RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 SLC4A2P04920 1241 aa16.9■□□□□ 0.3
COL6A1-201ENST00000361866 PRAG1Q86YV5 1406 aa16.9■□□□□ 0.3
COL6A1-201ENST00000361866 TPM2P07951 284 aa16.9■□□□□ 0.3
COL6A1-201ENST00000361866 ATP6V1DQ9Y5K8 247 aa16.9■□□□□ 0.3
COL6A1-201ENST00000361866 CT47B1P0C2W7 299 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-201ENST00000361866 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
COL6A1-201ENST00000361866 ZNF330Q9Y3S2 320 aaPredicted RBP16.9■□□□□ 0.3
COL6A1-201ENST00000361866 ISY1Q9ULR0 285 aaKnown RBP16.89■□□□□ 0.29
COL6A1-201ENST00000361866 TCOF1Q13428 1488 aaKnown RBP16.89■□□□□ 0.29
COL6A1-201ENST00000361866 XPCQ01831 940 aaPredicted RBP16.89■□□□□ 0.29
COL6A1-201ENST00000361866 SULT6B1Q6IMI4 303 aa16.89■□□□□ 0.29
COL6A1-201ENST00000361866 ZSCAN30Q86W11 494 aa16.89■□□□□ 0.29
COL6A1-201ENST00000361866 FBXW7Q969H0 707 aa16.88■□□□□ 0.29
COL6A1-201ENST00000361866 GPATCH3Q96I76 525 aa16.88■□□□□ 0.29
COL6A1-201ENST00000361866 CARD14Q9BXL6 1004 aa16.88■□□□□ 0.29
COL6A1-201ENST00000361866 UPF3BQ9BZI7 483 aaKnown RBP16.88■□□□□ 0.29
COL6A1-201ENST00000361866 RRP9O43818 475 aaKnown RBP16.88■□□□□ 0.29
COL6A1-201ENST00000361866 NUP153P49790 1475 aaKnown RBP16.87■□□□□ 0.29
COL6A1-201ENST00000361866 MAP4K4O95819 1239 aaPredicted RBP16.87■□□□□ 0.29
COL6A1-201ENST00000361866 TBC1D9Q6ZT07 1266 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 CDK19Q9BWU1 502 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 CCDC39Q9UFE4 941 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 FOSBP53539 338 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 NUTM2GQ5VZR2 741 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 MIS18AQ9NYP9 233 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 EXOC6BQ9Y2D4 811 aa16.87■□□□□ 0.29
COL6A1-201ENST00000361866 SURF6O75683 361 aaKnown RBP16.86■□□□□ 0.29
COL6A1-201ENST00000361866 MBD3O95983 291 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 EID1Q9Y6B2 187 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 UQCRHLA0A096LP55 91 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 UQCRHP07919 91 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 SPC24Q8NBT2 197 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
COL6A1-201ENST00000361866 H3BQV1 296 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 IFFO2Q5TF58 517 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 ERC2O15083 957 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 GNL2Q13823 731 aaKnown RBP16.85■□□□□ 0.29
COL6A1-201ENST00000361866 BICD2Q8TD16 824 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 BECN2A8MW95 431 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 TSPY26PQ9H489 355 aa16.85■□□□□ 0.29
COL6A1-201ENST00000361866 C9orf78Q9NZ63 289 aaPredicted RBP16.85■□□□□ 0.29
COL6A1-201ENST00000361866 ZKSCAN1P17029 563 aaPredicted RBP16.84■□□□□ 0.29
COL6A1-201ENST00000361866 IL1RAPL2Q9NP60 686 aa16.84■□□□□ 0.29
COL6A1-201ENST00000361866 GOLGA6L19H0YKK7 550 aa16.84■□□□□ 0.29
COL6A1-201ENST00000361866 HTATSF1O43719 755 aaKnown RBP16.84■□□□□ 0.29
COL6A1-201ENST00000361866 GDPD2Q9HCC8 539 aa16.84■□□□□ 0.29
COL6A1-201ENST00000361866 IFT57Q9NWB7 429 aa16.83■□□□□ 0.29
COL6A1-201ENST00000361866 RBM27Q9P2N5 1060 aaKnown RBP16.83■□□□□ 0.29
COL6A1-201ENST00000361866 FAM184AQ8NB25 1140 aa16.83■□□□□ 0.28
COL6A1-201ENST00000361866 KDM6BO15054 1643 aa16.83■□□□□ 0.28
COL6A1-201ENST00000361866 FCHSD2O94868 740 aa16.82■□□□□ 0.28
COL6A1-201ENST00000361866 BAG4O95429 457 aaKnown RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 CLCN1P35523 988 aa16.82■□□□□ 0.28
COL6A1-201ENST00000361866 UBTFL1P0CB47 393 aaPredicted RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 SF3A1Q15459 793 aaKnown RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 SCAF11Q99590 1463 aaKnown RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 IFIT2P09913 472 aaKnown RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 TXNDC2Q86VQ3 553 aa16.82■□□□□ 0.28
COL6A1-201ENST00000361866 CWC22Q9HCG8 908 aaKnown RBP16.82■□□□□ 0.28
COL6A1-201ENST00000361866 MAGI3Q5TCQ9 1506 aa16.82■□□□□ 0.28
COL6A1-201ENST00000361866 TEFQ10587 303 aa16.81■□□□□ 0.28
COL6A1-201ENST00000361866 NFE2L2Q16236 605 aa16.81■□□□□ 0.28
COL6A1-201ENST00000361866 TSHZ3Q63HK5 1081 aa16.81■□□□□ 0.28
COL6A1-201ENST00000361866 RAPGEF3O95398 923 aa16.81■□□□□ 0.28
COL6A1-201ENST00000361866 LARP6Q9BRS8 491 aaKnown RBP16.81■□□□□ 0.28
COL6A1-201ENST00000361866 EMILIN1Q9Y6C2 1016 aa16.81■□□□□ 0.28
COL6A1-201ENST00000361866 MCM10Q7L590 875 aa16.8■□□□□ 0.28
COL6A1-201ENST00000361866 BMP2KLQ5H9B9 411 aa16.8■□□□□ 0.28
COL6A1-201ENST00000361866 ZNF771Q7L3S4 317 aaPredicted RBP16.8■□□□□ 0.28
COL6A1-201ENST00000361866 RUFY2Q8WXA3 655 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 FAM83GA6ND36 823 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 F6X3S4 739 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 GNAI2P04899 355 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 WAPLQ7Z5K2 1190 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 ZMYND15Q9H091 742 aa16.79■□□□□ 0.28
COL6A1-201ENST00000361866 DDX54Q8TDD1 881 aaKnown RBP16.78■□□□□ 0.28
COL6A1-201ENST00000361866 GORABQ5T7V8 394 aa16.78■□□□□ 0.28
COL6A1-201ENST00000361866 GAS2L2Q8NHY3 880 aa16.78■□□□□ 0.28
COL6A1-201ENST00000361866 PRDM10Q9NQV6 1147 aa16.78■□□□□ 0.28
COL6A1-201ENST00000361866 HDAC1Q13547 482 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-201ENST00000361866 C16orf71Q8IYS4 520 aaPredicted RBP16.77■□□□□ 0.27
COL6A1-201ENST00000361866 GNAI3P08754 354 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 NUCB1Q02818 461 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 MAP7D2Q96T17 732 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 LRRCC1Q9C099 1032 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 CSB-PGBD3P0DP91 1061 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 AIMP1Q12904 312 aaKnown RBP16.76■□□□□ 0.27
COL6A1-201ENST00000361866 TRIM5Q9C035 493 aa16.76■□□□□ 0.27
COL6A1-201ENST00000361866 NPHP1O15259 732 aa16.75■□□□□ 0.27
COL6A1-201ENST00000361866 MCM2P49736 904 aa16.75■□□□□ 0.27
COL6A1-201ENST00000361866 ASXL1Q8IXJ9 1541 aa16.75■□□□□ 0.27
COL6A1-201ENST00000361866 CEBPZQ03701 1054 aaKnown RBP16.75■□□□□ 0.27
COL6A1-201ENST00000361866 ALDH1L2Q3SY69 923 aa16.75■□□□□ 0.27
COL6A1-201ENST00000361866 RPAP2Q8IXW5 612 aaPredicted RBP16.75■□□□□ 0.27
COL6A1-201ENST00000361866 SASS6Q6UVJ0 657 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.74■□□□□ 0.27
COL6A1-201ENST00000361866 NME9Q86XW9 330 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 CTTNBP2Q8WZ74 1663 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 ATP10BO94823 1461 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 KLHL40Q2TBA0 621 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms