RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 ARHGAP31Q2M1Z3 1444 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 CLUAP1Q96AJ1 413 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 TSR1Q2NL82 804 aaKnown RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 RUBCNQ92622 972 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 PPP4R3BQ5MIZ7 849 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 NUTM2DQ5VT03 806 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 JMYQ8N9B5 988 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 CUX1P39880 1505 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 CT47A1Q5JQC4 288 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 ZNF622Q969S3 477 aaKnown RBP eCLIP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 FAM177BA6PVY3 158 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 FOSBP53539 338 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 APOBRQ0VD83 1088 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 ELL2O00472 640 aaPredicted RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 ANKRD27Q96NW4 1050 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 PAIP2Q9BPZ3 127 aaKnown RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 MRGBPQ9NV56 204 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 CCDC112Q8NEF3 446 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 KIF1CO43896 1103 aaKnown RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 SRCIN1Q9C0H9 1055 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 GFM2Q969S9 779 aaKnown RBP4.49□□□□□ -1.69
SYNE1-207ENST00000367255 NSD2O96028 1365 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 NPC1L1Q9UHC9 1359 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 GSDMDP57764 484 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 SYCP1Q15431 976 aa4.49□□□□□ -1.69
SYNE1-207ENST00000367255 OFD1O75665 1012 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 KANK1Q14678 1352 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 MYBBP1AQ9BQG0 1328 aaKnown RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 UVSSAQ2YD98 709 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 TMCO5BA8MYB1 307 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 MPHOSPH10O00566 681 aaKnown RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 SMC4Q9NTJ3 1288 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 STMN4Q9H169 189 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 ZFP91Q96JP5 570 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 SMYD5Q6GMV2 418 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 CASTP20810 708 aaKnown RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 ATP8B1O43520 1251 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 SMAP1Q8IYB5 467 aaPredicted RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 CCDC88BA6NC98 1476 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 RCAN3Q9UKA8 241 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 HSP90AB1P08238 724 aaKnown RBP4.48□□□□□ -1.69
SYNE1-207ENST00000367255 PPARDQ03181 441 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 ZSCAN30Q86W11 494 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 DNAI2Q9GZS0 605 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 EFCAB5A4FU69 1503 aa4.48□□□□□ -1.69
SYNE1-207ENST00000367255 ABCC11Q96J66 1382 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ANKRD18AQ8IVF6 992 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 RABEP2Q9H5N1 569 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 SAFB2Q14151 953 aaKnown RBP eCLIP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ZNF513Q8N8E2 541 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 NAP1L3Q99457 506 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 SLC20A2Q08357 652 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ERICH4A6NGS2 130 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ZNF189O75820 626 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 GBP1P32455 592 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 GABPB1Q06547 395 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 SPATA24Q86W54 205 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 GBP7Q8N8V2 638 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ANKRD36BQ8N2N9 1353 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 SASH1O94885 1247 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 SP100P23497 879 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 UTP14CQ5TAP6 766 aaKnown RBP4.47□□□□□ -1.69
SYNE1-207ENST00000367255 RPGRIP1Q96KN7 1286 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 FRMD3A2A2Y4 597 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 WDR78Q5VTH9 848 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 RUFY2Q8WXA3 655 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 TEX2Q8IWB9 1127 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 MAML3Q96JK9 1138 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 RIMS2Q9UQ26 1411 aa4.47□□□□□ -1.69
SYNE1-207ENST00000367255 ANKRD1Q15327 319 aa4.46□□□□□ -1.69
SYNE1-207ENST00000367255 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.46□□□□□ -1.69
SYNE1-207ENST00000367255 LARP6Q9BRS8 491 aaKnown RBP4.46□□□□□ -1.69
SYNE1-207ENST00000367255 CLCN1P35523 988 aa4.46□□□□□ -1.69
SYNE1-207ENST00000367255 AIMP1Q12904 312 aaKnown RBP4.46□□□□□ -1.69
SYNE1-207ENST00000367255 PPP2R5EQ16537 467 aa4.46□□□□□ -1.69
SYNE1-207ENST00000367255 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.46□□□□□ -1.69
SYNE1-207ENST00000367255 R3HCC1Q9Y3T6 440 aaKnown RBP4.46□□□□□ -1.69
SYNE1-207ENST00000367255 RAI14Q9P0K7 980 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 CLIP2Q9UDT6 1046 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 FAM114A1Q8IWE2 563 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 LEKR1Q6ZMV7 388 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 DACH1Q9UI36 760 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 MYOM3Q5VTT5 1437 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 A0A1B0GUA9 196 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 PSMA5P28066 241 aa4.46□□□□□ -1.7
SYNE1-207ENST00000367255 FAM177A1Q8N128 213 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-207ENST00000367255 CTCFLQ8NI51 663 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-207ENST00000367255 RPAP2Q8IXW5 612 aaPredicted RBP4.46□□□□□ -1.7
SYNE1-207ENST00000367255 MKRN1Q9UHC7 482 aaKnown RBP4.46□□□□□ -1.7
SYNE1-207ENST00000367255 BMP15O95972 392 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 ANAPC15P60006 121 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 NBPF9Q3BBW0 867 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 IL16Q14005 1332 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 PDE4AP27815 886 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 CPLX2Q6PUV4 134 aaKnown RBP4.45□□□□□ -1.7
SYNE1-207ENST00000367255 CARMIL1Q5VZK9 1371 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 APPP05067 770 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 CERS3Q8IU89 383 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 ERLIN2O94905 339 aa4.45□□□□□ -1.7
SYNE1-207ENST00000367255 LUC7L3O95232 432 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms