RNA–Protein interactions for RNA: ENST00000393357.6

PHTF1-205, Transcript of putative homeodomain transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHTF1, Length 3,244 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-205ENST00000393357 ZBTB40Q9NUA8 1239 aa20.25■□□□□ 0.83
PHTF1-205ENST00000393357 NUCB1Q02818 461 aa20.24■□□□□ 0.83
PHTF1-205ENST00000393357 C17orf53Q8N3J3 647 aaPredicted RBP20.24■□□□□ 0.83
PHTF1-205ENST00000393357 NSFL1CQ9UNZ2 370 aaKnown RBP20.24■□□□□ 0.83
PHTF1-205ENST00000393357 RSPH4AQ5TD94 716 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 RTEL1-TNFRSF6BF6WH68 1400 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 TSPYL6Q8N831 410 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 PODXL2Q9NZ53 605 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 CDC42BPAQ5VT25 1732 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.23■□□□□ 0.83
PHTF1-205ENST00000393357 NINLQ9Y2I6 1382 aa20.23■□□□□ 0.83
PHTF1-205ENST00000393357 TSHZ3Q63HK5 1081 aa20.22■□□□□ 0.83
PHTF1-205ENST00000393357 CROCC2H7BZ55 1655 aa20.22■□□□□ 0.83
PHTF1-205ENST00000393357 IGSF3O75054 1194 aa20.22■□□□□ 0.83
PHTF1-205ENST00000393357 HDAC1Q13547 482 aaPredicted RBP20.22■□□□□ 0.83
PHTF1-205ENST00000393357 OFD1O75665 1012 aa20.21■□□□□ 0.83
PHTF1-205ENST00000393357 RBM25P49756 843 aaKnown RBP20.21■□□□□ 0.83
PHTF1-205ENST00000393357 ABCC10Q5T3U5 1492 aa20.21■□□□□ 0.83
PHTF1-205ENST00000393357 IPO8O15397 1037 aaKnown RBP20.21■□□□□ 0.83
PHTF1-205ENST00000393357 TRIM35Q9UPQ4 493 aa20.21■□□□□ 0.83
PHTF1-205ENST00000393357 DCTN1Q14203 1278 aa20.19■□□□□ 0.82
PHTF1-205ENST00000393357 KLHL40Q2TBA0 621 aa20.18■□□□□ 0.82
PHTF1-205ENST00000393357 EFCAB2Q5VUJ9 269 aa20.18■□□□□ 0.82
PHTF1-205ENST00000393357 LARP6Q9BRS8 491 aaKnown RBP20.17■□□□□ 0.82
PHTF1-205ENST00000393357 MINK1Q8N4C8 1332 aaPredicted RBP20.17■□□□□ 0.82
PHTF1-205ENST00000393357 POLR3AO14802 1390 aaPredicted RBP20.17■□□□□ 0.82
PHTF1-205ENST00000393357 SNX21Q969T3 373 aa20.17■□□□□ 0.82
PHTF1-205ENST00000393357 DDIT3P35638 169 aa20.17■□□□□ 0.82
PHTF1-205ENST00000393357 SHANK2Q9UPX8 1470 aa20.16■□□□□ 0.82
PHTF1-205ENST00000393357 CBX1P83916 185 aa20.16■□□□□ 0.82
PHTF1-205ENST00000393357 NGEFQ8N5V2 710 aa20.16■□□□□ 0.82
PHTF1-205ENST00000393357 PRKAR2BP31323 418 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 KIF16BQ96L93 1317 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 SOX12O15370 315 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 CIZ1Q9ULV3 898 aaPredicted RBP20.15■□□□□ 0.82
PHTF1-205ENST00000393357 SLC24A1O60721 1099 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 BMP2KLQ5H9B9 411 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 GPT2Q8TD30 523 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 ABCC2Q92887 1545 aa20.15■□□□□ 0.82
PHTF1-205ENST00000393357 TMEM63CQ9P1W3 806 aa20.14■□□□□ 0.82
PHTF1-205ENST00000393357 GSPT1P15170 499 aaKnown RBP20.14■□□□□ 0.81
PHTF1-205ENST00000393357 CDC45O75419 566 aa20.14■□□□□ 0.81
PHTF1-205ENST00000393357 UGGT1Q9NYU2 1555 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 FAM83GA6ND36 823 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 LMBRD1Q9NUN5 540 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 ERVK-7P63135 1459 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 SAMD9LQ8IVG5 1584 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 KRT24Q2M2I5 525 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 SIRT2Q8IXJ6 389 aa20.13■□□□□ 0.81
PHTF1-205ENST00000393357 AAMPQ13685 434 aa20.12■□□□□ 0.81
PHTF1-205ENST00000393357 PPP1R9BQ96SB3 815 aa20.12■□□□□ 0.81
PHTF1-205ENST00000393357 ISY1Q9ULR0 285 aaKnown RBP20.12■□□□□ 0.81
PHTF1-205ENST00000393357 SPDYE4A6NLX3 237 aa20.11■□□□□ 0.81
PHTF1-205ENST00000393357 NEK4P51957 841 aa20.11■□□□□ 0.81
PHTF1-205ENST00000393357 SYNMO15061 1565 aa20.11■□□□□ 0.81
PHTF1-205ENST00000393357 SLC4A10Q6U841 1118 aa20.1■□□□□ 0.81
PHTF1-205ENST00000393357 PHACTR3Q96KR7 559 aa20.1■□□□□ 0.81
PHTF1-205ENST00000393357 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.1■□□□□ 0.81
PHTF1-205ENST00000393357 TRAPPC8Q9Y2L5 1435 aa20.1■□□□□ 0.81
PHTF1-205ENST00000393357 TTC12Q9H892 705 aaPredicted RBP20.1■□□□□ 0.81
PHTF1-205ENST00000393357 CHMP3Q9Y3E7 222 aa20.1■□□□□ 0.81
PHTF1-205ENST00000393357 DIAPH1O60610 1272 aaKnown RBP20.09■□□□□ 0.81
PHTF1-205ENST00000393357 ZBTB7BO15156 539 aaPredicted RBP20.09■□□□□ 0.81
PHTF1-205ENST00000393357 PHF23Q9BUL5 403 aaPredicted RBP20.09■□□□□ 0.81
PHTF1-205ENST00000393357 UPF3BQ9BZI7 483 aaKnown RBP20.09■□□□□ 0.81
PHTF1-205ENST00000393357 MYO5CQ9NQX4 1742 aa20.08■□□□□ 0.81
PHTF1-205ENST00000393357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.08■□□□□ 0.8
PHTF1-205ENST00000393357 NUCB2P80303 420 aa20.06■□□□□ 0.8
PHTF1-205ENST00000393357 USP25Q9UHP3 1055 aa20.06■□□□□ 0.8
PHTF1-205ENST00000393357 NOL7Q9UMY1 257 aaKnown RBP20.06■□□□□ 0.8
PHTF1-205ENST00000393357 ZKSCAN5Q9Y2L8 839 aa20.06■□□□□ 0.8
PHTF1-205ENST00000393357 NPC1L1Q9UHC9 1359 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 ST18O60284 1047 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 PPIP5K1Q6PFW1 1433 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 NECTIN2Q92692 538 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 RILPL2Q969X0 211 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 EIF2AK4Q9P2K8 1649 aaKnown RBP20.05■□□□□ 0.8
PHTF1-205ENST00000393357 NOS1P29475 1434 aa20.05■□□□□ 0.8
PHTF1-205ENST00000393357 PLEKHM2Q8IWE5 1019 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 MAPK8IP2Q13387 824 aaPredicted RBP20.04■□□□□ 0.8
PHTF1-205ENST00000393357 CCDC27Q2M243 656 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 PTPRTO14522 1441 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 SDSP20132 328 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 RABEP1Q15276 862 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 C8orf58Q8NAV2 365 aa20.04■□□□□ 0.8
PHTF1-205ENST00000393357 KANK1Q14678 1352 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 SPC24Q8NBT2 197 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 CFAP65Q6ZU64 1925 aaKnown RBP20.03■□□□□ 0.8
PHTF1-205ENST00000393357 TRIM6-TRIM34B2RNG4 842 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 TWISTNBQ3B726 338 aaPredicted RBP20.03■□□□□ 0.8
PHTF1-205ENST00000393357 MIS18AQ9NYP9 233 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 ZDHHC9Q9Y397 364 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.03■□□□□ 0.8
PHTF1-205ENST00000393357 CLASP1Q7Z460 1538 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 ARHGEF5Q12774 1597 aa20.03■□□□□ 0.8
PHTF1-205ENST00000393357 CD109Q6YHK3 1445 aa20.02■□□□□ 0.8
PHTF1-205ENST00000393357 VIRMAQ69YN4 1812 aaKnown RBP20.02■□□□□ 0.8
PHTF1-205ENST00000393357 GADD45BO75293 160 aaPredicted RBP20.02■□□□□ 0.8
PHTF1-205ENST00000393357 PRDM4Q9UKN5 801 aa20.02■□□□□ 0.8
PHTF1-205ENST00000393357 GCC1Q96CN9 775 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms