RNA–Protein interactions for RNA: ENST00000367621.1

VTA1-201, Transcript of vesicle trafficking 1, humanhuman

TSL 5 BASIC

Gene VTA1, Length 1,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-201ENST00000367621 TRIM35Q9UPQ4 493 aa13.12□□□□□ -0.31
VTA1-201ENST00000367621 ARHGEF28Q8N1W1 1705 aaKnown RBP13.12□□□□□ -0.31
VTA1-201ENST00000367621 ROBO2Q9HCK4 1378 aa13.11□□□□□ -0.31
VTA1-201ENST00000367621 SETD1BQ9UPS6 1966 aaKnown RBP13.11□□□□□ -0.31
VTA1-201ENST00000367621 SAFB2Q14151 953 aaKnown RBP eCLIP13.11□□□□□ -0.31
VTA1-201ENST00000367621 TULP4Q9NRJ4 1543 aa13.11□□□□□ -0.31
VTA1-201ENST00000367621 FAM135BQ49AJ0 1406 aa13.11□□□□□ -0.31
VTA1-201ENST00000367621 PANK3Q9H999 370 aa13.1□□□□□ -0.31
VTA1-201ENST00000367621 POGKQ9P215 609 aa13.1□□□□□ -0.31
VTA1-201ENST00000367621 NCKAP5LQ9HCH0 1330 aa13.1□□□□□ -0.31
VTA1-201ENST00000367621 MINK1Q8N4C8 1332 aaPredicted RBP13.09□□□□□ -0.31
VTA1-201ENST00000367621 ANP32CO43423 234 aa13.08□□□□□ -0.32
VTA1-201ENST00000367621 AMOTL2Q9Y2J4 779 aa13.08□□□□□ -0.32
VTA1-201ENST00000367621 EVC2Q86UK5 1308 aa13.08□□□□□ -0.32
VTA1-201ENST00000367621 CPS1P31327 1500 aa13.08□□□□□ -0.32
VTA1-201ENST00000367621 PIK3R4Q99570 1358 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 DIP2AQ14689 1571 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 NPHP4O75161 1426 aaPredicted RBP13.07□□□□□ -0.32
VTA1-201ENST00000367621 IFNL1Q8IU54 200 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 FAM212AQ96EL1 285 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 PRKRIP1Q9H875 184 aaPredicted RBP13.07□□□□□ -0.32
VTA1-201ENST00000367621 CABP2Q9NPB3 220 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 QRICH2Q9H0J4 1663 aa13.07□□□□□ -0.32
VTA1-201ENST00000367621 CDK19Q9BWU1 502 aa13.05□□□□□ -0.32
VTA1-201ENST00000367621 PTCH1Q13635 1447 aa13.05□□□□□ -0.32
VTA1-201ENST00000367621 LMTK3Q96Q04 1460 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 CCER2I3L3R5 266 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 HSPA2P54652 639 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 CARD14Q9BXL6 1004 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 SLC12A5Q9H2X9 1139 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 KNDC1Q76NI1 1749 aa13.04□□□□□ -0.32
VTA1-201ENST00000367621 WASLO00401 505 aaPredicted RBP13.03□□□□□ -0.32
VTA1-201ENST00000367621 KCNA6P17658 529 aa13.03□□□□□ -0.32
VTA1-201ENST00000367621 MYOM1P52179 1685 aa13.02□□□□□ -0.32
VTA1-201ENST00000367621 FBXO3Q9UK99 471 aa13.02□□□□□ -0.33
VTA1-201ENST00000367621 XRN1Q8IZH2 1706 aaKnown RBP13.02□□□□□ -0.33
VTA1-201ENST00000367621 CCDC184Q52MB2 194 aa13.01□□□□□ -0.33
VTA1-201ENST00000367621 TMEM106CQ9BVX2 250 aa13.01□□□□□ -0.33
VTA1-201ENST00000367621 ATAD2Q6PL18 1390 aa13□□□□□ -0.33
VTA1-201ENST00000367621 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
VTA1-201ENST00000367621 PARD3Q8TEW0 1356 aa12.99□□□□□ -0.33
VTA1-201ENST00000367621 PRR36Q9H6K5 1346 aa12.99□□□□□ -0.33
VTA1-201ENST00000367621 TMC1Q8TDI8 760 aa12.99□□□□□ -0.33
VTA1-201ENST00000367621 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.99□□□□□ -0.33
VTA1-201ENST00000367621 CD163L1Q9NR16 1453 aa12.98□□□□□ -0.33
VTA1-201ENST00000367621 NPC1L1Q9UHC9 1359 aa12.98□□□□□ -0.33
VTA1-201ENST00000367621 NINLQ9Y2I6 1382 aa12.98□□□□□ -0.33
VTA1-201ENST00000367621 ANKRD36BQ8N2N9 1353 aa12.97□□□□□ -0.33
VTA1-201ENST00000367621 RALBP1Q15311 655 aa12.97□□□□□ -0.33
VTA1-201ENST00000367621 NUDT16Q96DE0 195 aaKnown RBP12.97□□□□□ -0.33
VTA1-201ENST00000367621 CABP1Q9NZU7 370 aa12.97□□□□□ -0.33
VTA1-201ENST00000367621 KNSTRNQ9Y448 316 aa12.97□□□□□ -0.33
VTA1-201ENST00000367621 ADGRB2O60241 1585 aa12.97□□□□□ -0.33
VTA1-201ENST00000367621 KTN1Q86UP2 1357 aaKnown RBP12.96□□□□□ -0.33
VTA1-201ENST00000367621 IRX5P78411 483 aaPredicted RBP12.96□□□□□ -0.33
VTA1-201ENST00000367621 CC2D1BQ5T0F9 858 aaKnown RBP12.96□□□□□ -0.33
VTA1-201ENST00000367621 A0A1W2PP64 1363 aa12.95□□□□□ -0.34
VTA1-201ENST00000367621 PLCG2P16885 1265 aa12.95□□□□□ -0.34
VTA1-201ENST00000367621 CNGB1Q14028 1251 aaPredicted RBP12.95□□□□□ -0.34
VTA1-201ENST00000367621 NSD3Q9BZ95 1437 aa12.95□□□□□ -0.34
VTA1-201ENST00000367621 NWD1Q149M9 1564 aa12.94□□□□□ -0.34
VTA1-201ENST00000367621 ATP7BP35670 1465 aa12.94□□□□□ -0.34
VTA1-201ENST00000367621 CHD2O14647 1828 aaKnown RBP12.93□□□□□ -0.34
VTA1-201ENST00000367621 SLAIN1Q8ND83 568 aa12.93□□□□□ -0.34
VTA1-201ENST00000367621 RBM33Q96EV2 1170 aaKnown RBP12.93□□□□□ -0.34
VTA1-201ENST00000367621 CPSF1Q10570 1443 aaKnown RBP12.93□□□□□ -0.34
VTA1-201ENST00000367621 MYBBP1AQ9BQG0 1328 aaKnown RBP12.92□□□□□ -0.34
VTA1-201ENST00000367621 PLEKHG3A1L390 1219 aa12.92□□□□□ -0.34
VTA1-201ENST00000367621 PPIP5K1Q6PFW1 1433 aa12.92□□□□□ -0.34
VTA1-201ENST00000367621 TERF2IPQ9NYB0 399 aa12.92□□□□□ -0.34
VTA1-201ENST00000367621 ADGRL3Q9HAR2 1447 aa12.9□□□□□ -0.34
VTA1-201ENST00000367621 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
VTA1-201ENST00000367621 STRCQ7RTU9 1775 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 NUTM2FA1L443 756 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 PPP2R1AP30153 589 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 HDGFL2Q7Z4V5 671 aaPredicted RBP12.89□□□□□ -0.35
VTA1-201ENST00000367621 CDAN1Q8IWY9 1227 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 OCEL1Q9H607 264 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 MRS2Q9HD23 443 aa12.89□□□□□ -0.35
VTA1-201ENST00000367621 BRD4O60885 1362 aaPredicted RBP12.89□□□□□ -0.35
VTA1-201ENST00000367621 NKTRP30414 1462 aaKnown RBP12.89□□□□□ -0.35
VTA1-201ENST00000367621 CGNL1Q0VF96 1302 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 ANKARQ7Z5J8 1434 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 FYB1O15117 783 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 ST18O60284 1047 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 DCAF8Q5TAQ9 597 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 NLRP13Q86W25 1043 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 PROSER2Q86WR7 435 aaPredicted RBP12.88□□□□□ -0.35
VTA1-201ENST00000367621 PNISRQ8TF01 805 aaKnown RBP12.88□□□□□ -0.35
VTA1-201ENST00000367621 YTHDC1Q96MU7 727 aaKnown RBP12.88□□□□□ -0.35
VTA1-201ENST00000367621 USP32Q8NFA0 1604 aa12.88□□□□□ -0.35
VTA1-201ENST00000367621 CDC42BPGQ6DT37 1551 aa12.86□□□□□ -0.35
VTA1-201ENST00000367621 POLR3AO14802 1390 aaPredicted RBP12.86□□□□□ -0.35
VTA1-201ENST00000367621 NSD2O96028 1365 aa12.86□□□□□ -0.35
VTA1-201ENST00000367621 SSH2Q76I76 1423 aa12.86□□□□□ -0.35
VTA1-201ENST00000367621 ACEP12821 1306 aa12.86□□□□□ -0.35
VTA1-201ENST00000367621 TMEM94Q12767 1356 aa12.85□□□□□ -0.35
VTA1-201ENST00000367621 PYGBP11216 843 aa12.85□□□□□ -0.35
VTA1-201ENST00000367621 TOPAZ1Q8N9V7 1692 aa12.85□□□□□ -0.35
VTA1-201ENST00000367621 EDC4Q6P2E9 1401 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms