RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 MVPQ14764 893 aaKnown RBP12.23□□□□□ -0.45
CD28-202ENST00000374481 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 ZNF397Q8NF99 534 aaPredicted RBP12.23□□□□□ -0.45
CD28-202ENST00000374481 DNAAF4Q8WXU2 420 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 PRDM4Q9UKN5 801 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 CCP110O43303 1012 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 CCDC183Q5T5S1 534 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 DUSP27Q5VZP5 1158 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 BANK1Q8NDB2 785 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 FBXW7Q969H0 707 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 H3BQV1 296 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 RIOK3O14730 519 aaKnown RBP12.23□□□□□ -0.45
CD28-202ENST00000374481 IFFO2Q5TF58 517 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 PIBF1Q8WXW3 757 aa12.23□□□□□ -0.45
CD28-202ENST00000374481 LRPPRCP42704 1394 aaKnown RBP12.23□□□□□ -0.45
CD28-202ENST00000374481 CUX1P39880 1505 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 KIAA0754O94854 1291 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 CDR1P51861 262 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 TTC31Q49AM3 519 aaPredicted RBP12.22□□□□□ -0.45
CD28-202ENST00000374481 IGF1RP08069 1367 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 HCLS1P14317 486 aaPredicted RBP12.22□□□□□ -0.45
CD28-202ENST00000374481 PPP2R1AP30153 589 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 SNX21Q969T3 373 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 CT47A1Q5JQC4 288 aaPredicted RBP12.22□□□□□ -0.45
CD28-202ENST00000374481 CHD1LQ86WJ1 897 aa12.22□□□□□ -0.45
CD28-202ENST00000374481 FAM193AP78312 1265 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 FHOD3Q2V2M9 1422 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 CCDC70Q6NSX1 233 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 KDM2BQ8NHM5 1336 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 CEP135Q66GS9 1140 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 RUNDC1Q96C34 613 aa12.21□□□□□ -0.45
CD28-202ENST00000374481 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.21□□□□□ -0.45
CD28-202ENST00000374481 V9GYY5 206 aaPredicted RBP12.21□□□□□ -0.45
CD28-202ENST00000374481 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.21□□□□□ -0.45
CD28-202ENST00000374481 ELL2O00472 640 aaPredicted RBP12.21□□□□□ -0.46
CD28-202ENST00000374481 TPM1P09493 284 aa12.21□□□□□ -0.46
CD28-202ENST00000374481 ZNF445P59923 1031 aa12.21□□□□□ -0.46
CD28-202ENST00000374481 CCDC91Q7Z6B0 441 aa12.21□□□□□ -0.46
CD28-202ENST00000374481 MYCBPQ99417 103 aaPredicted RBP12.21□□□□□ -0.46
CD28-202ENST00000374481 TNMDQ9H2S6 317 aa12.21□□□□□ -0.46
CD28-202ENST00000374481 ERLIN1O75477 346 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 CCDC102AQ96A19 550 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 SLC26A8Q96RN1 970 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 BIVM-ERCC5R4GMW8 1640 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 GCC1Q96CN9 775 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 NCAPD3P42695 1498 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 RUFY1Q96T51 708 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 NAT10Q9H0A0 1025 aaKnown RBP12.2□□□□□ -0.46
CD28-202ENST00000374481 MIA2Q96PC5 1412 aa12.2□□□□□ -0.46
CD28-202ENST00000374481 CCDC73Q6ZRK6 1079 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 LRRFIP2Q9Y608 721 aaKnown RBP12.19□□□□□ -0.46
CD28-202ENST00000374481 SMTNL1A8MU46 457 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 CREBRFQ8IUR6 639 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 TRMT1Q9NXH9 659 aaKnown RBP12.19□□□□□ -0.46
CD28-202ENST00000374481 SMC2O95347 1197 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 C17orf53Q8N3J3 647 aaPredicted RBP12.19□□□□□ -0.46
CD28-202ENST00000374481 DRC1Q96MC2 740 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 A0A1B0GUL7 405 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 DHX37Q8IY37 1157 aaKnown RBP12.19□□□□□ -0.46
CD28-202ENST00000374481 FAM107BQ9H098 131 aa12.19□□□□□ -0.46
CD28-202ENST00000374481 IVLP07476 585 aa12.18□□□□□ -0.46
CD28-202ENST00000374481 FAM177A1Q8N128 213 aaPredicted RBP12.18□□□□□ -0.46
CD28-202ENST00000374481 GDPD2Q9HCC8 539 aa12.18□□□□□ -0.46
CD28-202ENST00000374481 IBSPP21815 317 aaPredicted RBP12.18□□□□□ -0.46
CD28-202ENST00000374481 NUP62CLQ9H1M0 184 aa12.18□□□□□ -0.46
CD28-202ENST00000374481 CENPHQ9H3R5 247 aa12.18□□□□□ -0.46
CD28-202ENST00000374481 KRBA2Q6ZNG9 492 aa12.18□□□□□ -0.46
CD28-202ENST00000374481 PLEKHH2Q8IVE3 1493 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 MAP3K11Q16584 847 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 TCP11L2Q8N4U5 519 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 CADPSQ9ULU8 1353 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 RSPH4AQ5TD94 716 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 ZNF526Q8TF50 670 aaPredicted RBP12.17□□□□□ -0.46
CD28-202ENST00000374481 GTF3C6Q969F1 213 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 HFM1A2PYH4 1435 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 TIAM1Q13009 1591 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 ZBTB22O15209 634 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 SLC4A10Q6U841 1118 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 CLIP2Q9UDT6 1046 aa12.17□□□□□ -0.46
CD28-202ENST00000374481 PLEKHD1A6NEE1 506 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 URI1O94763 535 aaPredicted RBP12.16□□□□□ -0.46
CD28-202ENST00000374481 GAS2L2Q8NHY3 880 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 ANTXR1Q9H6X2 564 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 CFTRP13569 1480 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 FMNL2Q96PY5 1086 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 SDF4Q9BRK5 362 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 CT47B1P0C2W7 299 aaPredicted RBP12.16□□□□□ -0.46
CD28-202ENST00000374481 ZSCAN20P17040 1043 aaPredicted RBP12.16□□□□□ -0.46
CD28-202ENST00000374481 CCDC186Q7Z3E2 898 aa12.16□□□□□ -0.46
CD28-202ENST00000374481 DHX8Q14562 1220 aaKnown RBP12.15□□□□□ -0.46
CD28-202ENST00000374481 ANKRD20A12PQ8NF67 263 aa12.15□□□□□ -0.46
CD28-202ENST00000374481 ERC2O15083 957 aa12.15□□□□□ -0.46
CD28-202ENST00000374481 SLU7O95391 586 aaKnown RBP12.15□□□□□ -0.46
CD28-202ENST00000374481 DDX11Q96FC9 970 aa12.15□□□□□ -0.46
CD28-202ENST00000374481 ZNF622Q969S3 477 aaKnown RBP eCLIP12.15□□□□□ -0.46
CD28-202ENST00000374481 NEMFO60524 1076 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 NKTRP30414 1462 aaKnown RBP12.14□□□□□ -0.47
CD28-202ENST00000374481 HMGXB3Q12766 1538 aa12.14□□□□□ -0.47
CD28-202ENST00000374481 ZKSCAN1P17029 563 aaPredicted RBP12.14□□□□□ -0.47
CD28-202ENST00000374481 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms