RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 NFX1Q12986 1120 aaKnown RBP5.52□□□□□ -1.53
VPS13A-206ENST00000376646 TSC1Q92574 1164 aa5.52□□□□□ -1.53
VPS13A-206ENST00000376646 FAM117AQ9C073 453 aa5.52□□□□□ -1.53
VPS13A-206ENST00000376646 KDM4CQ9H3R0 1056 aa5.52□□□□□ -1.53
VPS13A-206ENST00000376646 CCNYL3P0C7X3 344 aa5.51□□□□□ -1.53
VPS13A-206ENST00000376646 TOR4AQ9NXH8 423 aa5.51□□□□□ -1.53
VPS13A-206ENST00000376646 PER1O15534 1290 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-206ENST00000376646 LINC01559Q495D7 138 aa5.51□□□□□ -1.53
VPS13A-206ENST00000376646 FBXO31Q5XUX0 539 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-206ENST00000376646 CYP4X1Q8N118 509 aa5.51□□□□□ -1.53
VPS13A-206ENST00000376646 DIXDC1Q155Q3 683 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 RTL5Q5HYW3 569 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 ZBTB3Q9H5J0 574 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 NUTM2BA6NNL0 878 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 NUTM2EB1AL46 878 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 POTECB2RU33 542 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 J3QL48 77 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 WNT7AO00755 349 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 PTPRNQ16849 979 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 RC3H1Q5TC82 1133 aaKnown RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 NUTM2DQ5VT03 806 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 NUTM2AQ8IVF1 878 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-206ENST00000376646 MAP10Q9P2G4 905 aa5.5□□□□□ -1.53
VPS13A-206ENST00000376646 TTC24A2A3L6 582 aaPredicted RBP5.49□□□□□ -1.53
VPS13A-206ENST00000376646 GJA5P36382 358 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 CLK2P49760 499 aaKnown RBP5.49□□□□□ -1.53
VPS13A-206ENST00000376646 UNC93B1Q9H1C4 597 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 EVA1BQ9NVM1 165 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 DACH1Q9UI36 760 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 PLEKHG3A1L390 1219 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 SPDYE5A6NIY4 337 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 CTHP32929 405 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 PROCA1Q8NCQ7 364 aaPredicted RBP5.49□□□□□ -1.53
VPS13A-206ENST00000376646 BAP1Q92560 729 aa5.49□□□□□ -1.53
VPS13A-206ENST00000376646 RNF225M0QZC1 329 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-206ENST00000376646 LILRB3O75022 631 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 SH3BP2P78314 561 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 SMPD1P17405 629 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 KCNH2Q12809 1159 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 LYPD8Q6UX82 237 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 AAASQ9NRG9 546 aa5.48□□□□□ -1.53
VPS13A-206ENST00000376646 PRPF38BQ5VTL8 546 aaKnown RBP5.47□□□□□ -1.53
VPS13A-206ENST00000376646 DESI1Q6ICB0 168 aa5.47□□□□□ -1.53
VPS13A-206ENST00000376646 WNT7BP56706 349 aa5.46□□□□□ -1.53
VPS13A-206ENST00000376646 EHBP1Q8NDI1 1231 aa5.46□□□□□ -1.53
VPS13A-206ENST00000376646 SNIP1Q8TAD8 396 aaKnown RBP5.46□□□□□ -1.53
VPS13A-206ENST00000376646 HPS1Q92902 700 aa5.46□□□□□ -1.54
VPS13A-206ENST00000376646 ATP1B4Q9UN42 357 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-206ENST00000376646 ALDH1A1P00352 501 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 F12P00748 615 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-206ENST00000376646 TPRNQ4KMQ1 711 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 TLL2Q9Y6L7 1015 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 NEUROD2Q15784 382 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 ZNF511Q8NB15 262 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 RSPH6AQ9H0K4 717 aa5.45□□□□□ -1.54
VPS13A-206ENST00000376646 SIAH2O43255 324 aa5.44□□□□□ -1.54
VPS13A-206ENST00000376646 CTDSPL2Q05D32 466 aa5.44□□□□□ -1.54
VPS13A-206ENST00000376646 FOXJ1Q92949 421 aa5.44□□□□□ -1.54
VPS13A-206ENST00000376646 AXIN1O15169 862 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 AVPP01185 164 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 SKIV2LQ15477 1246 aaKnown RBP5.43□□□□□ -1.54
VPS13A-206ENST00000376646 TUSC1Q2TAM9 212 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 IL27Q8NEV9 243 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 LRRN4Q8WUT4 740 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 DDRGK1Q96HY6 314 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 GDF11O95390 407 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 SH3D19Q5HYK7 790 aa5.43□□□□□ -1.54
VPS13A-206ENST00000376646 C4orf48Q5BLP8 95 aa5.42□□□□□ -1.54
VPS13A-206ENST00000376646 HELBQ8NG08 1087 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-206ENST00000376646 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS13A-206ENST00000376646 BRPF1P55201 1214 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-206ENST00000376646 GMPR2Q9P2T1 348 aaKnown RBP5.41□□□□□ -1.54
VPS13A-206ENST00000376646 CRIPAKQ8N1N5 446 aa5.41□□□□□ -1.54
VPS13A-206ENST00000376646 COBLO75128 1261 aa5.4□□□□□ -1.54
VPS13A-206ENST00000376646 AGERQ15109 404 aa5.4□□□□□ -1.54
VPS13A-206ENST00000376646 LAMC2Q13753 1193 aa5.4□□□□□ -1.55
VPS13A-206ENST00000376646 AP1G2O75843 785 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 PRKCSHP14314 528 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-206ENST00000376646 ARID5BQ14865 1188 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 EPS8L1Q8TE68 723 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 KRTAP4-5Q9BYR2 181 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 WASF2Q9Y6W5 498 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 BMP1P13497 986 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 NR6A1Q15406 480 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 CTC1Q2NKJ3 1217 aa5.39□□□□□ -1.55
VPS13A-206ENST00000376646 HMX1Q9NP08 348 aaPredicted RBP5.39□□□□□ -1.55
VPS13A-206ENST00000376646 MAGEB6P1A0A0J9YX57 407 aa5.38□□□□□ -1.55
VPS13A-206ENST00000376646 VARSP26640 1264 aaKnown RBP5.38□□□□□ -1.55
VPS13A-206ENST00000376646 SMCPP49901 116 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-206ENST00000376646 Q8N3U1 123 aa5.38□□□□□ -1.55
VPS13A-206ENST00000376646 CARD14Q9BXL6 1004 aa5.38□□□□□ -1.55
VPS13A-206ENST00000376646 ATP13A2Q9NQ11 1180 aa5.38□□□□□ -1.55
VPS13A-206ENST00000376646 C11orf95C9JLR9 678 aaPredicted RBP5.37□□□□□ -1.55
VPS13A-206ENST00000376646 ADAM23O75077 832 aa5.37□□□□□ -1.55
VPS13A-206ENST00000376646 SNRPBP14678 240 aaKnown RBP5.37□□□□□ -1.55
VPS13A-206ENST00000376646 NNTQ13423 1086 aa5.37□□□□□ -1.55
VPS13A-206ENST00000376646 PPP2R2DQ66LE6 453 aa5.37□□□□□ -1.55
VPS13A-206ENST00000376646 RFC5P40937 340 aa5.36□□□□□ -1.55
VPS13A-206ENST00000376646 SLC16A10Q8TF71 515 aa5.36□□□□□ -1.55
VPS13A-206ENST00000376646 NR3C2P08235 984 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms