RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 FILIP1Q7Z7B0 1213 aa14.1□□□□□ -0.15
SYNPO-202ENST00000394243 HSP90AB4PQ58FF6 505 aa14.09□□□□□ -0.15
SYNPO-202ENST00000394243 WDR33Q9C0J8 1336 aaKnown RBP14.09□□□□□ -0.15
SYNPO-202ENST00000394243 SYCE3A1L190 88 aa14.09□□□□□ -0.15
SYNPO-202ENST00000394243 ZNHIT6Q9NWK9 470 aaKnown RBP14.09□□□□□ -0.15
SYNPO-202ENST00000394243 TEFQ10587 303 aa14.09□□□□□ -0.15
SYNPO-202ENST00000394243 STK38Q15208 465 aa14.09□□□□□ -0.15
SYNPO-202ENST00000394243 ATP2B1P20020 1258 aa14.09□□□□□ -0.15
SYNPO-202ENST00000394243 CCDC88BA6NC98 1476 aa14.08□□□□□ -0.15
SYNPO-202ENST00000394243 POLR3GO15318 223 aaPredicted RBP14.08□□□□□ -0.16
SYNPO-202ENST00000394243 HNRNPMP52272 730 aaKnown RBP eCLIP14.08□□□□□ -0.16
SYNPO-202ENST00000394243 PPP4R3BQ5MIZ7 849 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 COG3Q96JB2 828 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 BRMS1Q9HCU9 246 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 TICAM2Q86XR7 235 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 CCDC144AA2RUR9 1427 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 C1orf141Q5JVX7 400 aa14.08□□□□□ -0.16
SYNPO-202ENST00000394243 SEPT7Q16181 437 aaKnown RBP14.07□□□□□ -0.16
SYNPO-202ENST00000394243 LRRFIP2Q9Y608 721 aaKnown RBP14.07□□□□□ -0.16
SYNPO-202ENST00000394243 ANKRD62A6NC57 917 aa14.07□□□□□ -0.16
SYNPO-202ENST00000394243 SPDYE4A6NLX3 237 aa14.07□□□□□ -0.16
SYNPO-202ENST00000394243 ADAMTS8Q9UP79 889 aa14.07□□□□□ -0.16
SYNPO-202ENST00000394243 WASHC4Q2M389 1173 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 CIZ1Q9ULV3 898 aaPredicted RBP14.06□□□□□ -0.16
SYNPO-202ENST00000394243 SHTN1A0MZ66 631 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 KIF3BO15066 747 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 KRT85P78386 507 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 NOL10Q9BSC4 688 aaKnown RBP14.06□□□□□ -0.16
SYNPO-202ENST00000394243 XBP1P17861 261 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 GTF2F1P35269 517 aaKnown RBP eCLIP14.06□□□□□ -0.16
SYNPO-202ENST00000394243 PTPN14Q15678 1187 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 BBXQ8WY36 941 aaPredicted RBP14.06□□□□□ -0.16
SYNPO-202ENST00000394243 CCDC18Q5T9S5 1454 aa14.06□□□□□ -0.16
SYNPO-202ENST00000394243 ME1P48163 572 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 CCDC43Q96MW1 224 aaKnown RBP14.05□□□□□ -0.16
SYNPO-202ENST00000394243 C1orf115Q9H7X2 142 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 GNAI1P63096 354 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 CBFA2T2O43439 604 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 STK11IPQ8N1F8 1099 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 BRD4O60885 1362 aaPredicted RBP14.05□□□□□ -0.16
SYNPO-202ENST00000394243 FSD1Q9BTV5 496 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 NEUROD6Q96NK8 337 aa14.05□□□□□ -0.16
SYNPO-202ENST00000394243 EVC2Q86UK5 1308 aa14.04□□□□□ -0.16
SYNPO-202ENST00000394243 NUP62CLQ9H1M0 184 aa14.04□□□□□ -0.16
SYNPO-202ENST00000394243 DDX58O95786 925 aaKnown RBP14.04□□□□□ -0.16
SYNPO-202ENST00000394243 STK3Q13188 491 aa14.04□□□□□ -0.16
SYNPO-202ENST00000394243 CRACR2AQ9BSW2 395 aa14.04□□□□□ -0.16
SYNPO-202ENST00000394243 PIP4K2AP48426 406 aaPredicted RBP14.03□□□□□ -0.16
SYNPO-202ENST00000394243 IQCEQ6IPM2 695 aa14.03□□□□□ -0.16
SYNPO-202ENST00000394243 CLASRPQ8N2M8 674 aaKnown RBP14.03□□□□□ -0.16
SYNPO-202ENST00000394243 UBTFL1P0CB47 393 aaPredicted RBP14.03□□□□□ -0.16
SYNPO-202ENST00000394243 RSPH4AQ5TD94 716 aa14.03□□□□□ -0.16
SYNPO-202ENST00000394243 WASHC2AQ641Q2 1341 aa14.03□□□□□ -0.16
SYNPO-202ENST00000394243 TRHP20396 242 aaPredicted RBP14.03□□□□□ -0.16
SYNPO-202ENST00000394243 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.03□□□□□ -0.16
SYNPO-202ENST00000394243 BCAR3O75815 825 aa14.03□□□□□ -0.16
SYNPO-202ENST00000394243 TSPYL4Q9UJ04 414 aa14.03□□□□□ -0.16
SYNPO-202ENST00000394243 PDE3AQ14432 1141 aa14.02□□□□□ -0.16
SYNPO-202ENST00000394243 GCC1Q96CN9 775 aa14.02□□□□□ -0.16
SYNPO-202ENST00000394243 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.16
SYNPO-202ENST00000394243 KIF18AQ8NI77 898 aa14.02□□□□□ -0.16
SYNPO-202ENST00000394243 LARP1BQ659C4 914 aaKnown RBP14.02□□□□□ -0.16
SYNPO-202ENST00000394243 DACH1Q9UI36 760 aa14.02□□□□□ -0.17
SYNPO-202ENST00000394243 HMOX1P09601 288 aa14.02□□□□□ -0.17
SYNPO-202ENST00000394243 VPS37DQ86XT2 251 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 SPATA32Q96LK8 384 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 UPF3BQ9BZI7 483 aaKnown RBP14.01□□□□□ -0.17
SYNPO-202ENST00000394243 TNNT1P13805 278 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 DDX11Q96FC9 970 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 TIGD1Q96MW7 591 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 GBP3Q9H0R5 595 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 KRI1Q8N9T8 703 aaKnown RBP14.01□□□□□ -0.17
SYNPO-202ENST00000394243 LUC7LQ9NQ29 371 aaKnown RBP14.01□□□□□ -0.17
SYNPO-202ENST00000394243 CYP46A1Q9Y6A2 500 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 CEP57L1Q8IYX8 460 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 JMYQ8N9B5 988 aa14.01□□□□□ -0.17
SYNPO-202ENST00000394243 KIF2AO00139 706 aaPredicted RBP14□□□□□ -0.17
SYNPO-202ENST00000394243 SURF6O75683 361 aaKnown RBP14□□□□□ -0.17
SYNPO-202ENST00000394243 TXLNAP40222 546 aa14□□□□□ -0.17
SYNPO-202ENST00000394243 MEX3CQ5U5Q3 659 aaKnown RBP14□□□□□ -0.17
SYNPO-202ENST00000394243 DYNC1I1O14576 645 aa14□□□□□ -0.17
SYNPO-202ENST00000394243 TTC5Q8N0Z6 440 aa14□□□□□ -0.17
SYNPO-202ENST00000394243 GOLGA6L10A0A0M3HER8 536 aa14□□□□□ -0.17
SYNPO-202ENST00000394243 GTF2A1P52655 376 aaPredicted RBP14□□□□□ -0.17
SYNPO-202ENST00000394243 URI1O94763 535 aaPredicted RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 CAMK4Q16566 473 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 MAP3K11Q16584 847 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 RNF187Q5TA31 235 aaPredicted RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 FYB1O15117 783 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 SYCP1Q15431 976 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 MTMR7Q9Y216 660 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 EPB41L2O43491 1005 aaKnown RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 CASQ1P31415 396 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 ARHGAP29Q52LW3 1261 aa13.99□□□□□ -0.17
SYNPO-202ENST00000394243 ZFP91Q96JP5 570 aaPredicted RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 NOB1Q9ULX3 412 aaKnown RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 CTDP1Q9Y5B0 961 aaPredicted RBP13.99□□□□□ -0.17
SYNPO-202ENST00000394243 EFCAB2Q5VUJ9 269 aa13.98□□□□□ -0.17
SYNPO-202ENST00000394243 ANKRD18AQ8IVF6 992 aa13.98□□□□□ -0.17
SYNPO-202ENST00000394243 CCDC148Q8NFR7 591 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms