RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 SBNO2Q9Y2G9 1366 aa33.47■■■□□ 2.95
SHMT1-204ENST00000395682 ALS2Q96Q42 1657 aa33.45■■■□□ 2.95
SHMT1-204ENST00000395682 MARF1Q9Y4F3 1742 aaKnown RBP33.43■■■□□ 2.94
SHMT1-204ENST00000395682 ST20-MTHFSA0A0A6YYL1 179 aa33.43■■■□□ 2.94
SHMT1-204ENST00000395682 RBM6P78332 1123 aaKnown RBP33.42■■■□□ 2.94
SHMT1-204ENST00000395682 TRPC5Q9UL62 973 aaPredicted RBP33.42■■■□□ 2.94
SHMT1-204ENST00000395682 NUTM2GQ5VZR2 741 aa33.41■■■□□ 2.94
SHMT1-204ENST00000395682 BCL9LQ86UU0 1499 aa33.39■■■□□ 2.94
SHMT1-204ENST00000395682 ATAD2Q6PL18 1390 aa33.39■■■□□ 2.94
SHMT1-204ENST00000395682 ABTB2Q8N961 1025 aa33.39■■■□□ 2.94
SHMT1-204ENST00000395682 FAM83GA6ND36 823 aa33.37■■■□□ 2.93
SHMT1-204ENST00000395682 UNC5CLQ8IV45 518 aa33.36■■■□□ 2.93
SHMT1-204ENST00000395682 TESK2Q96S53 571 aa33.36■■■□□ 2.93
SHMT1-204ENST00000395682 ZNF692Q9BU19 519 aaPredicted RBP33.35■■■□□ 2.93
SHMT1-204ENST00000395682 ABCA3Q99758 1704 aa33.35■■■□□ 2.93
SHMT1-204ENST00000395682 BRD4O60885 1362 aaPredicted RBP33.34■■■□□ 2.93
SHMT1-204ENST00000395682 SLIT2O94813 1529 aa33.34■■■□□ 2.93
SHMT1-204ENST00000395682 ATRNO75882 1429 aa33.33■■■□□ 2.93
SHMT1-204ENST00000395682 USP6P35125 1406 aa33.33■■■□□ 2.93
SHMT1-204ENST00000395682 SLC24A1O60721 1099 aa33.32■■■□□ 2.92
SHMT1-204ENST00000395682 USP47Q96K76 1375 aa33.32■■■□□ 2.92
SHMT1-204ENST00000395682 NLRP13Q86W25 1043 aa33.3■■■□□ 2.92
SHMT1-204ENST00000395682 TMC1Q8TDI8 760 aa33.3■■■□□ 2.92
SHMT1-204ENST00000395682 PUS7Q96PZ0 661 aaKnown RBP33.3■■■□□ 2.92
SHMT1-204ENST00000395682 CDK12Q9NYV4 1490 aaPredicted RBP33.3■■■□□ 2.92
SHMT1-204ENST00000395682 GJD4Q96KN9 370 aaPredicted RBP33.27■■■□□ 2.92
SHMT1-204ENST00000395682 SLC12A5Q9H2X9 1139 aa33.26■■■□□ 2.91
SHMT1-204ENST00000395682 PRDM11Q9NQV5 511 aa33.26■■■□□ 2.91
SHMT1-204ENST00000395682 SSH2Q76I76 1423 aa33.26■■■□□ 2.91
SHMT1-204ENST00000395682 NLRP6P59044 892 aa33.25■■■□□ 2.91
SHMT1-204ENST00000395682 ZC3H6P61129 1189 aaKnown RBP33.25■■■□□ 2.91
SHMT1-204ENST00000395682 BTG4Q9NY30 223 aa33.25■■■□□ 2.91
SHMT1-204ENST00000395682 CPSF1Q10570 1443 aaKnown RBP33.25■■■□□ 2.91
SHMT1-204ENST00000395682 CRYBG1Q9Y4K1 1723 aa33.25■■■□□ 2.91
SHMT1-204ENST00000395682 TTC21BQ7Z4L5 1316 aa33.24■■■□□ 2.91
SHMT1-204ENST00000395682 KTN1Q86UP2 1357 aaKnown RBP33.23■■■□□ 2.91
SHMT1-204ENST00000395682 USP19O94966 1318 aa33.23■■■□□ 2.91
SHMT1-204ENST00000395682 KIAA0232Q92628 1395 aa33.22■■■□□ 2.91
SHMT1-204ENST00000395682 VPS72Q15906 364 aa33.22■■■□□ 2.91
SHMT1-204ENST00000395682 RGS12O14924 1447 aa33.21■■■□□ 2.91
SHMT1-204ENST00000395682 TMF1P82094 1093 aa33.21■■■□□ 2.91
SHMT1-204ENST00000395682 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.21■■■□□ 2.91
SHMT1-204ENST00000395682 PLCH1Q4KWH8 1693 aa33.2■■■□□ 2.91
SHMT1-204ENST00000395682 GCP02774 474 aa33.2■■■□□ 2.91
SHMT1-204ENST00000395682 CHRNA2Q15822 529 aa33.2■■■□□ 2.91
SHMT1-204ENST00000395682 HDGFL2Q7Z4V5 671 aaPredicted RBP33.19■■■□□ 2.9
SHMT1-204ENST00000395682 CCDC9Q9Y3X0 531 aaKnown RBP33.19■■■□□ 2.9
SHMT1-204ENST00000395682 NWD2Q9ULI1 1742 aa33.19■■■□□ 2.9
SHMT1-204ENST00000395682 AKAP12Q02952 1782 aa33.19■■■□□ 2.9
SHMT1-204ENST00000395682 COL14A1Q05707 1796 aaKnown RBP33.19■■■□□ 2.9
SHMT1-204ENST00000395682 PHRF1Q9P1Y6 1649 aaKnown RBP33.18■■■□□ 2.9
SHMT1-204ENST00000395682 TERF2IPQ9NYB0 399 aa33.18■■■□□ 2.9
SHMT1-204ENST00000395682 TTC21AQ8NDW8 1320 aa33.18■■■□□ 2.9
SHMT1-204ENST00000395682 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.15■■■□□ 2.9
SHMT1-204ENST00000395682 CD163L1Q9NR16 1453 aa33.15■■■□□ 2.9
SHMT1-204ENST00000395682 CPDO75976 1380 aa33.11■■■□□ 2.89
SHMT1-204ENST00000395682 CDCA8Q53HL2 280 aa33.11■■■□□ 2.89
SHMT1-204ENST00000395682 NRKQ7Z2Y5 1582 aa33.11■■■□□ 2.89
SHMT1-204ENST00000395682 PIK3C2AO00443 1686 aa33.1■■■□□ 2.89
SHMT1-204ENST00000395682 NINLQ9Y2I6 1382 aa33.1■■■□□ 2.89
SHMT1-204ENST00000395682 GLI3P10071 1580 aa33.1■■■□□ 2.89
SHMT1-204ENST00000395682 A0A1W2PP64 1363 aa33.09■■■□□ 2.89
SHMT1-204ENST00000395682 MON2Q7Z3U7 1717 aa33.08■■■□□ 2.89
SHMT1-204ENST00000395682 ZBTB7CA1YPR0 619 aa33.07■■■□□ 2.88
SHMT1-204ENST00000395682 STRN4Q9NRL3 753 aa33.07■■■□□ 2.88
SHMT1-204ENST00000395682 ZRANB1Q9UGI0 708 aa33.07■■■□□ 2.88
SHMT1-204ENST00000395682 NRAPQ86VF7 1730 aa33.07■■■□□ 2.88
SHMT1-204ENST00000395682 EVA1CP58658 441 aa33.06■■■□□ 2.88
SHMT1-204ENST00000395682 NME9Q86XW9 330 aa33.06■■■□□ 2.88
SHMT1-204ENST00000395682 UPF1Q92900 1129 aaKnown RBP eCLIP33.06■■■□□ 2.88
SHMT1-204ENST00000395682 ONECUT3O60422 494 aaPredicted RBP33.05■■■□□ 2.88
SHMT1-204ENST00000395682 EIF4G2P78344 907 aaKnown RBP eCLIP33.05■■■□□ 2.88
SHMT1-204ENST00000395682 KCNH5Q8NCM2 988 aa33.05■■■□□ 2.88
SHMT1-204ENST00000395682 SLIT3O75094 1523 aa33.05■■■□□ 2.88
SHMT1-204ENST00000395682 SPATA31A5Q5VU36 1347 aa33.04■■■□□ 2.88
SHMT1-204ENST00000395682 SPATA31A7Q8IWB4 1347 aa33.04■■■□□ 2.88
SHMT1-204ENST00000395682 EDC4Q6P2E9 1401 aaKnown RBP33.04■■■□□ 2.88
SHMT1-204ENST00000395682 SOX12O15370 315 aa33.04■■■□□ 2.88
SHMT1-204ENST00000395682 SEPT12Q8IYM1 358 aa33.04■■■□□ 2.88
SHMT1-204ENST00000395682 USP31Q70CQ4 1352 aa33.01■■■□□ 2.88
SHMT1-204ENST00000395682 HSPA5P11021 654 aaKnown RBP33.01■■■□□ 2.87
SHMT1-204ENST00000395682 FAM98CQ17RN3 349 aaKnown RBP33.01■■■□□ 2.87
SHMT1-204ENST00000395682 CAMTA1Q9Y6Y1 1673 aa33.01■■■□□ 2.87
SHMT1-204ENST00000395682 ARHGEF25Q86VW2 580 aa32.98■■■□□ 2.87
SHMT1-204ENST00000395682 AATKQ6ZMQ8 1374 aa32.97■■■□□ 2.87
SHMT1-204ENST00000395682 ANKRD36BQ8N2N9 1353 aa32.97■■■□□ 2.87
SHMT1-204ENST00000395682 A0A0G2JS52 829 aa32.97■■■□□ 2.87
SHMT1-204ENST00000395682 MYT1Q01538 1121 aa32.97■■■□□ 2.87
SHMT1-204ENST00000395682 SPATA31A1Q5TZJ5 1347 aa32.97■■■□□ 2.87
SHMT1-204ENST00000395682 LARP1Q6PKG0 1096 aaKnown RBP32.96■■■□□ 2.87
SHMT1-204ENST00000395682 LMO7Q8WWI1 1683 aa32.94■■■□□ 2.86
SHMT1-204ENST00000395682 USP35Q9P2H5 1018 aa32.94■■■□□ 2.86
SHMT1-204ENST00000395682 AXIN2Q9Y2T1 843 aa32.92■■■□□ 2.86
SHMT1-204ENST00000395682 KRT27Q7Z3Y8 459 aa32.9■■■□□ 2.86
SHMT1-204ENST00000395682 POLR3GLQ9BT43 218 aa32.9■■■□□ 2.86
SHMT1-204ENST00000395682 NFAT5O94916 1531 aa32.89■■■□□ 2.86
SHMT1-204ENST00000395682 COL5A2P05997 1499 aaPredicted RBP32.89■■■□□ 2.86
SHMT1-204ENST00000395682 COG3Q96JB2 828 aa32.87■■■□□ 2.85
SHMT1-204ENST00000395682 BRWD3Q6RI45 1802 aa32.86■■■□□ 2.85
SHMT1-204ENST00000395682 USP54Q70EL1 1684 aa32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms