RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 XIRP1Q702N8 1843 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-201ENST00000360718 ZNF335Q9H4Z2 1342 aaPredicted RBP17.59■□□□□ 0.41
SQSTM1-201ENST00000360718 RBM19Q9Y4C8 960 aaKnown RBP17.58■□□□□ 0.4
SQSTM1-201ENST00000360718 ZRANB1Q9UGI0 708 aa17.57■□□□□ 0.4
SQSTM1-201ENST00000360718 USP6P35125 1406 aa17.57■□□□□ 0.4
SQSTM1-201ENST00000360718 POLR3AO14802 1390 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-201ENST00000360718 NME9Q86XW9 330 aa17.56■□□□□ 0.4
SQSTM1-201ENST00000360718 ZBED9Q6R2W3 1325 aa17.55■□□□□ 0.4
SQSTM1-201ENST00000360718 ZNF692Q9BU19 519 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-201ENST00000360718 SSH2Q76I76 1423 aa17.55■□□□□ 0.4
SQSTM1-201ENST00000360718 C19orf44Q9H6X5 657 aa17.54■□□□□ 0.4
SQSTM1-201ENST00000360718 LRRC7Q96NW7 1537 aa17.53■□□□□ 0.4
SQSTM1-201ENST00000360718 TTC21BQ7Z4L5 1316 aa17.53■□□□□ 0.4
SQSTM1-201ENST00000360718 NGDNQ8NEJ9 315 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-201ENST00000360718 FBLN1P23142 703 aa17.52■□□□□ 0.4
SQSTM1-201ENST00000360718 PPP4R2Q9NY27 417 aa17.52■□□□□ 0.4
SQSTM1-201ENST00000360718 ORAI2Q96SN7 254 aa17.51■□□□□ 0.39
SQSTM1-201ENST00000360718 PHF8Q9UPP1 1060 aa17.51■□□□□ 0.39
SQSTM1-201ENST00000360718 NCOA3Q9Y6Q9 1424 aa17.51■□□□□ 0.39
SQSTM1-201ENST00000360718 ESCO1Q5FWF5 840 aa17.51■□□□□ 0.39
SQSTM1-201ENST00000360718 MTHFSP49914 203 aa17.5■□□□□ 0.39
SQSTM1-201ENST00000360718 C1orf167Q5SNV9 1468 aa17.49■□□□□ 0.39
SQSTM1-201ENST00000360718 MST1RQ04912 1400 aa17.49■□□□□ 0.39
SQSTM1-201ENST00000360718 SENP3-EIF4A1A0A087X0R7 540 aa17.49■□□□□ 0.39
SQSTM1-201ENST00000360718 PIK3C2AO00443 1686 aa17.48■□□□□ 0.39
SQSTM1-201ENST00000360718 DCCP43146 1447 aa17.48■□□□□ 0.39
SQSTM1-201ENST00000360718 SHPRHQ149N8 1683 aa17.48■□□□□ 0.39
SQSTM1-201ENST00000360718 MAP2P11137 1827 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-201ENST00000360718 OVOS2A0A0J9YW53 1432 aa17.47■□□□□ 0.39
SQSTM1-201ENST00000360718 OVOS2Q6IE36 1432 aa17.47■□□□□ 0.39
SQSTM1-201ENST00000360718 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
SQSTM1-201ENST00000360718 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
SQSTM1-201ENST00000360718 WDR43Q15061 677 aaKnown RBP eCLIP17.46■□□□□ 0.39
SQSTM1-201ENST00000360718 ATF3P18847 181 aa17.46■□□□□ 0.39
SQSTM1-201ENST00000360718 ADAMTS8Q9UP79 889 aa17.46■□□□□ 0.39
SQSTM1-201ENST00000360718 MARF1Q9Y4F3 1742 aaKnown RBP17.46■□□□□ 0.38
SQSTM1-201ENST00000360718 COG3Q96JB2 828 aa17.45■□□□□ 0.38
SQSTM1-201ENST00000360718 MSH6P52701 1360 aa17.45■□□□□ 0.38
SQSTM1-201ENST00000360718 FOXO3O43524 673 aa17.44■□□□□ 0.38
SQSTM1-201ENST00000360718 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
SQSTM1-201ENST00000360718 TTC21AQ8NDW8 1320 aa17.44■□□□□ 0.38
SQSTM1-201ENST00000360718 COL3A1P02461 1466 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-201ENST00000360718 XPCQ01831 940 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-201ENST00000360718 POLKQ9UBT6 870 aa17.43■□□□□ 0.38
SQSTM1-201ENST00000360718 INSRP06213 1382 aa17.42■□□□□ 0.38
SQSTM1-201ENST00000360718 CADPS2Q86UW7 1296 aa17.42■□□□□ 0.38
SQSTM1-201ENST00000360718 KIF1AQ12756 1690 aa17.42■□□□□ 0.38
SQSTM1-201ENST00000360718 BLMP54132 1417 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-201ENST00000360718 NUTM2GQ5VZR2 741 aa17.41■□□□□ 0.38
SQSTM1-201ENST00000360718 EMILIN1Q9Y6C2 1016 aa17.41■□□□□ 0.38
SQSTM1-201ENST00000360718 AATKQ6ZMQ8 1374 aa17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 USP31Q70CQ4 1352 aa17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 TRPM3Q9HCF6 1732 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 PAK3O75914 559 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 PSME1Q06323 249 aa17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 DDX17Q92841 729 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 USP54Q70EL1 1684 aa17.4■□□□□ 0.38
SQSTM1-201ENST00000360718 PNPLA6Q8IY17 1366 aa17.39■□□□□ 0.38
SQSTM1-201ENST00000360718 FANCIQ9NVI1 1328 aa17.39■□□□□ 0.37
SQSTM1-201ENST00000360718 SMG6Q86US8 1419 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-201ENST00000360718 LTBP4Q8N2S1 1624 aa17.38■□□□□ 0.37
SQSTM1-201ENST00000360718 PPM1GO15355 546 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-201ENST00000360718 SOX12O15370 315 aa17.38■□□□□ 0.37
SQSTM1-201ENST00000360718 NLRP6P59044 892 aa17.38■□□□□ 0.37
SQSTM1-201ENST00000360718 ABTB2Q8N961 1025 aa17.38■□□□□ 0.37
SQSTM1-201ENST00000360718 PEAK1Q9H792 1746 aa17.37■□□□□ 0.37
SQSTM1-201ENST00000360718 KRT28Q7Z3Y7 464 aa17.36■□□□□ 0.37
SQSTM1-201ENST00000360718 CCDC146Q8IYE0 955 aa17.36■□□□□ 0.37
SQSTM1-201ENST00000360718 CDK12Q9NYV4 1490 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-201ENST00000360718 BRINP3Q76B58 766 aa17.35■□□□□ 0.37
SQSTM1-201ENST00000360718 NUDCQ9Y266 331 aa17.35■□□□□ 0.37
SQSTM1-201ENST00000360718 SLAIN2Q9P270 581 aa17.34■□□□□ 0.37
SQSTM1-201ENST00000360718 SALL2Q9Y467 1007 aaPredicted RBP17.33■□□□□ 0.37
SQSTM1-201ENST00000360718 ALS2Q96Q42 1657 aa17.33■□□□□ 0.36
SQSTM1-201ENST00000360718 MAP3K19Q56UN5 1328 aa17.32■□□□□ 0.36
SQSTM1-201ENST00000360718 PXDNQ92626 1479 aa17.32■□□□□ 0.36
SQSTM1-201ENST00000360718 DIAPH1O60610 1272 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-201ENST00000360718 U2AF1L5P0DN76 240 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-201ENST00000360718 U2AF1Q01081 240 aaKnown RBP eCLIP17.3■□□□□ 0.362e-7■□□□□ 8.5
SQSTM1-201ENST00000360718 B4GALNT3Q6L9W6 998 aa17.3■□□□□ 0.36
SQSTM1-201ENST00000360718 NFAT5O94916 1531 aa17.3■□□□□ 0.36
SQSTM1-201ENST00000360718 U2SURPO15042 1029 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-201ENST00000360718 NPHP3Q7Z494 1330 aa17.3■□□□□ 0.36
SQSTM1-201ENST00000360718 IL13P35225 146 aa17.29■□□□□ 0.36
SQSTM1-201ENST00000360718 HSP90AB2PQ58FF8 381 aa17.29■□□□□ 0.36
SQSTM1-201ENST00000360718 LMOD2Q6P5Q4 547 aa17.29■□□□□ 0.36
SQSTM1-201ENST00000360718 RNF123Q5XPI4 1314 aa17.28■□□□□ 0.36
SQSTM1-201ENST00000360718 APAF1O14727 1248 aa17.28■□□□□ 0.36
SQSTM1-201ENST00000360718 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
SQSTM1-201ENST00000360718 LTN1O94822 1766 aa17.28■□□□□ 0.36
SQSTM1-201ENST00000360718 SLIT3O75094 1523 aa17.27■□□□□ 0.36
SQSTM1-201ENST00000360718 MED1Q15648 1581 aaPredicted RBP17.27■□□□□ 0.35
SQSTM1-201ENST00000360718 ERICH6Q7L0X2 663 aa17.26■□□□□ 0.35
SQSTM1-201ENST00000360718 IQSEC2Q5JU85 1478 aa17.26■□□□□ 0.35
SQSTM1-201ENST00000360718 SBNO1A3KN83 1393 aa17.26■□□□□ 0.35
SQSTM1-201ENST00000360718 USP19O94966 1318 aa17.26■□□□□ 0.35
SQSTM1-201ENST00000360718 EIF4A2Q14240 407 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-201ENST00000360718 AEBP2Q6ZN18 517 aaPredicted RBP17.25■□□□□ 0.35
SQSTM1-201ENST00000360718 TNS3Q68CZ2 1445 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms