RNA–Protein interactions for RNA: ENST00000396342.6

DDR1-229, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 675 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-229ENST00000396342 RGPD8O14715 1765 aaPredicted RBP23.48■■□□□ 1.35
DDR1-229ENST00000396342 NBPF8Q3BBV2 869 aa23.48■■□□□ 1.35
DDR1-229ENST00000396342 ABTB2Q8N961 1025 aa23.48■■□□□ 1.35
DDR1-229ENST00000396342 ACEP12821 1306 aa23.48■■□□□ 1.35
DDR1-229ENST00000396342 BAG6P46379 1132 aa23.46■■□□□ 1.35
DDR1-229ENST00000396342 GLI3P10071 1580 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 ATP7BP35670 1465 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 PLEKHG3A1L390 1219 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 NBPF1Q3BBV0 1214 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 NUTM2GQ5VZR2 741 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 STRN4Q9NRL3 753 aa23.45■■□□□ 1.34
DDR1-229ENST00000396342 ZC3H6P61129 1189 aaKnown RBP23.44■■□□□ 1.34
DDR1-229ENST00000396342 NLRP13Q86W25 1043 aa23.44■■□□□ 1.34
DDR1-229ENST00000396342 NWD2Q9ULI1 1742 aa23.44■■□□□ 1.34
DDR1-229ENST00000396342 NEUROD1Q13562 356 aa23.43■■□□□ 1.34
DDR1-229ENST00000396342 SPATA31A5Q5VU36 1347 aa23.42■■□□□ 1.34
DDR1-229ENST00000396342 SPATA31A7Q8IWB4 1347 aa23.42■■□□□ 1.34
DDR1-229ENST00000396342 POLR3AO14802 1390 aaPredicted RBP23.41■■□□□ 1.34
DDR1-229ENST00000396342 KIAA0232Q92628 1395 aa23.41■■□□□ 1.34
DDR1-229ENST00000396342 EVC2Q86UK5 1308 aa23.4■■□□□ 1.34
DDR1-229ENST00000396342 CHRNA2Q15822 529 aa23.4■■□□□ 1.34
DDR1-229ENST00000396342 L3MBTL2Q969R5 705 aa23.4■■□□□ 1.34
DDR1-229ENST00000396342 PLCH1Q4KWH8 1693 aa23.4■■□□□ 1.34
DDR1-229ENST00000396342 COL14A1Q05707 1796 aaKnown RBP23.4■■□□□ 1.34
DDR1-229ENST00000396342 BRD4O60885 1362 aaPredicted RBP23.4■■□□□ 1.34
DDR1-229ENST00000396342 ITSN1Q15811 1721 aa23.39■■□□□ 1.34
DDR1-229ENST00000396342 CABP2Q9NPB3 220 aa23.39■■□□□ 1.33
DDR1-229ENST00000396342 ARHGEF28Q8N1W1 1705 aaKnown RBP23.39■■□□□ 1.33
DDR1-229ENST00000396342 DEFB132Q7Z7B7 95 aa23.38■■□□□ 1.33
DDR1-229ENST00000396342 KIAA1210Q9ULL0 1709 aa23.38■■□□□ 1.33
DDR1-229ENST00000396342 TRPM3Q9HCF6 1732 aaPredicted RBP23.37■■□□□ 1.33
DDR1-229ENST00000396342 PPIP5K1Q6PFW1 1433 aa23.37■■□□□ 1.33
DDR1-229ENST00000396342 PDE3BQ13370 1112 aa23.36■■□□□ 1.33
DDR1-229ENST00000396342 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
DDR1-229ENST00000396342 ROCK2O75116 1388 aaKnown RBP23.36■■□□□ 1.33
DDR1-229ENST00000396342 ALS2Q96Q42 1657 aa23.35■■□□□ 1.33
DDR1-229ENST00000396342 ZBTB7CA1YPR0 619 aa23.35■■□□□ 1.33
DDR1-229ENST00000396342 SPATA31A1Q5TZJ5 1347 aa23.34■■□□□ 1.33
DDR1-229ENST00000396342 ABCA3Q99758 1704 aa23.34■■□□□ 1.33
DDR1-229ENST00000396342 FAM196AQ6ZSG2 479 aa23.34■■□□□ 1.33
DDR1-229ENST00000396342 CABP1Q9NZU7 370 aa23.34■■□□□ 1.33
DDR1-229ENST00000396342 NLRP6P59044 892 aa23.33■■□□□ 1.33
DDR1-229ENST00000396342 GCP02774 474 aa23.32■■□□□ 1.32
DDR1-229ENST00000396342 SIN3AQ96ST3 1273 aa23.32■■□□□ 1.32
DDR1-229ENST00000396342 ZNF692Q9BU19 519 aaPredicted RBP23.32■■□□□ 1.32
DDR1-229ENST00000396342 TCP11L2Q8N4U5 519 aa23.3■■□□□ 1.32
DDR1-229ENST00000396342 C11orf95C9JLR9 678 aaPredicted RBP23.29■■□□□ 1.32
DDR1-229ENST00000396342 THRAP3Q9Y2W1 955 aaKnown RBP23.29■■□□□ 1.32
DDR1-229ENST00000396342 CPDO75976 1380 aa23.28■■□□□ 1.32
DDR1-229ENST00000396342 BARGINQ6ZT62 677 aa23.28■■□□□ 1.32
DDR1-229ENST00000396342 USP19O94966 1318 aa23.28■■□□□ 1.32
DDR1-229ENST00000396342 FAM182BQ5T319 152 aa23.26■■□□□ 1.31
DDR1-229ENST00000396342 SSH2Q76I76 1423 aa23.25■■□□□ 1.31
DDR1-229ENST00000396342 EN1Q05925 392 aaPredicted RBP23.25■■□□□ 1.31
DDR1-229ENST00000396342 LARP1Q6PKG0 1096 aaKnown RBP23.25■■□□□ 1.31
DDR1-229ENST00000396342 KCNH5Q8NCM2 988 aa23.25■■□□□ 1.31
DDR1-229ENST00000396342 NRAPQ86VF7 1730 aa23.24■■□□□ 1.31
DDR1-229ENST00000396342 CARD11Q9BXL7 1154 aa23.23■■□□□ 1.31
DDR1-229ENST00000396342 USP6P35125 1406 aa23.23■■□□□ 1.31
DDR1-229ENST00000396342 TRIM37O94972 964 aa23.22■■□□□ 1.31
DDR1-229ENST00000396342 APBA3O96018 575 aa23.22■■□□□ 1.31
DDR1-229ENST00000396342 TONSLQ96HA7 1378 aa23.22■■□□□ 1.31
DDR1-229ENST00000396342 BRWD3Q6RI45 1802 aa23.22■■□□□ 1.31
DDR1-229ENST00000396342 TOM1L2Q6ZVM7 507 aa23.21■■□□□ 1.31
DDR1-229ENST00000396342 TOPAZ1Q8N9V7 1692 aa23.21■■□□□ 1.31
DDR1-229ENST00000396342 TTC21AQ8NDW8 1320 aa23.2■■□□□ 1.3
DDR1-229ENST00000396342 CSB-PGBD3P0DP91 1061 aa23.2■■□□□ 1.3
DDR1-229ENST00000396342 PSDA5PKW4 1024 aaPredicted RBP23.19■■□□□ 1.3
DDR1-229ENST00000396342 NBPF14Q5TI25 921 aa23.19■■□□□ 1.3
DDR1-229ENST00000396342 PHRF1Q9P1Y6 1649 aaKnown RBP23.19■■□□□ 1.3
DDR1-229ENST00000396342 AATKQ6ZMQ8 1374 aa23.17■■□□□ 1.3
DDR1-229ENST00000396342 QRICH2Q9H0J4 1663 aa23.17■■□□□ 1.3
DDR1-229ENST00000396342 HDGFL2Q7Z4V5 671 aaPredicted RBP23.17■■□□□ 1.3
DDR1-229ENST00000396342 PARD3Q8TEW0 1356 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 EP400Q96L91 3159 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 TTC21BQ7Z4L5 1316 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 SOX12O15370 315 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 SLC24A1O60721 1099 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 TMC1Q8TDI8 760 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 CDCA7Q9BWT1 371 aaPredicted RBP23.16■■□□□ 1.3
DDR1-229ENST00000396342 CRB1P82279 1406 aa23.16■■□□□ 1.3
DDR1-229ENST00000396342 KTN1Q86UP2 1357 aaKnown RBP23.15■■□□□ 1.3
DDR1-229ENST00000396342 NRKQ7Z2Y5 1582 aa23.15■■□□□ 1.3
DDR1-229ENST00000396342 CRYBG1Q9Y4K1 1723 aa23.14■■□□□ 1.3
DDR1-229ENST00000396342 R3HDM1Q15032 1099 aaKnown RBP23.14■■□□□ 1.29
DDR1-229ENST00000396342 EZH2Q15910 746 aaKnown RBP23.14■■□□□ 1.29
DDR1-229ENST00000396342 DDB1Q16531 1140 aa23.14■■□□□ 1.29
DDR1-229ENST00000396342 THSD7AQ9UPZ6 1657 aa23.13■■□□□ 1.29
DDR1-229ENST00000396342 CAMTA1Q9Y6Y1 1673 aa23.13■■□□□ 1.29
DDR1-229ENST00000396342 DISP2A7MBM2 1401 aa23.13■■□□□ 1.29
DDR1-229ENST00000396342 TERF2IPQ9NYB0 399 aa23.12■■□□□ 1.29
DDR1-229ENST00000396342 COL5A2P05997 1499 aaPredicted RBP23.11■■□□□ 1.29
DDR1-229ENST00000396342 RGPD1P0DJD0 1748 aa23.11■■□□□ 1.29
DDR1-229ENST00000396342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.1■■□□□ 1.29
DDR1-229ENST00000396342 CAMKK2Q96RR4 588 aa23.1■■□□□ 1.29
DDR1-229ENST00000396342 TRPM1Q7Z4N2 1603 aa23.1■■□□□ 1.29
DDR1-229ENST00000396342 WDR17Q8IZU2 1322 aa23.09■■□□□ 1.29
DDR1-229ENST00000396342 ARHGEF25Q86VW2 580 aa23.08■■□□□ 1.29
DDR1-229ENST00000396342 SBNO2Q9Y2G9 1366 aa23.08■■□□□ 1.29
DDR1-229ENST00000396342 OVOS2A0A0G2JMS6 1433 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms