RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 DCCP43146 1447 aa7.2□□□□□ -1.26
VPS41-203ENST00000395969 PTPRUQ92729 1446 aa7.2□□□□□ -1.26
VPS41-203ENST00000395969 CGNL1Q0VF96 1302 aa7.2□□□□□ -1.26
VPS41-203ENST00000395969 MED1Q15648 1581 aaPredicted RBP7.2□□□□□ -1.26
VPS41-203ENST00000395969 GGT6Q6P531 493 aa7.2□□□□□ -1.26
VPS41-203ENST00000395969 TRMT2AQ8IZ69 625 aaKnown RBP7.2□□□□□ -1.26
VPS41-203ENST00000395969 FAM208AQ9UK61 1670 aaKnown RBP7.19□□□□□ -1.26
VPS41-203ENST00000395969 IRX6P78412 446 aaPredicted RBP7.19□□□□□ -1.26
VPS41-203ENST00000395969 ALS2Q96Q42 1657 aa7.19□□□□□ -1.26
VPS41-203ENST00000395969 NCAPD2Q15021 1401 aa7.19□□□□□ -1.26
VPS41-203ENST00000395969 PPIP5K1Q6PFW1 1433 aa7.19□□□□□ -1.26
VPS41-203ENST00000395969 CCDC27Q2M243 656 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 OVOS2A0A0J9YW53 1432 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 OVOS2Q6IE36 1432 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 XIRP1Q702N8 1843 aaKnown RBP7.18□□□□□ -1.26
VPS41-203ENST00000395969 NOP58Q9Y2X3 529 aaKnown RBP7.18□□□□□ -1.26
VPS41-203ENST00000395969 METP08581 1390 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 SLIT3O75094 1523 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 CARD14Q9BXL6 1004 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 PANK3Q9H999 370 aa7.18□□□□□ -1.26
VPS41-203ENST00000395969 RGL3Q3MIN7 710 aa7.17□□□□□ -1.26
VPS41-203ENST00000395969 UBE2Q2Q8WVN8 375 aa7.17□□□□□ -1.26
VPS41-203ENST00000395969 MAP2P11137 1827 aaKnown RBP7.17□□□□□ -1.26
VPS41-203ENST00000395969 CFAP44Q96MT7 982 aa7.17□□□□□ -1.26
VPS41-203ENST00000395969 FOXD4L1Q9NU39 408 aa7.17□□□□□ -1.26
VPS41-203ENST00000395969 PPP4R2Q9NY27 417 aa7.17□□□□□ -1.26
VPS41-203ENST00000395969 NSD3Q9BZ95 1437 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 A0A1W2PP64 1363 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 PLEKHG3A1L390 1219 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 PEAK1Q9H792 1746 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 PPP2R1AP30153 589 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 STRCP1A6NGW2 1772 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 DMRT2Q9Y5R5 561 aa7.16□□□□□ -1.26
VPS41-203ENST00000395969 STRCQ7RTU9 1775 aa7.15□□□□□ -1.26
VPS41-203ENST00000395969 FBXO31Q5XUX0 539 aaPredicted RBP7.15□□□□□ -1.26
VPS41-203ENST00000395969 RNF216Q9NWF9 866 aaPredicted RBP7.15□□□□□ -1.26
VPS41-203ENST00000395969 RGPD8O14715 1765 aaPredicted RBP7.15□□□□□ -1.26
VPS41-203ENST00000395969 PAK3O75914 559 aaPredicted RBP7.14□□□□□ -1.27
VPS41-203ENST00000395969 CCDC184Q52MB2 194 aa7.14□□□□□ -1.27
VPS41-203ENST00000395969 PAXIP1Q6ZW49 1069 aaPredicted RBP7.14□□□□□ -1.27
VPS41-203ENST00000395969 ROBO2Q9HCK4 1378 aa7.14□□□□□ -1.27
VPS41-203ENST00000395969 ADGRL3Q9HAR2 1447 aa7.14□□□□□ -1.27
VPS41-203ENST00000395969 NFAT5O94916 1531 aa7.13□□□□□ -1.27
VPS41-203ENST00000395969 HIRIP3Q9BW71 556 aaPredicted RBP7.13□□□□□ -1.27
VPS41-203ENST00000395969 USP6P35125 1406 aa7.13□□□□□ -1.27
VPS41-203ENST00000395969 THEMISQ8N1K5 641 aaPredicted RBP7.13□□□□□ -1.27
VPS41-203ENST00000395969 PARP4Q9UKK3 1724 aaKnown RBP7.13□□□□□ -1.27
VPS41-203ENST00000395969 KNSTRNQ9Y448 316 aa7.12□□□□□ -1.27
VPS41-203ENST00000395969 DLG5Q8TDM6 1919 aa7.12□□□□□ -1.27
VPS41-203ENST00000395969 MRS2Q9HD23 443 aa7.12□□□□□ -1.27
VPS41-203ENST00000395969 NUDCQ9Y266 331 aa7.12□□□□□ -1.27
VPS41-203ENST00000395969 ZNF692Q9BU19 519 aaPredicted RBP7.12□□□□□ -1.27
VPS41-203ENST00000395969 IL16Q14005 1332 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 TTC21AQ8NDW8 1320 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 SIPA1L3O60292 1781 aaPredicted RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 COL18A1P39060 1754 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 RTL1A6NKG5 1358 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 WASLO00401 505 aaPredicted RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 PKNOX2Q96KN3 472 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 ATF5Q9Y2D1 282 aaPredicted RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 VIRMAQ69YN4 1812 aaKnown RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 ABCA3Q99758 1704 aa7.11□□□□□ -1.27
VPS41-203ENST00000395969 TRHP20396 242 aaPredicted RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 ZNF326Q5BKZ1 582 aaKnown RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 NPHP4O75161 1426 aaPredicted RBP7.11□□□□□ -1.27
VPS41-203ENST00000395969 LTN1O94822 1766 aa7.1□□□□□ -1.27
VPS41-203ENST00000395969 TERF2IPQ9NYB0 399 aa7.1□□□□□ -1.27
VPS41-203ENST00000395969 OVOS2A0A0G2JMS6 1433 aa7.1□□□□□ -1.27
VPS41-203ENST00000395969 NHSL1Q5SYE7 1610 aa7.1□□□□□ -1.27
VPS41-203ENST00000395969 IBTKQ9P2D0 1353 aaPredicted RBP7.1□□□□□ -1.27
VPS41-203ENST00000395969 PLEKHH1Q9ULM0 1364 aa7.1□□□□□ -1.27
VPS41-203ENST00000395969 CT47B1P0C2W7 299 aaPredicted RBP7.1□□□□□ -1.27
VPS41-203ENST00000395969 HNRNPUQ00839 825 aaKnown RBP eCLIP7.1□□□□□ -1.27
VPS41-203ENST00000395969 IPO9Q96P70 1041 aaKnown RBP7.1□□□□□ -1.27
VPS41-203ENST00000395969 COL22A1Q8NFW1 1626 aaPredicted RBP7.1□□□□□ -1.27
VPS41-203ENST00000395969 CACNA1FO60840 1977 aa7.09□□□□□ -1.27
VPS41-203ENST00000395969 AAMPQ13685 434 aa7.09□□□□□ -1.27
VPS41-203ENST00000395969 BRPF1P55201 1214 aaPredicted RBP7.09□□□□□ -1.27
VPS41-203ENST00000395969 ARID3AQ99856 593 aa7.09□□□□□ -1.27
VPS41-203ENST00000395969 LTKP29376 864 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 RTL5Q5HYW3 569 aaPredicted RBP7.08□□□□□ -1.28
VPS41-203ENST00000395969 PKD1L3Q7Z443 1732 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 PLEKHF1Q96S99 279 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 KDRP35968 1356 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 WDR63Q8IWG1 891 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 TMC1Q8TDI8 760 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 PRAM1Q96QH2 718 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 FBXO3Q9UK99 471 aa7.08□□□□□ -1.28
VPS41-203ENST00000395969 CICQ96RK0 1608 aaPredicted RBP7.07□□□□□ -1.28
VPS41-203ENST00000395969 B4GALNT3Q6L9W6 998 aa7.07□□□□□ -1.28
VPS41-203ENST00000395969 KDM3BQ7LBC6 1761 aa7.07□□□□□ -1.28
VPS41-203ENST00000395969 CDK19Q9BWU1 502 aa7.07□□□□□ -1.28
VPS41-203ENST00000395969 PLCH1Q4KWH8 1693 aa7.07□□□□□ -1.28
VPS41-203ENST00000395969 EID1Q9Y6B2 187 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 ARHGEF10O15013 1369 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 FYB1O15117 783 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 HOXD11P31277 338 aaPredicted RBP7.06□□□□□ -1.28
VPS41-203ENST00000395969 TRAK1Q9UPV9 953 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 CCDC61Q9Y6R9 512 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 PRR36Q9H6K5 1346 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms