RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ROCK2O75116 1388 aaKnown RBP31.11■■■□□ 2.57
CCDC28B-201ENST00000373602 SRPK2P78362 688 aaKnown RBP31.11■■■□□ 2.57
CCDC28B-201ENST00000373602 NWD2Q9ULI1 1742 aa31.1■■■□□ 2.57
CCDC28B-201ENST00000373602 RALGAPBQ86X10 1494 aa31.1■■■□□ 2.57
CCDC28B-201ENST00000373602 FAM83GA6ND36 823 aa31.1■■■□□ 2.57
CCDC28B-201ENST00000373602 NBPF8Q3BBV2 869 aa31.1■■■□□ 2.57
CCDC28B-201ENST00000373602 PLCH1Q4KWH8 1693 aa31.09■■■□□ 2.57
CCDC28B-201ENST00000373602 CABP2Q9NPB3 220 aa31.08■■■□□ 2.57
CCDC28B-201ENST00000373602 GLI3P10071 1580 aa31.08■■■□□ 2.57
CCDC28B-201ENST00000373602 CRYBG1Q9Y4K1 1723 aa31.07■■■□□ 2.56
CCDC28B-201ENST00000373602 VPS72Q15906 364 aa31.07■■■□□ 2.56
CCDC28B-201ENST00000373602 ATAD2Q6PL18 1390 aa31.06■■■□□ 2.56
CCDC28B-201ENST00000373602 PPIP5K1Q6PFW1 1433 aa31.06■■■□□ 2.56
CCDC28B-201ENST00000373602 COL14A1Q05707 1796 aaKnown RBP31.02■■■□□ 2.56
CCDC28B-201ENST00000373602 TONSLQ96HA7 1378 aa31.01■■■□□ 2.55
CCDC28B-201ENST00000373602 EVC2Q86UK5 1308 aa31■■■□□ 2.55
CCDC28B-201ENST00000373602 BTG4Q9NY30 223 aa31■■■□□ 2.55
CCDC28B-201ENST00000373602 NRAPQ86VF7 1730 aa30.98■■■□□ 2.55
CCDC28B-201ENST00000373602 NUTM2GQ5VZR2 741 aa30.97■■■□□ 2.55
CCDC28B-201ENST00000373602 CABP1Q9NZU7 370 aa30.97■■■□□ 2.55
CCDC28B-201ENST00000373602 CCDC9Q9Y3X0 531 aaKnown RBP30.97■■■□□ 2.55
CCDC28B-201ENST00000373602 PRDM11Q9NQV5 511 aa30.96■■■□□ 2.55
CCDC28B-201ENST00000373602 PHRF1Q9P1Y6 1649 aaKnown RBP30.95■■■□□ 2.55
CCDC28B-201ENST00000373602 BRD4O60885 1362 aaPredicted RBP30.95■■■□□ 2.55
CCDC28B-201ENST00000373602 ONECUT3O60422 494 aaPredicted RBP30.95■■■□□ 2.55
CCDC28B-201ENST00000373602 ABTB2Q8N961 1025 aa30.95■■■□□ 2.55
CCDC28B-201ENST00000373602 KIAA0232Q92628 1395 aa30.93■■■□□ 2.54
CCDC28B-201ENST00000373602 SEPT12Q8IYM1 358 aa30.93■■■□□ 2.54
CCDC28B-201ENST00000373602 CARD11Q9BXL7 1154 aa30.92■■■□□ 2.54
CCDC28B-201ENST00000373602 USP6P35125 1406 aa30.9■■■□□ 2.54
CCDC28B-201ENST00000373602 USP19O94966 1318 aa30.9■■■□□ 2.54
CCDC28B-201ENST00000373602 ZC3H6P61129 1189 aaKnown RBP30.89■■■□□ 2.54
CCDC28B-201ENST00000373602 SBNO2Q9Y2G9 1366 aa30.89■■■□□ 2.54
CCDC28B-201ENST00000373602 CHRNA2Q15822 529 aa30.88■■■□□ 2.53
CCDC28B-201ENST00000373602 NLRP13Q86W25 1043 aa30.88■■■□□ 2.53
CCDC28B-201ENST00000373602 BRWD3Q6RI45 1802 aa30.88■■■□□ 2.53
CCDC28B-201ENST00000373602 NRKQ7Z2Y5 1582 aa30.87■■■□□ 2.53
CCDC28B-201ENST00000373602 CCDC125Q86Z20 511 aa30.86■■■□□ 2.53
CCDC28B-201ENST00000373602 SSH2Q76I76 1423 aa30.86■■■□□ 2.53
CCDC28B-201ENST00000373602 SPATA31A5Q5VU36 1347 aa30.85■■■□□ 2.53
CCDC28B-201ENST00000373602 SPATA31A7Q8IWB4 1347 aa30.85■■■□□ 2.53
CCDC28B-201ENST00000373602 CPDO75976 1380 aa30.83■■■□□ 2.53
CCDC28B-201ENST00000373602 FAM98CQ17RN3 349 aaKnown RBP30.83■■■□□ 2.53
CCDC28B-201ENST00000373602 GCP02774 474 aa30.82■■■□□ 2.52
CCDC28B-201ENST00000373602 ZNF692Q9BU19 519 aaPredicted RBP30.82■■■□□ 2.52
CCDC28B-201ENST00000373602 KRT27Q7Z3Y8 459 aa30.81■■■□□ 2.52
CCDC28B-201ENST00000373602 NLRP6P59044 892 aa30.79■■■□□ 2.52
CCDC28B-201ENST00000373602 A0A0G2JS52 829 aa30.78■■■□□ 2.52
CCDC28B-201ENST00000373602 MYT1Q01538 1121 aa30.78■■■□□ 2.52
CCDC28B-201ENST00000373602 STRN4Q9NRL3 753 aa30.78■■■□□ 2.52
CCDC28B-201ENST00000373602 AKAP12Q02952 1782 aa30.78■■■□□ 2.52
CCDC28B-201ENST00000373602 CPSF1Q10570 1443 aaKnown RBP30.78■■■□□ 2.52
CCDC28B-201ENST00000373602 SPATA31A1Q5TZJ5 1347 aa30.76■■■□□ 2.52
CCDC28B-201ENST00000373602 TTC21BQ7Z4L5 1316 aa30.76■■■□□ 2.52
CCDC28B-201ENST00000373602 BLMP54132 1417 aaPredicted RBP30.76■■■□□ 2.51
CCDC28B-201ENST00000373602 CAMTA1Q9Y6Y1 1673 aa30.76■■■□□ 2.51
CCDC28B-201ENST00000373602 SLIT3O75094 1523 aa30.76■■■□□ 2.51
CCDC28B-201ENST00000373602 PIK3C2AO00443 1686 aa30.75■■■□□ 2.51
CCDC28B-201ENST00000373602 LMO7Q8WWI1 1683 aa30.75■■■□□ 2.51
CCDC28B-201ENST00000373602 EVA1CP58658 441 aa30.73■■■□□ 2.51
CCDC28B-201ENST00000373602 THSD7AQ9UPZ6 1657 aa30.73■■■□□ 2.51
CCDC28B-201ENST00000373602 EP400Q96L91 3159 aa30.73■■■□□ 2.51
CCDC28B-201ENST00000373602 TTC21AQ8NDW8 1320 aa30.73■■■□□ 2.51
CCDC28B-201ENST00000373602 KTN1Q86UP2 1357 aaKnown RBP30.71■■■□□ 2.51
CCDC28B-201ENST00000373602 LARP1Q6PKG0 1096 aaKnown RBP30.68■■■□□ 2.5
CCDC28B-201ENST00000373602 PUS7Q96PZ0 661 aaKnown RBP30.68■■■□□ 2.5
CCDC28B-201ENST00000373602 MON2Q7Z3U7 1717 aa30.67■■■□□ 2.5
CCDC28B-201ENST00000373602 AATKQ6ZMQ8 1374 aa30.66■■■□□ 2.5
CCDC28B-201ENST00000373602 COL5A2P05997 1499 aaPredicted RBP30.66■■■□□ 2.5
CCDC28B-201ENST00000373602 CD163L1Q9NR16 1453 aa30.66■■■□□ 2.5
CCDC28B-201ENST00000373602 BARGINQ6ZT62 677 aa30.66■■■□□ 2.5
CCDC28B-201ENST00000373602 TESK2Q96S53 571 aa30.66■■■□□ 2.5
CCDC28B-201ENST00000373602 ST20-MTHFSA0A0A6YYL1 179 aa30.65■■■□□ 2.5
CCDC28B-201ENST00000373602 SF3B2Q13435 895 aaKnown RBP30.65■■■□□ 2.5
CCDC28B-201ENST00000373602 TMC1Q8TDI8 760 aa30.65■■■□□ 2.5
CCDC28B-201ENST00000373602 USP35Q9P2H5 1018 aa30.65■■■□□ 2.5
CCDC28B-201ENST00000373602 ZBTB7CA1YPR0 619 aa30.63■■■□□ 2.49
CCDC28B-201ENST00000373602 KCNH5Q8NCM2 988 aa30.63■■■□□ 2.49
CCDC28B-201ENST00000373602 SLC12A5Q9H2X9 1139 aa30.63■■■□□ 2.49
CCDC28B-201ENST00000373602 TCP11L2Q8N4U5 519 aa30.62■■■□□ 2.49
CCDC28B-201ENST00000373602 SLC24A1O60721 1099 aa30.61■■■□□ 2.49
CCDC28B-201ENST00000373602 DEFB132Q7Z7B7 95 aa30.61■■■□□ 2.49
CCDC28B-201ENST00000373602 CLSPNQ9HAW4 1339 aa30.61■■■□□ 2.49
CCDC28B-201ENST00000373602 COL18A1P39060 1754 aa30.6■■■□□ 2.49
CCDC28B-201ENST00000373602 FAM182BQ5T319 152 aa30.6■■■□□ 2.49
CCDC28B-201ENST00000373602 HDGFL2Q7Z4V5 671 aaPredicted RBP30.6■■■□□ 2.49
CCDC28B-201ENST00000373602 ARHGEF25Q86VW2 580 aa30.6■■■□□ 2.49
CCDC28B-201ENST00000373602 THRAP3Q9Y2W1 955 aaKnown RBP30.6■■■□□ 2.49
CCDC28B-201ENST00000373602 USP31Q70CQ4 1352 aa30.59■■■□□ 2.49
CCDC28B-201ENST00000373602 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.59■■■□□ 2.49
CCDC28B-201ENST00000373602 PCGF6Q9BYE7 350 aa30.59■■■□□ 2.49
CCDC28B-201ENST00000373602 TIMELESSQ9UNS1 1208 aa30.59■■■□□ 2.49
CCDC28B-201ENST00000373602 ZRANB1Q9UGI0 708 aa30.58■■■□□ 2.49
CCDC28B-201ENST00000373602 CRB1P82279 1406 aa30.57■■■□□ 2.48
CCDC28B-201ENST00000373602 TERF2IPQ9NYB0 399 aa30.57■■■□□ 2.48
CCDC28B-201ENST00000373602 AXIN2Q9Y2T1 843 aa30.56■■■□□ 2.48
CCDC28B-201ENST00000373602 NFAT5O94916 1531 aa30.56■■■□□ 2.48
CCDC28B-201ENST00000373602 A0A1W2PP64 1363 aa30.55■■■□□ 2.48
CCDC28B-201ENST00000373602 SOX12O15370 315 aa30.55■■■□□ 2.48
CCDC28B-201ENST00000373602 EDC4Q6P2E9 1401 aaKnown RBP30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms