RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 GGNBP2Q9H3C7 697 aa29.65■■■□□ 2.34
HOXA4-201ENST00000360046 FYB1O15117 783 aa29.65■■■□□ 2.34
HOXA4-201ENST00000360046 FOXO3O43524 673 aa29.64■■■□□ 2.34
HOXA4-201ENST00000360046 PSME1Q06323 249 aa29.64■■■□□ 2.34
HOXA4-201ENST00000360046 TTC21BQ7Z4L5 1316 aa29.62■■■□□ 2.33
HOXA4-201ENST00000360046 NME9Q86XW9 330 aa29.61■■■□□ 2.33
HOXA4-201ENST00000360046 CERKQ8TCT0 537 aa29.6■■■□□ 2.33
HOXA4-201ENST00000360046 MRS2Q9HD23 443 aa29.6■■■□□ 2.33
HOXA4-201ENST00000360046 CCDC184Q52MB2 194 aa29.59■■■□□ 2.33
HOXA4-201ENST00000360046 NLRP13Q86W25 1043 aa29.59■■■□□ 2.33
HOXA4-201ENST00000360046 SSH2Q76I76 1423 aa29.59■■■□□ 2.33
HOXA4-201ENST00000360046 TNNT2P45379 298 aaPredicted RBP29.59■■■□□ 2.33
HOXA4-201ENST00000360046 BRINP3Q76B58 766 aa29.59■■■□□ 2.33
HOXA4-201ENST00000360046 PPP2R1AP30153 589 aa29.58■■■□□ 2.33
HOXA4-201ENST00000360046 XPCQ01831 940 aaPredicted RBP29.58■■■□□ 2.33
HOXA4-201ENST00000360046 PAK3O75914 559 aaPredicted RBP29.57■■■□□ 2.32
HOXA4-201ENST00000360046 TTC21AQ8NDW8 1320 aa29.57■■■□□ 2.32
HOXA4-201ENST00000360046 DDX17Q92841 729 aaKnown RBP29.56■■■□□ 2.32
HOXA4-201ENST00000360046 BRD4O60885 1362 aaPredicted RBP29.55■■■□□ 2.32
HOXA4-201ENST00000360046 KRT28Q7Z3Y7 464 aa29.54■■■□□ 2.32
HOXA4-201ENST00000360046 ILDR1Q86SU0 546 aaPredicted RBP29.54■■■□□ 2.32
HOXA4-201ENST00000360046 ZRANB1Q9UGI0 708 aa29.54■■■□□ 2.32
HOXA4-201ENST00000360046 TOM1O60784 492 aa29.53■■■□□ 2.32
HOXA4-201ENST00000360046 COG3Q96JB2 828 aa29.53■■■□□ 2.32
HOXA4-201ENST00000360046 PIK3C2AO00443 1686 aa29.52■■■□□ 2.32
HOXA4-201ENST00000360046 NPHP3Q7Z494 1330 aa29.52■■■□□ 2.32
HOXA4-201ENST00000360046 UBAP1LF5GYI3 381 aa29.5■■■□□ 2.31
HOXA4-201ENST00000360046 PIP4K2BP78356 416 aa29.48■■■□□ 2.31
HOXA4-201ENST00000360046 ABTB2Q8N961 1025 aa29.48■■■□□ 2.31
HOXA4-201ENST00000360046 OVOS2A0A0J9YW53 1432 aa29.48■■■□□ 2.31
HOXA4-201ENST00000360046 OVOS2Q6IE36 1432 aa29.48■■■□□ 2.31
HOXA4-201ENST00000360046 TRPM3Q9HCF6 1732 aaPredicted RBP29.47■■■□□ 2.31
HOXA4-201ENST00000360046 SCAF1Q9H7N4 1312 aaKnown RBP29.47■■■□□ 2.31
HOXA4-201ENST00000360046 IQSEC2Q5JU85 1478 aa29.47■■■□□ 2.31
HOXA4-201ENST00000360046 LMOD2Q6P5Q4 547 aa29.46■■■□□ 2.31
HOXA4-201ENST00000360046 NUTM2GQ5VZR2 741 aa29.45■■■□□ 2.31
HOXA4-201ENST00000360046 FBXO41Q8TF61 875 aa29.45■■■□□ 2.31
HOXA4-201ENST00000360046 NLRP6P59044 892 aa29.43■■■□□ 2.3
HOXA4-201ENST00000360046 YTHDC1Q96MU7 727 aaKnown RBP29.43■■■□□ 2.3
HOXA4-201ENST00000360046 USP31Q70CQ4 1352 aa29.43■■■□□ 2.3
HOXA4-201ENST00000360046 ROBO1Q9Y6N7 1651 aa29.42■■■□□ 2.3
HOXA4-201ENST00000360046 FAM9BQ8IZU0 186 aa29.42■■■□□ 2.3
HOXA4-201ENST00000360046 USP54Q70EL1 1684 aa29.41■■■□□ 2.3
HOXA4-201ENST00000360046 MTHFSP49914 203 aa29.41■■■□□ 2.3
HOXA4-201ENST00000360046 MAP2P11137 1827 aaKnown RBP29.4■■■□□ 2.3
HOXA4-201ENST00000360046 MARF1Q9Y4F3 1742 aaKnown RBP29.4■■■□□ 2.3
HOXA4-201ENST00000360046 PXDNQ92626 1479 aa29.4■■■□□ 2.3
HOXA4-201ENST00000360046 PLEKHG5O94827 1062 aa29.39■■■□□ 2.3
HOXA4-201ENST00000360046 FBLN1P23142 703 aa29.39■■■□□ 2.3
HOXA4-201ENST00000360046 SOX12O15370 315 aa29.37■■■□□ 2.29
HOXA4-201ENST00000360046 PNISRQ8TF01 805 aaKnown RBP29.37■■■□□ 2.29
HOXA4-201ENST00000360046 ALS2Q96Q42 1657 aa29.37■■■□□ 2.29
HOXA4-201ENST00000360046 SBNO1A3KN83 1393 aa29.37■■■□□ 2.29
HOXA4-201ENST00000360046 AATKQ6ZMQ8 1374 aa29.37■■■□□ 2.29
HOXA4-201ENST00000360046 SOS2Q07890 1332 aaPredicted RBP29.37■■■□□ 2.29
HOXA4-201ENST00000360046 NHSL1Q5SYE7 1610 aa29.36■■■□□ 2.29
HOXA4-201ENST00000360046 CFAP53Q96M91 514 aa29.35■■■□□ 2.29
HOXA4-201ENST00000360046 POLKQ9UBT6 870 aa29.34■■■□□ 2.29
HOXA4-201ENST00000360046 SPATA31A3Q5VYP0 1347 aa29.33■■■□□ 2.29
HOXA4-201ENST00000360046 TNS3Q68CZ2 1445 aa29.33■■■□□ 2.29
HOXA4-201ENST00000360046 PPM1GO15355 546 aaPredicted RBP29.33■■■□□ 2.29
HOXA4-201ENST00000360046 RRS1Q15050 365 aaKnown RBP29.32■■■□□ 2.28
HOXA4-201ENST00000360046 EMILIN1Q9Y6C2 1016 aa29.31■■■□□ 2.28
HOXA4-201ENST00000360046 SMG6Q86US8 1419 aaKnown RBP29.3■■■□□ 2.28
HOXA4-201ENST00000360046 WDR43Q15061 677 aaKnown RBP eCLIP29.29■■■□□ 2.28
HOXA4-201ENST00000360046 SHPRHQ149N8 1683 aa29.27■■■□□ 2.28
HOXA4-201ENST00000360046 ARHGEF10O15013 1369 aa29.27■■■□□ 2.28
HOXA4-201ENST00000360046 AHDC1Q5TGY3 1603 aaPredicted RBP29.26■■■□□ 2.28
HOXA4-201ENST00000360046 CDK12Q9NYV4 1490 aaPredicted RBP29.26■■■□□ 2.27
HOXA4-201ENST00000360046 LRRC59Q96AG4 307 aaKnown RBP29.25■■■□□ 2.27
HOXA4-201ENST00000360046 SLIT3O75094 1523 aa29.25■■■□□ 2.27
HOXA4-201ENST00000360046 COL3A1P02461 1466 aaPredicted RBP29.24■■■□□ 2.27
HOXA4-201ENST00000360046 KCNH5Q8NCM2 988 aa29.24■■■□□ 2.27
HOXA4-201ENST00000360046 USP19O94966 1318 aa29.24■■■□□ 2.27
HOXA4-201ENST00000360046 NFAT5O94916 1531 aa29.24■■■□□ 2.27
HOXA4-201ENST00000360046 MAP3K19Q56UN5 1328 aa29.23■■■□□ 2.27
HOXA4-201ENST00000360046 PNPLA6Q8IY17 1366 aa29.23■■■□□ 2.27
HOXA4-201ENST00000360046 PHLPP1O60346 1717 aa29.23■■■□□ 2.27
HOXA4-201ENST00000360046 PEAK1Q9H792 1746 aa29.23■■■□□ 2.27
HOXA4-201ENST00000360046 CABLES1Q8TDN4 633 aa29.23■■■□□ 2.27
HOXA4-201ENST00000360046 LTN1O94822 1766 aa29.22■■■□□ 2.27
HOXA4-201ENST00000360046 MED1Q15648 1581 aaPredicted RBP29.22■■■□□ 2.27
HOXA4-201ENST00000360046 GCP02774 474 aa29.21■■■□□ 2.27
HOXA4-201ENST00000360046 ADAMTS8Q9UP79 889 aa29.2■■■□□ 2.27
HOXA4-201ENST00000360046 INSRP06213 1382 aa29.2■■■□□ 2.26
HOXA4-201ENST00000360046 ZBTB7CA1YPR0 619 aa29.2■■■□□ 2.26
HOXA4-201ENST00000360046 PHRF1Q9P1Y6 1649 aaKnown RBP29.19■■■□□ 2.26
HOXA4-201ENST00000360046 DIAPH1O60610 1272 aaKnown RBP29.19■■■□□ 2.26
HOXA4-201ENST00000360046 AMPHP49418 695 aa29.18■■■□□ 2.26
HOXA4-201ENST00000360046 NUDCQ9Y266 331 aa29.17■■■□□ 2.26
HOXA4-201ENST00000360046 FLT4P35916 1363 aa29.17■■■□□ 2.26
HOXA4-201ENST00000360046 CRYBG1Q9Y4K1 1723 aa29.17■■■□□ 2.26
HOXA4-201ENST00000360046 HAP1P54257 671 aaPredicted RBP29.17■■■□□ 2.26
HOXA4-201ENST00000360046 HNRNPUQ00839 825 aaKnown RBP eCLIP29.17■■■□□ 2.26
HOXA4-201ENST00000360046 U2SURPO15042 1029 aaKnown RBP29.15■■■□□ 2.26
HOXA4-201ENST00000360046 COL16A1Q07092 1604 aaPredicted RBP29.14■■■□□ 2.26
HOXA4-201ENST00000360046 ZC3H6P61129 1189 aaKnown RBP29.14■■■□□ 2.25
HOXA4-201ENST00000360046 KIF24Q5T7B8 1368 aa29.14■■■□□ 2.25
HOXA4-201ENST00000360046 HSP90AB2PQ58FF8 381 aa29.13■■■□□ 2.25
HOXA4-201ENST00000360046 U2AF1L5P0DN76 240 aaPredicted RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms