RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 CABP1Q9NZU7 370 aa22.54■■□□□ 1.2
SQSTM1-202ENST00000389805 PHF23Q9BUL5 403 aaPredicted RBP22.54■■□□□ 1.2
SQSTM1-202ENST00000389805 XRCC6P12956 609 aaKnown RBP eCLIP22.53■■□□□ 1.21e-5■■■□□ 14.9
SQSTM1-202ENST00000389805 RARSP54136 660 aaKnown RBP22.52■■□□□ 1.2
SQSTM1-202ENST00000389805 PNNQ9H307 717 aaKnown RBP22.52■■□□□ 1.2
SQSTM1-202ENST00000389805 ABCC11Q96J66 1382 aa22.52■■□□□ 1.2
SQSTM1-202ENST00000389805 IQSEC2Q5JU85 1478 aa22.51■■□□□ 1.19
SQSTM1-202ENST00000389805 TERF2IPQ9NYB0 399 aa22.5■■□□□ 1.19
SQSTM1-202ENST00000389805 USP32Q8NFA0 1604 aa22.5■■□□□ 1.19
SQSTM1-202ENST00000389805 GLIPR1L2Q4G1C9 344 aa22.5■■□□□ 1.19
SQSTM1-202ENST00000389805 NSD2O96028 1365 aa22.5■■□□□ 1.19
SQSTM1-202ENST00000389805 WDR63Q8IWG1 891 aa22.49■■□□□ 1.19
SQSTM1-202ENST00000389805 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.49■■□□□ 1.19
SQSTM1-202ENST00000389805 CLUAP1Q96AJ1 413 aa22.49■■□□□ 1.19
SQSTM1-202ENST00000389805 GOLGA6L3A6NEY3 463 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 RLBP1P12271 317 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 RIMBP3CA6NJZ7 1639 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 RIMBP3BA6NNM3 1639 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 RIMBP3Q9UFD9 1639 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 PDE3AQ14432 1141 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 TSR2Q969E8 191 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 ZMYND15Q9H091 742 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 ALKQ9UM73 1620 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 CD163L1Q9NR16 1453 aa22.48■■□□□ 1.19
SQSTM1-202ENST00000389805 ATAD2Q6PL18 1390 aa22.47■■□□□ 1.19
SQSTM1-202ENST00000389805 DIP2BQ9P265 1576 aa22.47■■□□□ 1.19
SQSTM1-202ENST00000389805 ANTXR1Q9H6X2 564 aa22.47■■□□□ 1.19
SQSTM1-202ENST00000389805 HSP90AA2PQ14568 343 aaPredicted RBP22.46■■□□□ 1.19
SQSTM1-202ENST00000389805 CCDC27Q2M243 656 aa22.45■■□□□ 1.18
SQSTM1-202ENST00000389805 PLEKHF1Q96S99 279 aa22.45■■□□□ 1.18
SQSTM1-202ENST00000389805 HDGFL2Q7Z4V5 671 aaPredicted RBP22.44■■□□□ 1.18
SQSTM1-202ENST00000389805 TBC1D2Q9BYX2 928 aa22.44■■□□□ 1.18
SQSTM1-202ENST00000389805 HSP90AA1P07900 732 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-202ENST00000389805 NINLQ9Y2I6 1382 aa22.43■■□□□ 1.18
SQSTM1-202ENST00000389805 TMPOP42166 694 aaKnown RBP22.42■■□□□ 1.18
SQSTM1-202ENST00000389805 A2ML1A8K2U0 1454 aa22.41■■□□□ 1.18
SQSTM1-202ENST00000389805 TRIM35Q9UPQ4 493 aa22.41■■□□□ 1.18
SQSTM1-202ENST00000389805 CLTCQ00610 1675 aaKnown RBP22.41■■□□□ 1.18
SQSTM1-202ENST00000389805 MYH16Q9H6N6 1097 aa22.41■■□□□ 1.18
SQSTM1-202ENST00000389805 ARHGEF40Q8TER5 1519 aa22.41■■□□□ 1.18
SQSTM1-202ENST00000389805 NLRP1Q9C000 1473 aa22.4■■□□□ 1.18
SQSTM1-202ENST00000389805 NCKAP5LQ9HCH0 1330 aa22.4■■□□□ 1.18
SQSTM1-202ENST00000389805 RIMS2Q9UQ26 1411 aa22.4■■□□□ 1.18
SQSTM1-202ENST00000389805 TXNDC2Q86VQ3 553 aa22.39■■□□□ 1.18
SQSTM1-202ENST00000389805 PCDHB15Q9Y5E8 787 aa22.39■■□□□ 1.18
SQSTM1-202ENST00000389805 UPF2Q9HAU5 1272 aaKnown RBP22.39■■□□□ 1.17
SQSTM1-202ENST00000389805 DIAPH1O60610 1272 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-202ENST00000389805 CLCN1P35523 988 aa22.38■■□□□ 1.17
SQSTM1-202ENST00000389805 EXOSC9Q06265 439 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-202ENST00000389805 MAPK8IP3Q9UPT6 1336 aa22.38■■□□□ 1.17
SQSTM1-202ENST00000389805 MCM4P33991 863 aa22.38■■□□□ 1.17
SQSTM1-202ENST00000389805 RIPK4P57078 832 aa22.37■■□□□ 1.17
SQSTM1-202ENST00000389805 ZRANB1Q9UGI0 708 aa22.37■■□□□ 1.17
SQSTM1-202ENST00000389805 COL3A1P02461 1466 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-202ENST00000389805 PPP6R1Q9UPN7 881 aa22.36■■□□□ 1.17
SQSTM1-202ENST00000389805 FSD2A1L4K1 749 aa22.35■■□□□ 1.17
SQSTM1-202ENST00000389805 ESF1Q9H501 851 aaKnown RBP22.35■■□□□ 1.17
SQSTM1-202ENST00000389805 METP08581 1390 aa22.35■■□□□ 1.17
SQSTM1-202ENST00000389805 TBC1D32Q96NH3 1257 aa22.34■■□□□ 1.17
SQSTM1-202ENST00000389805 POLKQ9UBT6 870 aa22.34■■□□□ 1.17
SQSTM1-202ENST00000389805 TRAK2O60296 914 aa22.33■■□□□ 1.16
SQSTM1-202ENST00000389805 AGLP35573 1532 aa22.33■■□□□ 1.16
SQSTM1-202ENST00000389805 ZMYM3Q14202 1370 aa22.32■■□□□ 1.16
SQSTM1-202ENST00000389805 HMOX1P09601 288 aa22.32■■□□□ 1.16
SQSTM1-202ENST00000389805 NME9Q86XW9 330 aa22.32■■□□□ 1.16
SQSTM1-202ENST00000389805 SMC4Q9NTJ3 1288 aa22.32■■□□□ 1.16
SQSTM1-202ENST00000389805 EMILIN1Q9Y6C2 1016 aa22.31■■□□□ 1.16
SQSTM1-202ENST00000389805 ADGRB2O60241 1585 aa22.31■■□□□ 1.16
SQSTM1-202ENST00000389805 SSH1Q8WYL5 1049 aa22.31■■□□□ 1.16
SQSTM1-202ENST00000389805 WASLO00401 505 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-202ENST00000389805 RRP9O43818 475 aaKnown RBP22.3■■□□□ 1.16
SQSTM1-202ENST00000389805 PRKAR2BP31323 418 aa22.3■■□□□ 1.16
SQSTM1-202ENST00000389805 SPATA31D1Q6ZQQ2 1576 aa22.3■■□□□ 1.16
SQSTM1-202ENST00000389805 PNPLA6Q8IY17 1366 aa22.29■■□□□ 1.16
SQSTM1-202ENST00000389805 PDZRN3Q9UPQ7 1066 aa22.29■■□□□ 1.16
SQSTM1-202ENST00000389805 ZKSCAN2Q63HK3 967 aa22.29■■□□□ 1.16
SQSTM1-202ENST00000389805 PHACTR3Q96KR7 559 aa22.29■■□□□ 1.16
SQSTM1-202ENST00000389805 NCBP3Q53F19 620 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-202ENST00000389805 FTSJ3Q8IY81 847 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-202ENST00000389805 MED14O60244 1454 aa22.28■■□□□ 1.16
SQSTM1-202ENST00000389805 ERBB4Q15303 1308 aa22.28■■□□□ 1.16
SQSTM1-202ENST00000389805 THUMPD2Q9BTF0 503 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-202ENST00000389805 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-202ENST00000389805 VIRMAQ69YN4 1812 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-202ENST00000389805 REREQ9P2R6 1566 aa22.27■■□□□ 1.16
SQSTM1-202ENST00000389805 TRIM27P14373 513 aa22.26■■□□□ 1.15
SQSTM1-202ENST00000389805 MVPQ14764 893 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-202ENST00000389805 NUDT16Q96DE0 195 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-202ENST00000389805 NUTM2FA1L443 756 aa22.26■■□□□ 1.15
SQSTM1-202ENST00000389805 MFAP1P55081 439 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-202ENST00000389805 ESPNB1AK53 854 aa22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 MRE11P49959 708 aa22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 PPIP5K1Q6PFW1 1433 aa22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 FCHSD2O94868 740 aa22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 RRS1Q15050 365 aaKnown RBP22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 GRPEL1Q9HAV7 217 aa22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 NOB1Q9ULX3 412 aaKnown RBP22.25■■□□□ 1.15
SQSTM1-202ENST00000389805 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
SQSTM1-202ENST00000389805 PMFBP1Q8TBY8 1022 aa22.24■■□□□ 1.15
SQSTM1-202ENST00000389805 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms