RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 TBC1D2Q9BYX2 928 aa18■□□□□ 0.47
CLCNKA-202ENST00000375692 SLC24A1O60721 1099 aa18■□□□□ 0.47
CLCNKA-202ENST00000375692 TBC1D32Q96NH3 1257 aa18■□□□□ 0.47
CLCNKA-202ENST00000375692 MTHFSP49914 203 aa17.99■□□□□ 0.47
CLCNKA-202ENST00000375692 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.99■□□□□ 0.47
CLCNKA-202ENST00000375692 UPF2Q9HAU5 1272 aaKnown RBP17.99■□□□□ 0.47
CLCNKA-202ENST00000375692 ALKQ9UM73 1620 aa17.99■□□□□ 0.47
CLCNKA-202ENST00000375692 PTPRMP28827 1452 aa17.98■□□□□ 0.47
CLCNKA-202ENST00000375692 UBR1Q8IWV7 1749 aa17.98■□□□□ 0.47
CLCNKA-202ENST00000375692 ARXQ96QS3 562 aa17.98■□□□□ 0.47
CLCNKA-202ENST00000375692 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
CLCNKA-202ENST00000375692 FAM43AQ8N2R8 423 aa17.97■□□□□ 0.47
CLCNKA-202ENST00000375692 METP08581 1390 aa17.97■□□□□ 0.47
CLCNKA-202ENST00000375692 PRAM1Q96QH2 718 aa17.97■□□□□ 0.47
CLCNKA-202ENST00000375692 SLC26A8Q96RN1 970 aa17.97■□□□□ 0.47
CLCNKA-202ENST00000375692 WAPLQ7Z5K2 1190 aa17.96■□□□□ 0.47
CLCNKA-202ENST00000375692 WDR63Q8IWG1 891 aa17.96■□□□□ 0.47
CLCNKA-202ENST00000375692 RWDD1Q9H446 243 aaPredicted RBP17.96■□□□□ 0.47
CLCNKA-202ENST00000375692 YTHDC2Q9H6S0 1430 aaKnown RBP17.96■□□□□ 0.46
CLCNKA-202ENST00000375692 ADAMTSL3P82987 1691 aa17.96■□□□□ 0.46
CLCNKA-202ENST00000375692 SHPRHQ149N8 1683 aa17.96■□□□□ 0.46
CLCNKA-202ENST00000375692 HDGFP51858 240 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-202ENST00000375692 THEMISQ8N1K5 641 aaPredicted RBP17.94■□□□□ 0.46
CLCNKA-202ENST00000375692 MINK1Q8N4C8 1332 aaPredicted RBP17.93■□□□□ 0.46
CLCNKA-202ENST00000375692 IQSEC2Q5JU85 1478 aa17.93■□□□□ 0.46
CLCNKA-202ENST00000375692 U2AF1L5P0DN76 240 aaPredicted RBP17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 U2AF1Q01081 240 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 TSR2Q969E8 191 aaKnown RBP17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 EID1Q9Y6B2 187 aa17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 AAMPQ13685 434 aa17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 MVPQ14764 893 aaKnown RBP17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 NRXN3Q9Y4C0 1643 aa17.92■□□□□ 0.46
CLCNKA-202ENST00000375692 GZF1Q9H116 711 aaPredicted RBP17.91■□□□□ 0.46
CLCNKA-202ENST00000375692 CABP2Q9NPB3 220 aa17.91■□□□□ 0.46
CLCNKA-202ENST00000375692 FTSJ3Q8IY81 847 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 MYH16Q9H6N6 1097 aa17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 RRAGDQ9NQL2 400 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 SBNO2Q9Y2G9 1366 aa17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 MFAP1P55081 439 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 CFAP53Q96M91 514 aa17.9■□□□□ 0.46
CLCNKA-202ENST00000375692 CCDC27Q2M243 656 aa17.89■□□□□ 0.46
CLCNKA-202ENST00000375692 ZKSCAN2Q63HK3 967 aa17.89■□□□□ 0.46
CLCNKA-202ENST00000375692 DZIP1LQ8IYY4 767 aaKnown RBP17.89■□□□□ 0.46
CLCNKA-202ENST00000375692 MYO3AQ8NEV4 1616 aa17.89■□□□□ 0.45
CLCNKA-202ENST00000375692 ADAMTS13Q76LX8 1427 aa17.89■□□□□ 0.45
CLCNKA-202ENST00000375692 ARHGEF28Q8N1W1 1705 aaKnown RBP17.89■□□□□ 0.45
CLCNKA-202ENST00000375692 QRICH2Q9H0J4 1663 aa17.88■□□□□ 0.45
CLCNKA-202ENST00000375692 L1TD1Q5T7N2 865 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-202ENST00000375692 C22orf23Q9BZE7 217 aa17.88■□□□□ 0.45
CLCNKA-202ENST00000375692 MCM4P33991 863 aa17.87■□□□□ 0.45
CLCNKA-202ENST00000375692 PLEKHG1Q9ULL1 1385 aa17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 EXOSC9Q06265 439 aaKnown RBP17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 SMC4Q9NTJ3 1288 aa17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 ARHGAP23Q9P227 1491 aa17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 XRCC6P12956 609 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 SETD1AO15047 1707 aaKnown RBP17.86■□□□□ 0.45
CLCNKA-202ENST00000375692 CEP170BQ9Y4F5 1589 aaPredicted RBP17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 EVC2Q86UK5 1308 aa17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 SRPK2P78362 688 aaKnown RBP17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 ABCC11Q96J66 1382 aa17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 SLIT1O75093 1534 aa17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 TRIM27P14373 513 aa17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 RSPH6AQ9H0K4 717 aa17.85■□□□□ 0.45
CLCNKA-202ENST00000375692 ITPRIPQ8IWB1 547 aa17.84■□□□□ 0.45
CLCNKA-202ENST00000375692 SSH1Q8WYL5 1049 aa17.84■□□□□ 0.45
CLCNKA-202ENST00000375692 PANK2Q9BZ23 570 aa17.84■□□□□ 0.45
CLCNKA-202ENST00000375692 TULP4Q9NRJ4 1543 aa17.84■□□□□ 0.45
CLCNKA-202ENST00000375692 U2SURPO15042 1029 aaKnown RBP17.84■□□□□ 0.45
CLCNKA-202ENST00000375692 GOLGA6L3A6NEY3 463 aa17.83■□□□□ 0.44
CLCNKA-202ENST00000375692 CDK19Q9BWU1 502 aa17.83■□□□□ 0.44
CLCNKA-202ENST00000375692 NOB1Q9ULX3 412 aaKnown RBP17.82■□□□□ 0.44
CLCNKA-202ENST00000375692 ROBO2Q9HCK4 1378 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 CHMP5Q9NZZ3 219 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 PTPRUQ92729 1446 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 KDM4FA0A1W2PPD8 638 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 FSD2A1L4K1 749 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 ANKLE2Q86XL3 938 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 AMOTL2Q9Y2J4 779 aa17.81■□□□□ 0.44
CLCNKA-202ENST00000375692 SETD1BQ9UPS6 1966 aaKnown RBP17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 TRAK2O60296 914 aa17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 HDAC1Q13547 482 aaPredicted RBP17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 TRIM35Q9UPQ4 493 aa17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 MED14O60244 1454 aa17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 TMPOP42166 694 aaKnown RBP17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 TBX22Q9Y458 520 aa17.8■□□□□ 0.44
CLCNKA-202ENST00000375692 ATF7IPQ6VMQ6 1270 aa17.79■□□□□ 0.44
CLCNKA-202ENST00000375692 TMEM57Q8N5G2 664 aa17.79■□□□□ 0.44
CLCNKA-202ENST00000375692 PLEKHF1Q96S99 279 aa17.79■□□□□ 0.44
CLCNKA-202ENST00000375692 NCKAP5LQ9HCH0 1330 aa17.78■□□□□ 0.44
CLCNKA-202ENST00000375692 GGNBP2Q9H3C7 697 aa17.78■□□□□ 0.44
CLCNKA-202ENST00000375692 DDX19BQ9UMR2 479 aa17.78■□□□□ 0.44
CLCNKA-202ENST00000375692 NUTM2FA1L443 756 aa17.77■□□□□ 0.43
CLCNKA-202ENST00000375692 SMC5Q8IY18 1101 aa17.77■□□□□ 0.43
CLCNKA-202ENST00000375692 RBM33Q96EV2 1170 aaKnown RBP17.77■□□□□ 0.43
CLCNKA-202ENST00000375692 HSCBQ8IWL3 235 aa17.76■□□□□ 0.43
CLCNKA-202ENST00000375692 ANKRD36BQ8N2N9 1353 aa17.76■□□□□ 0.43
CLCNKA-202ENST00000375692 CABP1Q9NZU7 370 aa17.76■□□□□ 0.43
CLCNKA-202ENST00000375692 CT47B1P0C2W7 299 aaPredicted RBP17.75■□□□□ 0.43
CLCNKA-202ENST00000375692 ZNF692Q9BU19 519 aaPredicted RBP17.75■□□□□ 0.43
CLCNKA-202ENST00000375692 LNPKQ9C0E8 428 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms