RNA–Protein interactions for RNA: ENST00000377808.8

SMARCE1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-203ENST00000377808 ALS2Q96Q42 1657 aa16.41■□□□□ 0.22
SMARCE1-203ENST00000377808 PLEKHG3A1L390 1219 aa16.41■□□□□ 0.22
SMARCE1-203ENST00000377808 POLR3AO14802 1390 aaPredicted RBP16.4■□□□□ 0.22
SMARCE1-203ENST00000377808 CABP1Q9NZU7 370 aa16.4■□□□□ 0.22
SMARCE1-203ENST00000377808 RGS12O14924 1447 aa16.39■□□□□ 0.21
SMARCE1-203ENST00000377808 ATRNO75882 1429 aa16.39■□□□□ 0.21
SMARCE1-203ENST00000377808 UNC5CLQ8IV45 518 aa16.39■□□□□ 0.21
SMARCE1-203ENST00000377808 BCL9LQ86UU0 1499 aa16.39■□□□□ 0.21
SMARCE1-203ENST00000377808 CDK12Q9NYV4 1490 aaPredicted RBP16.39■□□□□ 0.21
SMARCE1-203ENST00000377808 ABTB2Q8N961 1025 aa16.38■□□□□ 0.21
SMARCE1-203ENST00000377808 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
SMARCE1-203ENST00000377808 SLIT2O94813 1529 aa16.37■□□□□ 0.21
SMARCE1-203ENST00000377808 CCER1Q8TC90 406 aaPredicted RBP16.36■□□□□ 0.21
SMARCE1-203ENST00000377808 PLCH1Q4KWH8 1693 aa16.36■□□□□ 0.21
SMARCE1-203ENST00000377808 FAM83GA6ND36 823 aa16.35■□□□□ 0.21
SMARCE1-203ENST00000377808 GJD4Q96KN9 370 aaPredicted RBP16.35■□□□□ 0.21
SMARCE1-203ENST00000377808 ATAD2Q6PL18 1390 aa16.35■□□□□ 0.21
SMARCE1-203ENST00000377808 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.34■□□□□ 0.21
SMARCE1-203ENST00000377808 PRDM11Q9NQV5 511 aa16.34■□□□□ 0.21
SMARCE1-203ENST00000377808 BTG4Q9NY30 223 aa16.34■□□□□ 0.21
SMARCE1-203ENST00000377808 ZC3H6P61129 1189 aaKnown RBP16.33■□□□□ 0.2
SMARCE1-203ENST00000377808 TMC1Q8TDI8 760 aa16.33■□□□□ 0.2
SMARCE1-203ENST00000377808 USP6P35125 1406 aa16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 PHRF1Q9P1Y6 1649 aaKnown RBP16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 SBNO2Q9Y2G9 1366 aa16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 NWD2Q9ULI1 1742 aa16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 CRYBG1Q9Y4K1 1723 aa16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 CLSPNQ9HAW4 1339 aa16.32■□□□□ 0.2
SMARCE1-203ENST00000377808 COL14A1Q05707 1796 aaKnown RBP16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 KIAA0232Q92628 1395 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 ST20-MTHFSA0A0A6YYL1 179 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 A0A0G2JS52 829 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 ZBTB7CA1YPR0 619 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 MYT1Q01538 1121 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 CHRNA2Q15822 529 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 NLRP13Q86W25 1043 aa16.31■□□□□ 0.2
SMARCE1-203ENST00000377808 VPS72Q15906 364 aa16.3■□□□□ 0.2
SMARCE1-203ENST00000377808 NLRP6P59044 892 aa16.29■□□□□ 0.2
SMARCE1-203ENST00000377808 UPF1Q92900 1129 aaKnown RBP eCLIP16.29■□□□□ 0.2
SMARCE1-203ENST00000377808 GLI3P10071 1580 aa16.29■□□□□ 0.2
SMARCE1-203ENST00000377808 BRD4O60885 1362 aaPredicted RBP16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 USP47Q96K76 1375 aa16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 ZNF692Q9BU19 519 aaPredicted RBP16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 STRN4Q9NRL3 753 aa16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 NRKQ7Z2Y5 1582 aa16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 KTN1Q86UP2 1357 aaKnown RBP16.28■□□□□ 0.2
SMARCE1-203ENST00000377808 NRAPQ86VF7 1730 aa16.27■□□□□ 0.2
SMARCE1-203ENST00000377808 TIMELESSQ9UNS1 1208 aa16.27■□□□□ 0.2
SMARCE1-203ENST00000377808 SOX12O15370 315 aa16.26■□□□□ 0.19
SMARCE1-203ENST00000377808 USP19O94966 1318 aa16.26■□□□□ 0.19
SMARCE1-203ENST00000377808 TTC21BQ7Z4L5 1316 aa16.26■□□□□ 0.19
SMARCE1-203ENST00000377808 AKAP12Q02952 1782 aa16.26■□□□□ 0.19
SMARCE1-203ENST00000377808 GCP02774 474 aa16.25■□□□□ 0.19
SMARCE1-203ENST00000377808 HDGFL2Q7Z4V5 671 aaPredicted RBP16.25■□□□□ 0.19
SMARCE1-203ENST00000377808 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.25■□□□□ 0.19
SMARCE1-203ENST00000377808 PIK3C2AO00443 1686 aa16.25■□□□□ 0.19
SMARCE1-203ENST00000377808 EVA1CP58658 441 aa16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 FAM98CQ17RN3 349 aaKnown RBP16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 SEPT12Q8IYM1 358 aa16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 TESK2Q96S53 571 aa16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 SLC12A5Q9H2X9 1139 aa16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 CPSF1Q10570 1443 aaKnown RBP16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 SSH2Q76I76 1423 aa16.24■□□□□ 0.19
SMARCE1-203ENST00000377808 TTC21AQ8NDW8 1320 aa16.23■□□□□ 0.19
SMARCE1-203ENST00000377808 SLC24A1O60721 1099 aa16.22■□□□□ 0.19
SMARCE1-203ENST00000377808 TMF1P82094 1093 aa16.22■□□□□ 0.19
SMARCE1-203ENST00000377808 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
SMARCE1-203ENST00000377808 TERF2IPQ9NYB0 399 aa16.21■□□□□ 0.19
SMARCE1-203ENST00000377808 CPDO75976 1380 aa16.21■□□□□ 0.19
SMARCE1-203ENST00000377808 MON2Q7Z3U7 1717 aa16.21■□□□□ 0.19
SMARCE1-203ENST00000377808 SPATA31A5Q5VU36 1347 aa16.2■□□□□ 0.18
SMARCE1-203ENST00000377808 SPATA31A7Q8IWB4 1347 aa16.2■□□□□ 0.18
SMARCE1-203ENST00000377808 SLIT3O75094 1523 aa16.2■□□□□ 0.18
SMARCE1-203ENST00000377808 A0A1W2PP64 1363 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 CD163L1Q9NR16 1453 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 KRT27Q7Z3Y8 459 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 NME9Q86XW9 330 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 KCNH5Q8NCM2 988 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 PUS7Q96PZ0 661 aaKnown RBP16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 ZRANB1Q9UGI0 708 aa16.19■□□□□ 0.18
SMARCE1-203ENST00000377808 BRWD3Q6RI45 1802 aa16.18■□□□□ 0.18
SMARCE1-203ENST00000377808 CAMTA1Q9Y6Y1 1673 aa16.18■□□□□ 0.18
SMARCE1-203ENST00000377808 NINLQ9Y2I6 1382 aa16.18■□□□□ 0.18
SMARCE1-203ENST00000377808 SPATA31A1Q5TZJ5 1347 aa16.18■□□□□ 0.18
SMARCE1-203ENST00000377808 LARP1Q6PKG0 1096 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-203ENST00000377808 EDC4Q6P2E9 1401 aaKnown RBP16.17■□□□□ 0.18
SMARCE1-203ENST00000377808 ONECUT3O60422 494 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-203ENST00000377808 LMO7Q8WWI1 1683 aa16.16■□□□□ 0.18
SMARCE1-203ENST00000377808 CDCA8Q53HL2 280 aa16.16■□□□□ 0.18
SMARCE1-203ENST00000377808 POLR3GLQ9BT43 218 aa16.16■□□□□ 0.18
SMARCE1-203ENST00000377808 COL5A2P05997 1499 aaPredicted RBP16.15■□□□□ 0.18
SMARCE1-203ENST00000377808 AATKQ6ZMQ8 1374 aa16.14■□□□□ 0.17
SMARCE1-203ENST00000377808 CSB-PGBD3P0DP91 1061 aa16.14■□□□□ 0.17
SMARCE1-203ENST00000377808 SF3B2Q13435 895 aaKnown RBP16.14■□□□□ 0.17
SMARCE1-203ENST00000377808 TOM1L2Q6ZVM7 507 aa16.13■□□□□ 0.17
SMARCE1-203ENST00000377808 TCP11L2Q8N4U5 519 aa16.13■□□□□ 0.17
SMARCE1-203ENST00000377808 ANKRD36BQ8N2N9 1353 aa16.12■□□□□ 0.17
SMARCE1-203ENST00000377808 FAM182BQ5T319 152 aa16.12■□□□□ 0.17
SMARCE1-203ENST00000377808 ARHGEF25Q86VW2 580 aa16.12■□□□□ 0.17
SMARCE1-203ENST00000377808 EP400Q96L91 3159 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms