1400 aa13.7□□□□□ -0.22
TTC28-201ENST00000397906 TSR2Q969E8 191 aaKnown RBP13.69□□□□□ -0.22
TTC28-201ENST00000397906 POGZQ7Z3K3 1410 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 CCDC7Q96M83 1385 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 BCL11BQ9C0K0 894 aaPredicted RBP13.69□□□□□ -0.22
TTC28-201ENST00000397906 C9orf84Q5VXU9 1444 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 SLC4A2P04920 1241 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 XBP1P17861 261 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 SART3Q15020 963 aaKnown RBP13.69□□□□□ -0.22
TTC28-201ENST00000397906 PATL2C9JE40 543 aaKnown RBP13.69□□□□□ -0.22
TTC28-201ENST00000397906 HDGFL1Q5TGJ6 251 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 ERBINQ96RT1 1412 aa13.69□□□□□ -0.22
TTC28-201ENST00000397906 CLASRPQ8N2M8 674 aaKnown RBP13.69□□□□□ -0.22
TTC28-201ENST00000397906 CASKIN1Q8WXD9 1431 aa13.68□□□□□ -0.22
TTC28-201ENST00000397906 TWISTNBQ3B726 338 aaPredicted RBP13.68□□□□□ -0.22
TTC28-201ENST00000397906 CCDC158Q5M9N0 1113 aa13.68□□□□□ -0.22
TTC28-201ENST00000397906 MPHOSPH8Q99549 860 aa13.68□□□□□ -0.22
TTC28-201ENST00000397906 GNL3LQ9NVN8 582 aaKnown RBP13.68□□□□□ -0.22
TTC28-201ENST00000397906 SLC3A2P08195 630 aaKnown RBP13.68□□□□□ -0.22
TTC28-201ENST00000397906 BTBD11A6QL63 1104 aa13.68□□□□□ -0.22
TTC28-201ENST00000397906 IBSPP21815 317 aaPredicted RBP13.68□□□□□ -0.22
TTC28-201ENST00000397906 CCDC70Q6NSX1 233 aa13.68□□□□□ -0.22
TTC28-201ENST00000397906 ZSCAN29Q8IWY8 852 aaPredicted RBP13.68□□□□□ -0.22
TTC28-201ENST00000397906 IFT140Q96RY7 1462 aa13.67□□□□□ -0.22
TTC28-201ENST00000397906 EXOSC9Q06265 439 aaKnown RBP13.67□□□□□ -0.22
TTC28-201ENST00000397906 CDK5RAP3Q96JB5 506 aa13.67□□□□□ -0.22
TTC28-201ENST00000397906 SASS6Q6UVJ0 657 aa13.66□□□□□ -0.22
TTC28-201ENST00000397906 WWC2Q6AWC2 1192 aa13.66□□□□□ -0.22
TTC28-201ENST00000397906 HOMER1Q86YM7 354 aa13.66□□□□□ -0.22
TTC28-201ENST00000397906 TSHZ2Q9NRE2 1034 aa13.66□□□□□ -0.22
TTC28-201ENST00000397906 PSMA5P28066 241 aa13.65□□□□□ -0.22
TTC28-201ENST00000397906 GNAI3P08754 354 aa13.65□□□□□ -0.22
TTC28-201ENST00000397906 FKBP4Q02790 459 aaKnown RBP eCLIP13.65□□□□□ -0.22
TTC28-201ENST00000397906 HECW1Q76N89 1606 aa13.65□□□□□ -0.22
TTC28-201ENST00000397906 NOB1Q9ULX3 412 aaKnown RBP13.65□□□□□ -0.22
TTC28-201ENST00000397906 CCDC73Q6ZRK6 1079 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 CCDC57Q2TAC2 916 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 NCAPD3P42695 1498 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 KRT18P05783 430 aaKnown RBP13.64□□□□□ -0.23
TTC28-201ENST00000397906 PAF1Q8N7H5 531 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 ZNF692Q9BU19 519 aaPredicted RBP13.64□□□□□ -0.23
TTC28-201ENST00000397906 PTCD1O75127 700 aaKnown RBP13.64□□□□□ -0.23
TTC28-201ENST00000397906 CEBPZQ03701 1054 aaKnown RBP13.64□□□□□ -0.23
TTC28-201ENST00000397906 PPP2R1AP30153 589 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
TTC28-201ENST00000397906 SKOR2Q2VWA4 1001 aaPredicted RBP13.63□□□□□ -0.23
TTC28-201ENST00000397906 STK3Q13188 491 aa13.63□□□□□ -0.23
TTC28-201ENST00000397906 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.63□□□□□ -0.23
TTC28-201ENST00000397906 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
TTC28-201ENST00000397906 CDC45O75419 566 aa13.63□□□□□ -0.23
TTC28-201ENST00000397906 PDILTQ8N807 584 aa13.63□□□□□ -0.23
TTC28-201ENST00000397906 GNAI2P04899 355 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 PAXIP1Q6ZW49 1069 aaPredicted RBP13.62□□□□□ -0.23
TTC28-201ENST00000397906 CDCA7LQ96GN5 454 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 ERICH3Q5RHP9 1530 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 MIS18AQ9NYP9 233 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 TNNT3P45378 269 aaPredicted RBP13.62□□□□□ -0.23
TTC28-201ENST00000397906 SYNJ1O43426 1573 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 USHBP1Q8N6Y0 703 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 NUP133Q8WUM0 1156 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 TTLL5Q6EMB2 1281 aa13.62□□□□□ -0.23
TTC28-201ENST00000397906 C22orf23Q9BZE7 217 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 EHBP1L1Q8N3D4 1523 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 OFD1O75665 1012 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 CHMP4BP1P59074 171 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 HSP90AB2PQ58FF8 381 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 PIBF1Q8WXW3 757 aa13.61□□□□□ -0.23
TTC28-201ENST00000397906 MPHOSPH10O00566 681 aaKnown RBP13.61□□□□□ -0.23
TTC28-201ENST00000397906 WAPLQ7Z5K2 1190 aa13.6□□□□□ -0.23
TTC28-201ENST00000397906 TOPBP1Q92547 1522 aa13.6□□□□□ -0.23
TTC28-201ENST00000397906 OLFM4Q6UX06 510 aa13.6□□□□□ -0.23
TTC28-201ENST00000397906 CDK13Q14004 1512 aaKnown RBP13.6□□□□□ -0.23
TTC28-201ENST00000397906 ZPR1O75312 459 aa13.6□□□□□ -0.23
TTC28-201ENST00000397906 CEBPAP49715 358 aaPredicted RBP13.6□□□□□ -0.23
TTC28-201ENST00000397906 PLEKHH2Q8IVE3 1493 aa13.6□□□□□ -0.23
TTC28-201ENST00000397906 BRPF1P55201 1214 aaPredicted RBP13.59□□□□□ -0.23
TTC28-201ENST00000397906 SLC52A1Q9NWF4 448 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 MPRIPQ6WCQ1 1025 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 ERC1Q8IUD2 1116 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 ZHX3Q9H4I2 956 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 TMOD3Q9NYL9 352 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 SUPT6HQ7KZ85 1726 aaKnown RBP13.59□□□□□ -0.23
TTC28-201ENST00000397906 NGLY1Q96IV0 654 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 RAI14Q9P0K7 980 aa13.59□□□□□ -0.23
TTC28-201ENST00000397906 SDF4Q9BRK5 362 aa13.58□□□□□ -0.23
TTC28-201ENST00000397906 CCDC69A6NI79 296 aa13.58□□□□□ -0.24
TTC28-201ENST00000397906 ANKIB1Q9P2G1 1089 aa13.58□□□□□ -0.24
TTC28-201ENST00000397906 NUDT16Q96DE0 195 aaKnown RBP13.58□□□□□ -0.24
TTC28-201ENST00000397906 SRCIN1Q9C0H9 1055 aa13.58□□□□□ -0.24
TTC28-201ENST00000397906 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms