RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 HDGFL2Q7Z4V5 671 aaPredicted RBP16.72■□□□□ 0.27
PRPF4-202ENST00000374199 PEAK1Q9H792 1746 aa16.71■□□□□ 0.27
PRPF4-202ENST00000374199 EID1Q9Y6B2 187 aa16.71■□□□□ 0.27
PRPF4-202ENST00000374199 MTHFSP49914 203 aa16.7■□□□□ 0.26
PRPF4-202ENST00000374199 SLFN5Q08AF3 891 aa16.7■□□□□ 0.26
PRPF4-202ENST00000374199 PPP4R2Q9NY27 417 aa16.7■□□□□ 0.26
PRPF4-202ENST00000374199 USP6P35125 1406 aa16.7■□□□□ 0.26
PRPF4-202ENST00000374199 CDCA7LQ96GN5 454 aa16.7■□□□□ 0.26
PRPF4-202ENST00000374199 NUDT16Q96DE0 195 aaKnown RBP16.69■□□□□ 0.26
PRPF4-202ENST00000374199 PLEKHF1Q96S99 279 aa16.69■□□□□ 0.26
PRPF4-202ENST00000374199 CCDC61Q9Y6R9 512 aa16.69■□□□□ 0.26
PRPF4-202ENST00000374199 USP31Q70CQ4 1352 aa16.69■□□□□ 0.26
PRPF4-202ENST00000374199 PHRF1Q9P1Y6 1649 aaKnown RBP16.68■□□□□ 0.26
PRPF4-202ENST00000374199 RRP1P56182 461 aaKnown RBP16.68■□□□□ 0.26
PRPF4-202ENST00000374199 RCAN3Q9UKA8 241 aa16.67■□□□□ 0.26
PRPF4-202ENST00000374199 RUNDC1Q96C34 613 aa16.66■□□□□ 0.26
PRPF4-202ENST00000374199 ZNF692Q9BU19 519 aaPredicted RBP16.66■□□□□ 0.26
PRPF4-202ENST00000374199 GOLGA2Q08379 1002 aa16.64■□□□□ 0.26
PRPF4-202ENST00000374199 CFAP53Q96M91 514 aa16.64■□□□□ 0.25
PRPF4-202ENST00000374199 AMOTL2Q9Y2J4 779 aa16.64■□□□□ 0.25
PRPF4-202ENST00000374199 GGNBP2Q9H3C7 697 aa16.63■□□□□ 0.25
PRPF4-202ENST00000374199 APAF1O14727 1248 aa16.62■□□□□ 0.25
PRPF4-202ENST00000374199 WWC1Q8IX03 1113 aa16.62■□□□□ 0.25
PRPF4-202ENST00000374199 POLKQ9UBT6 870 aa16.62■□□□□ 0.25
PRPF4-202ENST00000374199 DLG5Q8TDM6 1919 aa16.61■□□□□ 0.25
PRPF4-202ENST00000374199 E9PSI1 815 aa16.61■□□□□ 0.25
PRPF4-202ENST00000374199 WDR63Q8IWG1 891 aa16.61■□□□□ 0.25
PRPF4-202ENST00000374199 SPINK5Q9NQ38 1064 aaPredicted RBP16.61■□□□□ 0.25
PRPF4-202ENST00000374199 NPHP4O75161 1426 aaPredicted RBP16.6■□□□□ 0.25
PRPF4-202ENST00000374199 MST1RQ04912 1400 aa16.6■□□□□ 0.25
PRPF4-202ENST00000374199 ADGRL3Q9HAR2 1447 aa16.59■□□□□ 0.25
PRPF4-202ENST00000374199 CCDC146Q8IYE0 955 aa16.59■□□□□ 0.25
PRPF4-202ENST00000374199 DMRT2Q9Y5R5 561 aa16.59■□□□□ 0.25
PRPF4-202ENST00000374199 TRPM3Q9HCF6 1732 aaPredicted RBP16.59■□□□□ 0.25
PRPF4-202ENST00000374199 SLC26A8Q96RN1 970 aa16.59■□□□□ 0.25
PRPF4-202ENST00000374199 STRCP1A6NGW2 1772 aa16.59■□□□□ 0.25
PRPF4-202ENST00000374199 TTC21AQ8NDW8 1320 aa16.58■□□□□ 0.24
PRPF4-202ENST00000374199 NCKAP5LQ9HCH0 1330 aa16.58■□□□□ 0.24
PRPF4-202ENST00000374199 SENP3Q9H4L4 574 aaPredicted RBP16.57■□□□□ 0.24
PRPF4-202ENST00000374199 TTC21BQ7Z4L5 1316 aa16.57■□□□□ 0.24
PRPF4-202ENST00000374199 IRX6P78412 446 aaPredicted RBP16.57■□□□□ 0.24
PRPF4-202ENST00000374199 TCP11L2Q8N4U5 519 aa16.57■□□□□ 0.24
PRPF4-202ENST00000374199 KIF1AQ12756 1690 aa16.56■□□□□ 0.24
PRPF4-202ENST00000374199 BCANQ96GW7 911 aa16.56■□□□□ 0.24
PRPF4-202ENST00000374199 TSHZ2Q9NRE2 1034 aa16.56■□□□□ 0.24
PRPF4-202ENST00000374199 ACEP12821 1306 aa16.56■□□□□ 0.24
PRPF4-202ENST00000374199 IL16Q14005 1332 aa16.56■□□□□ 0.24
PRPF4-202ENST00000374199 IL13P35225 146 aa16.55■□□□□ 0.24
PRPF4-202ENST00000374199 ANKLE2Q86XL3 938 aa16.55■□□□□ 0.24
PRPF4-202ENST00000374199 NME9Q86XW9 330 aa16.55■□□□□ 0.24
PRPF4-202ENST00000374199 KCNA6P17658 529 aa16.54■□□□□ 0.24
PRPF4-202ENST00000374199 RSPH6AQ9H0K4 717 aa16.54■□□□□ 0.24
PRPF4-202ENST00000374199 KIF24Q5T7B8 1368 aa16.54■□□□□ 0.24
PRPF4-202ENST00000374199 TNNT2P45379 298 aaPredicted RBP16.54■□□□□ 0.24
PRPF4-202ENST00000374199 LRRC37A3O60309 1634 aa16.54■□□□□ 0.24
PRPF4-202ENST00000374199 SENP3-EIF4A1A0A087X0R7 540 aa16.53■□□□□ 0.24
PRPF4-202ENST00000374199 FCHSD2O94868 740 aa16.53■□□□□ 0.24
PRPF4-202ENST00000374199 NFAT5O94916 1531 aa16.53■□□□□ 0.24
PRPF4-202ENST00000374199 CAMTA1Q9Y6Y1 1673 aa16.53■□□□□ 0.24
PRPF4-202ENST00000374199 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
PRPF4-202ENST00000374199 TRIM35Q9UPQ4 493 aa16.53■□□□□ 0.24
PRPF4-202ENST00000374199 NCOA3Q9Y6Q9 1424 aa16.52■□□□□ 0.24
PRPF4-202ENST00000374199 XIRP1Q702N8 1843 aaKnown RBP16.51■□□□□ 0.23
PRPF4-202ENST00000374199 LTN1O94822 1766 aa16.51■□□□□ 0.23
PRPF4-202ENST00000374199 SLIT3O75094 1523 aa16.51■□□□□ 0.23
PRPF4-202ENST00000374199 SALL2Q9Y467 1007 aaPredicted RBP16.51■□□□□ 0.23
PRPF4-202ENST00000374199 ALS2Q96Q42 1657 aa16.5■□□□□ 0.23
PRPF4-202ENST00000374199 PNNQ9H307 717 aaKnown RBP16.49■□□□□ 0.23
PRPF4-202ENST00000374199 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
PRPF4-202ENST00000374199 TMPOP42166 694 aaKnown RBP16.49■□□□□ 0.23
PRPF4-202ENST00000374199 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.49■□□□□ 0.237e-6■■□□□ 11.5
PRPF4-202ENST00000374199 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
PRPF4-202ENST00000374199 COG3Q96JB2 828 aa16.49■□□□□ 0.23
PRPF4-202ENST00000374199 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
PRPF4-202ENST00000374199 STRCQ7RTU9 1775 aa16.48■□□□□ 0.23
PRPF4-202ENST00000374199 DCCP43146 1447 aa16.48■□□□□ 0.23
PRPF4-202ENST00000374199 U2AF1L5P0DN76 240 aaPredicted RBP16.47■□□□□ 0.23
PRPF4-202ENST00000374199 U2AF1Q01081 240 aaKnown RBP eCLIP16.47■□□□□ 0.23
PRPF4-202ENST00000374199 KDRP35968 1356 aa16.47■□□□□ 0.23
PRPF4-202ENST00000374199 EMILIN1Q9Y6C2 1016 aa16.46■□□□□ 0.23
PRPF4-202ENST00000374199 ARHGEF10O15013 1369 aa16.46■□□□□ 0.22
PRPF4-202ENST00000374199 EXOC6Q8TAG9 804 aa16.45■□□□□ 0.22
PRPF4-202ENST00000374199 SBNO1A3KN83 1393 aa16.45■□□□□ 0.22
PRPF4-202ENST00000374199 NCAPD2Q15021 1401 aa16.45■□□□□ 0.22
PRPF4-202ENST00000374199 B4GALNT3Q6L9W6 998 aa16.45■□□□□ 0.22
PRPF4-202ENST00000374199 LMO7Q8WWI1 1683 aa16.45■□□□□ 0.22
PRPF4-202ENST00000374199 KDM2BQ8NHM5 1336 aa16.44■□□□□ 0.22
PRPF4-202ENST00000374199 RTL1A6NKG5 1358 aa16.44■□□□□ 0.22
PRPF4-202ENST00000374199 LMTK3Q96Q04 1460 aa16.43■□□□□ 0.22
PRPF4-202ENST00000374199 PDE3AQ14432 1141 aa16.42■□□□□ 0.22
PRPF4-202ENST00000374199 C20orf194Q5TEA3 1177 aa16.42■□□□□ 0.22
PRPF4-202ENST00000374199 ZNF853P0CG23 659 aa16.41■□□□□ 0.22
PRPF4-202ENST00000374199 FBLN1P23142 703 aa16.41■□□□□ 0.22
PRPF4-202ENST00000374199 RARSP54136 660 aaKnown RBP16.41■□□□□ 0.22
PRPF4-202ENST00000374199 FLT4P35916 1363 aa16.41■□□□□ 0.22
PRPF4-202ENST00000374199 BRPF1P55201 1214 aaPredicted RBP16.41■□□□□ 0.22
PRPF4-202ENST00000374199 MYH16Q9H6N6 1097 aa16.41■□□□□ 0.22
PRPF4-202ENST00000374199 FANCIQ9NVI1 1328 aa16.41■□□□□ 0.22
PRPF4-202ENST00000374199 ABCC6O95255 1503 aa16.4■□□□□ 0.22
PRPF4-202ENST00000374199 NFE2L2Q16236 605 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms