RNA–Protein interactions for RNA: ENST00000396581.5

TRIM40-207, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM40, Length 2,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-207ENST00000396581 FAM43AQ8N2R8 423 aa17.02■□□□□ 0.32
TRIM40-207ENST00000396581 PCDHB15Q9Y5E8 787 aa17.02■□□□□ 0.32
TRIM40-207ENST00000396581 EVC2Q86UK5 1308 aa17.01■□□□□ 0.31
TRIM40-207ENST00000396581 RLBP1P12271 317 aa17■□□□□ 0.31
TRIM40-207ENST00000396581 TCP11L2Q8N4U5 519 aa17■□□□□ 0.31
TRIM40-207ENST00000396581 ABCC11Q96J66 1382 aa17■□□□□ 0.31
TRIM40-207ENST00000396581 NRXN3Q9Y4C0 1643 aa17■□□□□ 0.31
TRIM40-207ENST00000396581 SETD1AO15047 1707 aaKnown RBP16.99■□□□□ 0.31
TRIM40-207ENST00000396581 ADGRB2O60241 1585 aa16.99■□□□□ 0.31
TRIM40-207ENST00000396581 MORC1Q86VD1 984 aa16.99■□□□□ 0.31
TRIM40-207ENST00000396581 PRAM1Q96QH2 718 aa16.99■□□□□ 0.31
TRIM40-207ENST00000396581 DLC1Q96QB1 1528 aa16.98■□□□□ 0.31
TRIM40-207ENST00000396581 LTKP29376 864 aa16.98■□□□□ 0.31
TRIM40-207ENST00000396581 PDZRN3Q9UPQ7 1066 aa16.98■□□□□ 0.31
TRIM40-207ENST00000396581 UPF2Q9HAU5 1272 aaKnown RBP16.97■□□□□ 0.31
TRIM40-207ENST00000396581 POGKQ9P215 609 aa16.97■□□□□ 0.31
TRIM40-207ENST00000396581 TULP4Q9NRJ4 1543 aa16.97■□□□□ 0.31
TRIM40-207ENST00000396581 METP08581 1390 aa16.97■□□□□ 0.31
TRIM40-207ENST00000396581 RWDD1Q9H446 243 aaPredicted RBP16.97■□□□□ 0.31
TRIM40-207ENST00000396581 ARHGAP23Q9P227 1491 aa16.96■□□□□ 0.31
TRIM40-207ENST00000396581 SAFB2Q14151 953 aaKnown RBP eCLIP16.96■□□□□ 0.31
TRIM40-207ENST00000396581 THEMISQ8N1K5 641 aaPredicted RBP16.96■□□□□ 0.31
TRIM40-207ENST00000396581 SLIT1O75093 1534 aa16.96■□□□□ 0.31
TRIM40-207ENST00000396581 PLEKHG1Q9ULL1 1385 aa16.96■□□□□ 0.3
TRIM40-207ENST00000396581 CT47B1P0C2W7 299 aaPredicted RBP16.95■□□□□ 0.3
TRIM40-207ENST00000396581 TBC1D2Q9BYX2 928 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 SLC12A5Q9H2X9 1139 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 NSD2O96028 1365 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 TXNDC2Q86VQ3 553 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 TNNQ9UQP3 1299 aa16.95■□□□□ 0.3
TRIM40-207ENST00000396581 MVPQ14764 893 aaKnown RBP16.94■□□□□ 0.3
TRIM40-207ENST00000396581 EID1Q9Y6B2 187 aa16.94■□□□□ 0.3
TRIM40-207ENST00000396581 ADAMTS13Q76LX8 1427 aa16.94■□□□□ 0.3
TRIM40-207ENST00000396581 PLPPR3Q6T4P5 718 aa16.93■□□□□ 0.3
TRIM40-207ENST00000396581 MYH16Q9H6N6 1097 aa16.93■□□□□ 0.3
TRIM40-207ENST00000396581 RRP7AQ9Y3A4 280 aaKnown RBP16.93■□□□□ 0.3
TRIM40-207ENST00000396581 L1TD1Q5T7N2 865 aaKnown RBP16.93■□□□□ 0.3
TRIM40-207ENST00000396581 TECPR2O15040 1411 aa16.93■□□□□ 0.3
TRIM40-207ENST00000396581 ADAMTSL3P82987 1691 aa16.93■□□□□ 0.3
TRIM40-207ENST00000396581 MTHFSP49914 203 aa16.92■□□□□ 0.3
TRIM40-207ENST00000396581 SLKQ9H2G2 1235 aaPredicted RBP16.92■□□□□ 0.3
TRIM40-207ENST00000396581 CABP2Q9NPB3 220 aa16.92■□□□□ 0.3
TRIM40-207ENST00000396581 MINK1Q8N4C8 1332 aaPredicted RBP16.92■□□□□ 0.3
TRIM40-207ENST00000396581 NEUROD2Q15784 382 aa16.92■□□□□ 0.3
TRIM40-207ENST00000396581 CFAP53Q96M91 514 aa16.92■□□□□ 0.3
TRIM40-207ENST00000396581 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.92■□□□□ 0.3
TRIM40-207ENST00000396581 MED14O60244 1454 aa16.91■□□□□ 0.3
TRIM40-207ENST00000396581 FAM135BQ49AJ0 1406 aa16.91■□□□□ 0.3
TRIM40-207ENST00000396581 ANKRD36BQ8N2N9 1353 aa16.91■□□□□ 0.3
TRIM40-207ENST00000396581 WAPLQ7Z5K2 1190 aa16.9■□□□□ 0.3
TRIM40-207ENST00000396581 ATAD2Q6PL18 1390 aa16.9■□□□□ 0.3
TRIM40-207ENST00000396581 RIMS1Q86UR5 1692 aaKnown RBP16.9■□□□□ 0.3
TRIM40-207ENST00000396581 SRPK2P78362 688 aaKnown RBP16.9■□□□□ 0.3
TRIM40-207ENST00000396581 ZKSCAN2Q63HK3 967 aa16.9■□□□□ 0.3
TRIM40-207ENST00000396581 RSPH6AQ9H0K4 717 aa16.9■□□□□ 0.3
TRIM40-207ENST00000396581 HDAC1Q13547 482 aaPredicted RBP16.89■□□□□ 0.29
TRIM40-207ENST00000396581 FSD2A1L4K1 749 aa16.88■□□□□ 0.29
TRIM40-207ENST00000396581 DZIP1LQ8IYY4 767 aaKnown RBP16.88■□□□□ 0.29
TRIM40-207ENST00000396581 CDK19Q9BWU1 502 aa16.88■□□□□ 0.29
TRIM40-207ENST00000396581 BCL2L13Q9BXK5 485 aa16.88■□□□□ 0.29
TRIM40-207ENST00000396581 TBX22Q9Y458 520 aa16.87■□□□□ 0.29
TRIM40-207ENST00000396581 CEP170BQ9Y4F5 1589 aaPredicted RBP16.87■□□□□ 0.29
TRIM40-207ENST00000396581 SETD1BQ9UPS6 1966 aaKnown RBP16.86■□□□□ 0.29
TRIM40-207ENST00000396581 TNNT2P45379 298 aaPredicted RBP16.86■□□□□ 0.29
TRIM40-207ENST00000396581 KNDC1Q76NI1 1749 aa16.86■□□□□ 0.29
TRIM40-207ENST00000396581 MCM4P33991 863 aa16.85■□□□□ 0.29
TRIM40-207ENST00000396581 CPS1P31327 1500 aa16.85■□□□□ 0.29
TRIM40-207ENST00000396581 PLEKHF1Q96S99 279 aa16.85■□□□□ 0.29
TRIM40-207ENST00000396581 COL3A1P02461 1466 aaPredicted RBP16.85■□□□□ 0.29
TRIM40-207ENST00000396581 SMC5Q8IY18 1101 aa16.84■□□□□ 0.29
TRIM40-207ENST00000396581 SLC26A8Q96RN1 970 aa16.84■□□□□ 0.29
TRIM40-207ENST00000396581 C22orf23Q9BZE7 217 aa16.84■□□□□ 0.29
TRIM40-207ENST00000396581 IL16Q14005 1332 aa16.84■□□□□ 0.29
TRIM40-207ENST00000396581 CHMP5Q9NZZ3 219 aa16.84■□□□□ 0.29
TRIM40-207ENST00000396581 NCOA3Q9Y6Q9 1424 aa16.83■□□□□ 0.29
TRIM40-207ENST00000396581 ROBO2Q9HCK4 1378 aa16.83■□□□□ 0.28
TRIM40-207ENST00000396581 DDX19BQ9UMR2 479 aa16.83■□□□□ 0.28
TRIM40-207ENST00000396581 WASLO00401 505 aaPredicted RBP16.82■□□□□ 0.28
TRIM40-207ENST00000396581 TRIM27P14373 513 aa16.82■□□□□ 0.28
TRIM40-207ENST00000396581 FTSJ3Q8IY81 847 aaKnown RBP16.82■□□□□ 0.28
TRIM40-207ENST00000396581 TERF2IPQ9NYB0 399 aa16.82■□□□□ 0.28
TRIM40-207ENST00000396581 A0A1W2PP64 1363 aa16.82■□□□□ 0.28
TRIM40-207ENST00000396581 U2AF1L5P0DN76 240 aaPredicted RBP16.82■□□□□ 0.28
TRIM40-207ENST00000396581 U2AF1Q01081 240 aaKnown RBP eCLIP16.82■□□□□ 0.28
TRIM40-207ENST00000396581 ZNF692Q9BU19 519 aaPredicted RBP16.81■□□□□ 0.28
TRIM40-207ENST00000396581 RRAGDQ9NQL2 400 aaPredicted RBP16.81■□□□□ 0.28
TRIM40-207ENST00000396581 PTPRUQ92729 1446 aa16.81■□□□□ 0.28
TRIM40-207ENST00000396581 DDIT3P35638 169 aa16.81■□□□□ 0.28
TRIM40-207ENST00000396581 ATF7IPQ6VMQ6 1270 aa16.81■□□□□ 0.28
TRIM40-207ENST00000396581 TRIM35Q9UPQ4 493 aa16.81■□□□□ 0.28
TRIM40-207ENST00000396581 CD163L1Q9NR16 1453 aa16.81■□□□□ 0.28
TRIM40-207ENST00000396581 XRCC6P12956 609 aaKnown RBP eCLIP16.8■□□□□ 0.28
TRIM40-207ENST00000396581 CABP1Q9NZU7 370 aa16.8■□□□□ 0.28
TRIM40-207ENST00000396581 DIP2AQ14689 1571 aa16.8■□□□□ 0.28
TRIM40-207ENST00000396581 ZNF142P52746 1687 aaPredicted RBP16.8■□□□□ 0.28
TRIM40-207ENST00000396581 GOLGA6L3A6NEY3 463 aa16.79■□□□□ 0.28
TRIM40-207ENST00000396581 TMPOP42166 694 aaKnown RBP16.79■□□□□ 0.28
TRIM40-207ENST00000396581 EXOSC9Q06265 439 aaKnown RBP16.79■□□□□ 0.28
TRIM40-207ENST00000396581 RBM25P49756 843 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms