RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
YBX3-204ENST00000366290 COPS2P61201 443 aa13.19□□□□□ -0.3
YBX3-204ENST00000366290 RTL5Q5HYW3 569 aaPredicted RBP13.19□□□□□ -0.3
YBX3-204ENST00000366290 ACTN4O43707 911 aaKnown RBP13.18□□□□□ -0.3
YBX3-204ENST00000366290 PCDHB3Q9Y5E6 796 aa13.18□□□□□ -0.3
YBX3-204ENST00000366290 NUP160Q12769 1436 aa13.18□□□□□ -0.3
YBX3-204ENST00000366290 SPDYE5A6NIY4 337 aa13.17□□□□□ -0.3
YBX3-204ENST00000366290 UBTFP17480 764 aaKnown RBP13.17□□□□□ -0.3
YBX3-204ENST00000366290 BLOC1S3Q6QNY0 202 aa13.16□□□□□ -0.3
YBX3-204ENST00000366290 KIF27Q86VH2 1401 aa13.15□□□□□ -0.3
YBX3-204ENST00000366290 SNRKQ9NRH2 765 aa13.15□□□□□ -0.3
YBX3-204ENST00000366290 ERCC6L2Q5T890 1561 aa13.15□□□□□ -0.3
YBX3-204ENST00000366290 MTMR2Q13614 643 aa13.14□□□□□ -0.31
YBX3-204ENST00000366290 CEP170Q5SW79 1584 aa13.14□□□□□ -0.31
YBX3-204ENST00000366290 IGF1RP08069 1367 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 ZPR1O75312 459 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 AP1G2O75843 785 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 RGS20O76081 388 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 PUS10Q3MIT2 529 aaKnown RBP13.13□□□□□ -0.31
YBX3-204ENST00000366290 MORN1Q5T089 497 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 NKX2-3Q8TAU0 364 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 CLUAP1Q96AJ1 413 aa13.13□□□□□ -0.31
YBX3-204ENST00000366290 C6orf229H3BNL8 230 aa13.12□□□□□ -0.31
YBX3-204ENST00000366290 CUL7Q14999 1698 aa13.11□□□□□ -0.31
YBX3-204ENST00000366290 SHROOM2Q13796 1616 aa13.1□□□□□ -0.31
YBX3-204ENST00000366290 A6NJR5 290 aa13.1□□□□□ -0.31
YBX3-204ENST00000366290 USP17L8P0C7I0 530 aa13.09□□□□□ -0.31
YBX3-204ENST00000366290 MTMR14Q8NCE2 650 aa13.09□□□□□ -0.31
YBX3-204ENST00000366290 SYMPKQ92797 1274 aaKnown RBP13.09□□□□□ -0.31
YBX3-204ENST00000366290 SLC27A5Q9Y2P5 690 aa13.09□□□□□ -0.31
YBX3-204ENST00000366290 TLL1O43897 1013 aa13.08□□□□□ -0.32
YBX3-204ENST00000366290 PPP1R18Q6NYC8 613 aa13.07□□□□□ -0.32
YBX3-204ENST00000366290 POM121Q96HA1 1249 aa13.07□□□□□ -0.32
YBX3-204ENST00000366290 CFAP99D6REC4 459 aa13.06□□□□□ -0.32
YBX3-204ENST00000366290 RAD21O60216 631 aa13.06□□□□□ -0.32
YBX3-204ENST00000366290 Q3C1V9 767 aa13.06□□□□□ -0.32
YBX3-204ENST00000366290 HELBQ8NG08 1087 aaPredicted RBP13.05□□□□□ -0.32
YBX3-204ENST00000366290 TSC1Q92574 1164 aa13.05□□□□□ -0.32
YBX3-204ENST00000366290 RUSC2Q8N2Y8 1516 aa13.04□□□□□ -0.32
YBX3-204ENST00000366290 SOCS7O14512 581 aa13.04□□□□□ -0.32
YBX3-204ENST00000366290 CTDSPL2Q05D32 466 aa13.04□□□□□ -0.32
YBX3-204ENST00000366290 COG6Q9Y2V7 657 aa13.04□□□□□ -0.32
YBX3-204ENST00000366290 RETREG3Q86VR2 466 aa13.03□□□□□ -0.32
YBX3-204ENST00000366290 PRR7Q8TB68 274 aa13.03□□□□□ -0.32
YBX3-204ENST00000366290 RNF19BQ6ZMZ0 732 aa13.02□□□□□ -0.33
YBX3-204ENST00000366290 SCUBE3Q8IX30 993 aa13.02□□□□□ -0.33
YBX3-204ENST00000366290 CARMIL1Q5VZK9 1371 aa13.02□□□□□ -0.33
YBX3-204ENST00000366290 APBB1O00213 710 aa13.01□□□□□ -0.33
YBX3-204ENST00000366290 NR1I2O75469 434 aa13.01□□□□□ -0.33
YBX3-204ENST00000366290 PROSER2Q86WR7 435 aaPredicted RBP13.01□□□□□ -0.33
YBX3-204ENST00000366290 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.01□□□□□ -0.33
YBX3-204ENST00000366290 KIAA0586Q9BVV6 1533 aa13.01□□□□□ -0.33
YBX3-204ENST00000366290 TRAK2O60296 914 aa13□□□□□ -0.33
YBX3-204ENST00000366290 SALL2Q9Y467 1007 aaPredicted RBP12.99□□□□□ -0.33
YBX3-204ENST00000366290 BRICD5Q6PL45 260 aa12.98□□□□□ -0.33
YBX3-204ENST00000366290 HMX1Q9NP08 348 aaPredicted RBP12.98□□□□□ -0.33
YBX3-204ENST00000366290 PRG4Q92954 1404 aaPredicted RBP12.97□□□□□ -0.33
YBX3-204ENST00000366290 ADH1BP00325 375 aa12.97□□□□□ -0.33
YBX3-204ENST00000366290 FNBP4Q8N3X1 1017 aaPredicted RBP12.97□□□□□ -0.33
YBX3-204ENST00000366290 LRRN4Q8WUT4 740 aa12.97□□□□□ -0.33
YBX3-204ENST00000366290 GJD4Q96KN9 370 aaPredicted RBP12.97□□□□□ -0.33
YBX3-204ENST00000366290 GDPD2Q9HCC8 539 aa12.97□□□□□ -0.33
YBX3-204ENST00000366290 FMNL1O95466 1100 aaPredicted RBP12.96□□□□□ -0.33
YBX3-204ENST00000366290 THAP11Q96EK4 314 aa12.96□□□□□ -0.33
YBX3-204ENST00000366290 USB1Q9BQ65 265 aaKnown RBP12.96□□□□□ -0.33
YBX3-204ENST00000366290 PRM3Q9NNZ6 103 aa12.96□□□□□ -0.33
YBX3-204ENST00000366290 ARID3CA6NKF2 412 aa12.95□□□□□ -0.34
YBX3-204ENST00000366290 DESI1Q6ICB0 168 aa12.95□□□□□ -0.34
YBX3-204ENST00000366290 TBC1D2BQ9UPU7 963 aa12.95□□□□□ -0.34
YBX3-204ENST00000366290 KIF13AQ9H1H9 1805 aa12.95□□□□□ -0.34
YBX3-204ENST00000366290 RAPGEF2Q9Y4G8 1499 aa12.94□□□□□ -0.34
YBX3-204ENST00000366290 RNF223E7ERA6 249 aa12.94□□□□□ -0.34
YBX3-204ENST00000366290 S1PR4O95977 384 aa12.94□□□□□ -0.34
YBX3-204ENST00000366290 C1orf115Q9H7X2 142 aa12.94□□□□□ -0.34
YBX3-204ENST00000366290 PER1O15534 1290 aaPredicted RBP12.93□□□□□ -0.34
YBX3-204ENST00000366290 GGCXP38435 758 aa12.93□□□□□ -0.34
YBX3-204ENST00000366290 TRIM34Q9BYJ4 488 aa12.93□□□□□ -0.34
YBX3-204ENST00000366290 ABL2P42684 1182 aa12.92□□□□□ -0.34
YBX3-204ENST00000366290 SPSB2Q99619 263 aa12.92□□□□□ -0.34
YBX3-204ENST00000366290 NDUFB9Q9Y6M9 179 aa12.92□□□□□ -0.34
YBX3-204ENST00000366290 IQGAP2Q13576 1575 aa12.91□□□□□ -0.34
YBX3-204ENST00000366290 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
YBX3-204ENST00000366290 PRXQ9BXM0 1461 aa12.91□□□□□ -0.34
YBX3-204ENST00000366290 LYPD8Q6UX82 237 aa12.9□□□□□ -0.34
YBX3-204ENST00000366290 PPEF1O14829 653 aaPredicted RBP12.89□□□□□ -0.35
YBX3-204ENST00000366290 EMID1Q96A84 441 aaPredicted RBP12.89□□□□□ -0.35
YBX3-204ENST00000366290 SLC6A16Q9GZN6 736 aa12.89□□□□□ -0.35
YBX3-204ENST00000366290 WWC1Q8IX03 1113 aa12.88□□□□□ -0.35
YBX3-204ENST00000366290 EPS8L1Q8TE68 723 aa12.88□□□□□ -0.35
YBX3-204ENST00000366290 ZNF777Q9ULD5 760 aaPredicted RBP12.88□□□□□ -0.35
YBX3-204ENST00000366290 ZNF330Q9Y3S2 320 aaPredicted RBP12.88□□□□□ -0.35
YBX3-204ENST00000366290 V9GY48 417 aaPredicted RBP12.88□□□□□ -0.35
YBX3-204ENST00000366290 JUNDP17535 347 aa12.87□□□□□ -0.35
YBX3-204ENST00000366290 ANKLE1Q8NAG6 615 aa12.87□□□□□ -0.35
YBX3-204ENST00000366290 UGGT2Q9NYU1 1516 aa12.87□□□□□ -0.35
YBX3-204ENST00000366290 GPR37L1O60883 481 aa12.86□□□□□ -0.35
YBX3-204ENST00000366290 NR6A1Q15406 480 aa12.86□□□□□ -0.35
YBX3-204ENST00000366290 MSS51Q4VC12 460 aa12.86□□□□□ -0.35
YBX3-204ENST00000366290 FAM160A2Q8N612 972 aaPredicted RBP12.86□□□□□ -0.35
YBX3-204ENST00000366290 EEA1Q15075 1411 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 343.3 ms