RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PIP4K2AP48426 406 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-203ENST00000361654 CCDC57Q2TAC2 916 aa13.12□□□□□ -0.31
CLIP1-203ENST00000361654 PRAM1Q96QH2 718 aa13.12□□□□□ -0.31
CLIP1-203ENST00000361654 MYO6Q9UM54 1294 aa13.12□□□□□ -0.31
CLIP1-203ENST00000361654 GSE1Q14687 1217 aa13.12□□□□□ -0.31
CLIP1-203ENST00000361654 PAXIP1Q6ZW49 1069 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-203ENST00000361654 PRKRIP1Q9H875 184 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-203ENST00000361654 RRP1P56182 461 aaKnown RBP13.11□□□□□ -0.31
CLIP1-203ENST00000361654 ANKRD50Q9ULJ7 1429 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 TRIM21P19474 475 aaKnown RBP13.11□□□□□ -0.31
CLIP1-203ENST00000361654 HDGFL1Q5TGJ6 251 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 STARD3NLO95772 234 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 FOSBP53539 338 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 NUCB2P80303 420 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 PDCL3Q9H2J4 239 aa13.11□□□□□ -0.31
CLIP1-203ENST00000361654 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-203ENST00000361654 RUFY1Q96T51 708 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 IL27Q8NEV9 243 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 DNAI2Q9GZS0 605 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 IGHMBP2P38935 993 aaKnown RBP13.1□□□□□ -0.31
CLIP1-203ENST00000361654 CRBNQ96SW2 442 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 PRG4Q92954 1404 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-203ENST00000361654 TRIM22Q8IYM9 498 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 SDF4Q9BRK5 362 aa13.1□□□□□ -0.31
CLIP1-203ENST00000361654 MAGEC2Q9UBF1 373 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-203ENST00000361654 GRIN2BQ13224 1484 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 FGD5Q6ZNL6 1462 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 PLEKHH2Q8IVE3 1493 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 ZPR1O75312 459 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 DESP17661 470 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 KCNH5Q8NCM2 988 aa13.09□□□□□ -0.31
CLIP1-203ENST00000361654 CDC45O75419 566 aa13.08□□□□□ -0.31
CLIP1-203ENST00000361654 AQRO60306 1485 aaKnown RBP eCLIP13.08□□□□□ -0.327e-7■■■■■ 48.1
CLIP1-203ENST00000361654 AK7Q96M32 723 aa13.08□□□□□ -0.32
CLIP1-203ENST00000361654 CDK19Q9BWU1 502 aa13.08□□□□□ -0.32
CLIP1-203ENST00000361654 PRKAR2BP31323 418 aa13.08□□□□□ -0.32
CLIP1-203ENST00000361654 CUX1P39880 1505 aa13.08□□□□□ -0.32
CLIP1-203ENST00000361654 ATP2B1P20020 1258 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 PDCP20941 246 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 CHMP5Q9NZZ3 219 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 FILIP1LQ4L180 1135 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 SLC26A8Q96RN1 970 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 ACBD3Q9H3P7 528 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 GNAI2P04899 355 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 VSIG10Q8N0Z9 540 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 ARID3AQ99856 593 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 ZNF287Q9HBT7 754 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 CFAP70Q5T0N1 1121 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 JMYQ8N9B5 988 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 LNPKQ9C0E8 428 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 BICDL1Q6ZP65 573 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 ZNF592Q92610 1267 aa13.07□□□□□ -0.32
CLIP1-203ENST00000361654 NGLY1Q96IV0 654 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 CEP126Q9P2H0 1117 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 RTEL1-TNFRSF6BF6WH68 1400 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 TTLL12Q14166 644 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-203ENST00000361654 PDE4AP27815 886 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 SRCIN1Q9C0H9 1055 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 SCAPERQ9BY12 1400 aa13.06□□□□□ -0.32
CLIP1-203ENST00000361654 BMP2KQ9NSY1 1161 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-203ENST00000361654 ZBED9Q6R2W3 1325 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 SULT6B1Q6IMI4 303 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 TMEM87AQ8NBN3 555 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 RPGRIP1LQ68CZ1 1315 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 CCT4P50991 539 aaKnown RBP13.05□□□□□ -0.32
CLIP1-203ENST00000361654 TWISTNBQ3B726 338 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-203ENST00000361654 ZNF396Q96N95 335 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-203ENST00000361654 CCDC69A6NI79 296 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 ZNF76P36508 570 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 RAI14Q9P0K7 980 aa13.05□□□□□ -0.32
CLIP1-203ENST00000361654 PATL2C9JE40 543 aaKnown RBP13.04□□□□□ -0.32
CLIP1-203ENST00000361654 STIM1Q13586 685 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 EXOC6Q8TAG9 804 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 SMARCE1Q969G3 411 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 RAD54L2Q9Y4B4 1467 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 ZNF644Q9H582 1327 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-203ENST00000361654 HSP90AA2PQ14568 343 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-203ENST00000361654 TNIP1Q15025 636 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 LUC7LQ9NQ29 371 aaKnown RBP13.04□□□□□ -0.32
CLIP1-203ENST00000361654 NOL7Q9UMY1 257 aaKnown RBP13.04□□□□□ -0.32
CLIP1-203ENST00000361654 PRDM2Q13029 1718 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 IGF1RP08069 1367 aa13.04□□□□□ -0.32
CLIP1-203ENST00000361654 TMOD3Q9NYL9 352 aa13.03□□□□□ -0.32
CLIP1-203ENST00000361654 WIZO95785 1651 aa13.03□□□□□ -0.32
CLIP1-203ENST00000361654 NEBLO76041 1014 aa13.03□□□□□ -0.32
CLIP1-203ENST00000361654 MYL6BP14649 208 aa13.03□□□□□ -0.32
CLIP1-203ENST00000361654 ZHX3Q9H4I2 956 aa13.03□□□□□ -0.32
CLIP1-203ENST00000361654 CABP1Q9NZU7 370 aa13.02□□□□□ -0.32
CLIP1-203ENST00000361654 CTNNA3Q9UI47 895 aa13.02□□□□□ -0.32
CLIP1-203ENST00000361654 KIF7Q2M1P5 1343 aa13.02□□□□□ -0.32
CLIP1-203ENST00000361654 KINO60870 393 aaKnown RBP13.02□□□□□ -0.32
CLIP1-203ENST00000361654 KDM4AO75164 1064 aa13.02□□□□□ -0.32
CLIP1-203ENST00000361654 ZC3H6P61129 1189 aaKnown RBP13.02□□□□□ -0.32
CLIP1-203ENST00000361654 LRP2BPQ9P2M1 347 aa13.02□□□□□ -0.32
CLIP1-203ENST00000361654 HFM1A2PYH4 1435 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 MCM2P49736 904 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 UBAC1Q9BSL1 405 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 CNTLNQ9NXG0 1405 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 TCP11L2Q8N4U5 519 aa13.02□□□□□ -0.33
CLIP1-203ENST00000361654 CRACR2BQ8N4Y2 399 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms