RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 NBPF1Q3BBV0 1214 aa15.04■□□□□ -0
NEDD8-202ENST00000396828 NGDNQ8NEJ9 315 aaKnown RBP15.04■□□□□ -0
NEDD8-202ENST00000396828 NUDT16Q96DE0 195 aaKnown RBP15.04■□□□□ -0
NEDD8-202ENST00000396828 PAK3O75914 559 aaPredicted RBP15.03■□□□□ -0
NEDD8-202ENST00000396828 FAM98CQ17RN3 349 aaKnown RBP15.03■□□□□ -0
NEDD8-202ENST00000396828 STAC3Q96MF2 364 aa15.03■□□□□ -0
NEDD8-202ENST00000396828 CDK19Q9BWU1 502 aa15.03■□□□□ -0
NEDD8-202ENST00000396828 ZRANB1Q9UGI0 708 aa15.03■□□□□ -0
NEDD8-202ENST00000396828 EIF3AQ14152 1382 aaKnown RBP15.02■□□□□ -0
NEDD8-202ENST00000396828 KRT27Q7Z3Y8 459 aa15.02■□□□□ -0
NEDD8-202ENST00000396828 COL14A1Q05707 1796 aaKnown RBP15.02□□□□□ -0.01
NEDD8-202ENST00000396828 FAM182BQ5T319 152 aa15.01□□□□□ -0.01
NEDD8-202ENST00000396828 NUTM2GQ5VZR2 741 aa15.01□□□□□ -0.01
NEDD8-202ENST00000396828 ITSN1Q15811 1721 aa15□□□□□ -0.01
NEDD8-202ENST00000396828 CHRNA2Q15822 529 aa14.99□□□□□ -0.01
NEDD8-202ENST00000396828 TOPAZ1Q8N9V7 1692 aa14.99□□□□□ -0.01
NEDD8-202ENST00000396828 SPATA31A5Q5VU36 1347 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 SPATA31A7Q8IWB4 1347 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 KIAA1210Q9ULL0 1709 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 A0A0G2JS52 829 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 MYT1Q01538 1121 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 PHRF1Q9P1Y6 1649 aaKnown RBP14.98□□□□□ -0.01
NEDD8-202ENST00000396828 KIAA0232Q92628 1395 aa14.98□□□□□ -0.01
NEDD8-202ENST00000396828 ACEP12821 1306 aa14.97□□□□□ -0.01
NEDD8-202ENST00000396828 NBPF8Q3BBV2 869 aa14.97□□□□□ -0.01
NEDD8-202ENST00000396828 PRDM11Q9NQV5 511 aa14.97□□□□□ -0.01
NEDD8-202ENST00000396828 POLR3AO14802 1390 aaPredicted RBP14.97□□□□□ -0.01
NEDD8-202ENST00000396828 ZC3H6P61129 1189 aaKnown RBP14.96□□□□□ -0.01
NEDD8-202ENST00000396828 PLEKHG3A1L390 1219 aa14.95□□□□□ -0.02
NEDD8-202ENST00000396828 CCDC61Q9Y6R9 512 aa14.95□□□□□ -0.02
NEDD8-202ENST00000396828 THSD7AQ9UPZ6 1657 aa14.95□□□□□ -0.02
NEDD8-202ENST00000396828 SF3B2Q13435 895 aaKnown RBP14.94□□□□□ -0.02
NEDD8-202ENST00000396828 CABP2Q9NPB3 220 aa14.94□□□□□ -0.02
NEDD8-202ENST00000396828 STRN4Q9NRL3 753 aa14.93□□□□□ -0.02
NEDD8-202ENST00000396828 SPATA31A1Q5TZJ5 1347 aa14.92□□□□□ -0.02
NEDD8-202ENST00000396828 CAMTA1Q9Y6Y1 1673 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 NRKQ7Z2Y5 1582 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 PSDA5PKW4 1024 aaPredicted RBP14.91□□□□□ -0.02
NEDD8-202ENST00000396828 EN1Q05925 392 aaPredicted RBP14.91□□□□□ -0.02
NEDD8-202ENST00000396828 ABTB2Q8N961 1025 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 L3MBTL2Q969R5 705 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 SIN3AQ96ST3 1273 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 USP35Q9P2H5 1018 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 PPIP5K1Q6PFW1 1433 aa14.91□□□□□ -0.02
NEDD8-202ENST00000396828 CENPJQ9HC77 1338 aaPredicted RBP14.91□□□□□ -0.02
NEDD8-202ENST00000396828 SRPK2P78362 688 aaKnown RBP14.9□□□□□ -0.02
NEDD8-202ENST00000396828 QRICH2Q9H0J4 1663 aa14.9□□□□□ -0.02
NEDD8-202ENST00000396828 TNS1Q9HBL0 1735 aaKnown RBP14.89□□□□□ -0.03
NEDD8-202ENST00000396828 LARP1Q6PKG0 1096 aaKnown RBP14.89□□□□□ -0.03
NEDD8-202ENST00000396828 USP19O94966 1318 aa14.89□□□□□ -0.03
NEDD8-202ENST00000396828 LMO7Q8WWI1 1683 aa14.88□□□□□ -0.03
NEDD8-202ENST00000396828 BAG6P46379 1132 aa14.88□□□□□ -0.03
NEDD8-202ENST00000396828 CABP1Q9NZU7 370 aa14.88□□□□□ -0.03
NEDD8-202ENST00000396828 RGPD1P0DJD0 1748 aa14.88□□□□□ -0.03
NEDD8-202ENST00000396828 SSH2Q76I76 1423 aa14.87□□□□□ -0.03
NEDD8-202ENST00000396828 TRIM37O94972 964 aa14.86□□□□□ -0.03
NEDD8-202ENST00000396828 GCP02774 474 aa14.86□□□□□ -0.03
NEDD8-202ENST00000396828 EVA1CP58658 441 aa14.86□□□□□ -0.03
NEDD8-202ENST00000396828 EZH2Q15910 746 aaKnown RBP14.86□□□□□ -0.03
NEDD8-202ENST00000396828 CPDO75976 1380 aa14.85□□□□□ -0.03
NEDD8-202ENST00000396828 TRPM1Q7Z4N2 1603 aa14.85□□□□□ -0.03
NEDD8-202ENST00000396828 NEUROD1Q13562 356 aa14.84□□□□□ -0.03
NEDD8-202ENST00000396828 NLRP13Q86W25 1043 aa14.84□□□□□ -0.03
NEDD8-202ENST00000396828 USP6P35125 1406 aa14.83□□□□□ -0.03
NEDD8-202ENST00000396828 BARGINQ6ZT62 677 aa14.83□□□□□ -0.04
NEDD8-202ENST00000396828 CAMKK2Q96RR4 588 aa14.83□□□□□ -0.04
NEDD8-202ENST00000396828 DISP2A7MBM2 1401 aa14.83□□□□□ -0.04
NEDD8-202ENST00000396828 COL5A2P05997 1499 aaPredicted RBP14.82□□□□□ -0.04
NEDD8-202ENST00000396828 LRP5O75197 1615 aa14.82□□□□□ -0.04
NEDD8-202ENST00000396828 PIK3C2AO00443 1686 aa14.82□□□□□ -0.04
NEDD8-202ENST00000396828 ZBTB7CA1YPR0 619 aa14.82□□□□□ -0.04
NEDD8-202ENST00000396828 R3HDM1Q15032 1099 aaKnown RBP14.82□□□□□ -0.04
NEDD8-202ENST00000396828 FAM196AQ6ZSG2 479 aa14.82□□□□□ -0.04
NEDD8-202ENST00000396828 CCER1Q8TC90 406 aaPredicted RBP14.82□□□□□ -0.04
NEDD8-202ENST00000396828 NLRP6P59044 892 aa14.81□□□□□ -0.04
NEDD8-202ENST00000396828 TCP11L2Q8N4U5 519 aa14.81□□□□□ -0.04
NEDD8-202ENST00000396828 SLIT3O75094 1523 aa14.81□□□□□ -0.04
NEDD8-202ENST00000396828 APBA3O96018 575 aa14.8□□□□□ -0.04
NEDD8-202ENST00000396828 COL18A1P39060 1754 aa14.8□□□□□ -0.04
NEDD8-202ENST00000396828 PDE3BQ13370 1112 aa14.79□□□□□ -0.04
NEDD8-202ENST00000396828 AXIN2Q9Y2T1 843 aa14.79□□□□□ -0.04
NEDD8-202ENST00000396828 ROCK2O75116 1388 aaKnown RBP14.78□□□□□ -0.04
NEDD8-202ENST00000396828 EVC2Q86UK5 1308 aa14.78□□□□□ -0.04
NEDD8-202ENST00000396828 PARP4Q9UKK3 1724 aaKnown RBP14.78□□□□□ -0.04
NEDD8-202ENST00000396828 BRD4O60885 1362 aaPredicted RBP14.77□□□□□ -0.04
NEDD8-202ENST00000396828 AKAP12Q02952 1782 aa14.77□□□□□ -0.05
NEDD8-202ENST00000396828 CRB1P82279 1406 aa14.76□□□□□ -0.05
NEDD8-202ENST00000396828 AATKQ6ZMQ8 1374 aa14.76□□□□□ -0.05
NEDD8-202ENST00000396828 RGPD5Q99666 1765 aa14.76□□□□□ -0.05
NEDD8-202ENST00000396828 TTC21BQ7Z4L5 1316 aa14.76□□□□□ -0.05
NEDD8-202ENST00000396828 THRAP3Q9Y2W1 955 aaKnown RBP14.76□□□□□ -0.05
NEDD8-202ENST00000396828 RREB1Q92766 1687 aa14.76□□□□□ -0.05
NEDD8-202ENST00000396828 NUP188Q5SRE5 1749 aa14.75□□□□□ -0.05
NEDD8-202ENST00000396828 PEAK1Q9H792 1746 aa14.75□□□□□ -0.05
NEDD8-202ENST00000396828 SOX12O15370 315 aa14.75□□□□□ -0.05
NEDD8-202ENST00000396828 PTF1AQ7RTS3 328 aa14.75□□□□□ -0.05
NEDD8-202ENST00000396828 LRRC37A3O60309 1634 aa14.74□□□□□ -0.05
NEDD8-202ENST00000396828 ARHGEF25Q86VW2 580 aa14.74□□□□□ -0.05
NEDD8-202ENST00000396828 CPSF1Q10570 1443 aaKnown RBP14.74□□□□□ -0.05
NEDD8-202ENST00000396828 TOM1L2Q6ZVM7 507 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms