RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 TBC1D2BQ9UPU7 963 aa16.35■□□□□ 0.21
LDB3-202ENST00000361373 DDX49Q9Y6V7 483 aaKnown RBP16.35■□□□□ 0.21
LDB3-202ENST00000361373 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
LDB3-202ENST00000361373 RBM42Q9BTD8 480 aaKnown RBP16.35■□□□□ 0.21
LDB3-202ENST00000361373 SURF6O75683 361 aaKnown RBP16.34■□□□□ 0.21
LDB3-202ENST00000361373 FANCAO15360 1455 aa16.34■□□□□ 0.21
LDB3-202ENST00000361373 MCTP1Q6DN14 999 aa16.34■□□□□ 0.21
LDB3-202ENST00000361373 NUCB2P80303 420 aa16.33■□□□□ 0.21
LDB3-202ENST00000361373 DHX29Q7Z478 1369 aaKnown RBP16.33■□□□□ 0.21
LDB3-202ENST00000361373 PSMA5P28066 241 aa16.33■□□□□ 0.2
LDB3-202ENST00000361373 CHMP5Q9NZZ3 219 aa16.33■□□□□ 0.2
LDB3-202ENST00000361373 NFXL1Q6ZNB6 911 aa16.33■□□□□ 0.2
LDB3-202ENST00000361373 HOOK1Q9UJC3 728 aaKnown RBP16.33■□□□□ 0.2
LDB3-202ENST00000361373 TPD52L1Q16890 204 aaPredicted RBP16.32■□□□□ 0.2
LDB3-202ENST00000361373 WASHC4Q2M389 1173 aa16.32■□□□□ 0.2
LDB3-202ENST00000361373 SAFBQ15424 915 aaKnown RBP eCLIP16.32■□□□□ 0.2
LDB3-202ENST00000361373 TPM2P07951 284 aa16.32■□□□□ 0.2
LDB3-202ENST00000361373 GOLGA6L19H0YKK7 550 aa16.32■□□□□ 0.2
LDB3-202ENST00000361373 SLC4A2P04920 1241 aa16.32■□□□□ 0.2
LDB3-202ENST00000361373 TPM3P06753 285 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 TCEAL9Q9UHQ7 104 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 BECN2A8MW95 431 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 TSR1Q2NL82 804 aaKnown RBP16.31■□□□□ 0.2
LDB3-202ENST00000361373 SRCIN1Q9C0H9 1055 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 SMC3Q9UQE7 1217 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 NSD3Q9BZ95 1437 aa16.31■□□□□ 0.2
LDB3-202ENST00000361373 DHX16O60231 1041 aaKnown RBP16.3■□□□□ 0.2
LDB3-202ENST00000361373 FBXW7Q969H0 707 aa16.3■□□□□ 0.2
LDB3-202ENST00000361373 FOXD4L5Q5VV16 416 aaPredicted RBP16.3■□□□□ 0.2
LDB3-202ENST00000361373 FOXD4L4Q8WXT5 416 aaPredicted RBP16.3■□□□□ 0.2
LDB3-202ENST00000361373 CDCA7LQ96GN5 454 aa16.3■□□□□ 0.2
LDB3-202ENST00000361373 C22orf23Q9BZE7 217 aa16.3■□□□□ 0.2
LDB3-202ENST00000361373 TPM1P09493 284 aa16.3■□□□□ 0.2
LDB3-202ENST00000361373 FSD1Q9BTV5 496 aa16.3■□□□□ 0.2
LDB3-202ENST00000361373 GNL3LQ9NVN8 582 aaKnown RBP16.3■□□□□ 0.2
LDB3-202ENST00000361373 NFE2L2Q16236 605 aa16.29■□□□□ 0.2
LDB3-202ENST00000361373 CEP89Q96ST8 783 aa16.29■□□□□ 0.2
LDB3-202ENST00000361373 IDI1Q13907 227 aa16.29■□□□□ 0.2
LDB3-202ENST00000361373 THOC2Q8NI27 1593 aaKnown RBP16.29■□□□□ 0.2
LDB3-202ENST00000361373 SART3Q15020 963 aaKnown RBP16.28■□□□□ 0.2
LDB3-202ENST00000361373 SF3B2Q13435 895 aaKnown RBP16.28■□□□□ 0.2
LDB3-202ENST00000361373 ATF7IPQ6VMQ6 1270 aa16.28■□□□□ 0.2
LDB3-202ENST00000361373 DDX54Q8TDD1 881 aaKnown RBP16.28■□□□□ 0.2
LDB3-202ENST00000361373 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
LDB3-202ENST00000361373 MCM2P49736 904 aa16.27■□□□□ 0.2
LDB3-202ENST00000361373 CREBRFQ8IUR6 639 aa16.27■□□□□ 0.2
LDB3-202ENST00000361373 XBP1P17861 261 aa16.27■□□□□ 0.2
LDB3-202ENST00000361373 RAD21O60216 631 aa16.27■□□□□ 0.19
LDB3-202ENST00000361373 ANKRD20A12PQ8NF67 263 aa16.27■□□□□ 0.19
LDB3-202ENST00000361373 CCDC158Q5M9N0 1113 aa16.27■□□□□ 0.19
LDB3-202ENST00000361373 NOB1Q9ULX3 412 aaKnown RBP16.27■□□□□ 0.19
LDB3-202ENST00000361373 FAM135AQ9P2D6 1515 aa16.27■□□□□ 0.19
LDB3-202ENST00000361373 FANCIQ9NVI1 1328 aa16.26■□□□□ 0.19
LDB3-202ENST00000361373 TEX14Q8IWB6 1497 aa16.26■□□□□ 0.19
LDB3-202ENST00000361373 CCDC27Q2M243 656 aa16.26■□□□□ 0.19
LDB3-202ENST00000361373 ABCC11Q96J66 1382 aa16.26■□□□□ 0.19
LDB3-202ENST00000361373 RTN4Q9NQC3 1192 aaKnown RBP16.26■□□□□ 0.19
LDB3-202ENST00000361373 SLC3A2P08195 630 aaKnown RBP16.26■□□□□ 0.19
LDB3-202ENST00000361373 AMOTQ4VCS5 1084 aa16.26■□□□□ 0.19
LDB3-202ENST00000361373 TSR2Q969E8 191 aaKnown RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 PHF8Q9UPP1 1060 aa16.25■□□□□ 0.19
LDB3-202ENST00000361373 GNAT3A8MTJ3 354 aa16.25■□□□□ 0.19
LDB3-202ENST00000361373 WASLO00401 505 aaPredicted RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 RRS1Q15050 365 aaKnown RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 AMOTL2Q9Y2J4 779 aa16.25■□□□□ 0.19
LDB3-202ENST00000361373 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 NOC3LQ8WTT2 800 aaKnown RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 BRMS1Q9HCU9 246 aa16.25■□□□□ 0.19
LDB3-202ENST00000361373 LRPPRCP42704 1394 aaKnown RBP16.25■□□□□ 0.19
LDB3-202ENST00000361373 CNNM1Q9NRU3 951 aa16.25■□□□□ 0.19
LDB3-202ENST00000361373 NUTM2BA6NNL0 878 aaPredicted RBP16.24■□□□□ 0.19
LDB3-202ENST00000361373 NUTM2EB1AL46 878 aaPredicted RBP16.24■□□□□ 0.19
LDB3-202ENST00000361373 NUTM2AQ8IVF1 878 aaPredicted RBP16.24■□□□□ 0.19
LDB3-202ENST00000361373 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.19
LDB3-202ENST00000361373 NSD2O96028 1365 aa16.24■□□□□ 0.19
LDB3-202ENST00000361373 PLCH2O75038 1416 aa16.24■□□□□ 0.19
LDB3-202ENST00000361373 BTBD11A6QL63 1104 aa16.24■□□□□ 0.19
LDB3-202ENST00000361373 WAPLQ7Z5K2 1190 aa16.24■□□□□ 0.19
LDB3-202ENST00000361373 TMPOP42166 694 aaKnown RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 C14orf93Q9H972 538 aaKnown RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 PES1O00541 588 aaKnown RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 VPS37CA5D8V6 355 aaPredicted RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 BICD2Q8TD16 824 aa16.23■□□□□ 0.19
LDB3-202ENST00000361373 PHF23Q9BUL5 403 aaPredicted RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 GPATCH8Q9UKJ3 1502 aaKnown RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 SCAF11Q99590 1463 aaKnown RBP16.23■□□□□ 0.19
LDB3-202ENST00000361373 PDCP20941 246 aa16.22■□□□□ 0.19
LDB3-202ENST00000361373 LRRCC1Q9C099 1032 aa16.22■□□□□ 0.19
LDB3-202ENST00000361373 STARD3NLO95772 234 aa16.22■□□□□ 0.19
LDB3-202ENST00000361373 MVPQ14764 893 aaKnown RBP16.22■□□□□ 0.19
LDB3-202ENST00000361373 RPAP2Q8IXW5 612 aaPredicted RBP16.22■□□□□ 0.19
LDB3-202ENST00000361373 ZC3H6P61129 1189 aaKnown RBP16.21■□□□□ 0.19
LDB3-202ENST00000361373 FBXO31Q5XUX0 539 aaPredicted RBP16.21■□□□□ 0.19
LDB3-202ENST00000361373 CCDC73Q6ZRK6 1079 aa16.21■□□□□ 0.19
LDB3-202ENST00000361373 ADGRF5Q8IZF2 1346 aa16.21■□□□□ 0.19
LDB3-202ENST00000361373 RPRD2Q5VT52 1461 aaKnown RBP16.21■□□□□ 0.19
LDB3-202ENST00000361373 DCAF8L1A6NGE4 600 aa16.21■□□□□ 0.19
LDB3-202ENST00000361373 PDZRN3Q9UPQ7 1066 aa16.21■□□□□ 0.19
LDB3-202ENST00000361373 WDR97A6NE52 1622 aa16.21■□□□□ 0.19
LDB3-202ENST00000361373 CCDC57Q2TAC2 916 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms