RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 AKAP12Q02952 1782 aa11.35□□□□□ -0.59
TRIM55-204ENST00000353317 TERF2IPQ9NYB0 399 aa11.35□□□□□ -0.59
TRIM55-204ENST00000353317 ADAMTS8Q9UP79 889 aa11.35□□□□□ -0.59
TRIM55-204ENST00000353317 SALL2Q9Y467 1007 aaPredicted RBP11.35□□□□□ -0.59
TRIM55-204ENST00000353317 EXOC6Q8TAG9 804 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 LMTK3Q96Q04 1460 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 MON2Q7Z3U7 1717 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 KIF20BQ96Q89 1820 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 CDC42BPGQ6DT37 1551 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 STRCQ7RTU9 1775 aa11.34□□□□□ -0.59
TRIM55-204ENST00000353317 HDGFL2Q7Z4V5 671 aaPredicted RBP11.33□□□□□ -0.6
TRIM55-204ENST00000353317 PMFBP1Q8TBY8 1022 aa11.33□□□□□ -0.6
TRIM55-204ENST00000353317 RCAN3Q9UKA8 241 aa11.33□□□□□ -0.6
TRIM55-204ENST00000353317 ANKRD26Q9UPS8 1709 aa11.33□□□□□ -0.6
TRIM55-204ENST00000353317 NME9Q86XW9 330 aa11.33□□□□□ -0.6
TRIM55-204ENST00000353317 ACEP12821 1306 aa11.32□□□□□ -0.6
TRIM55-204ENST00000353317 ITSN1Q15811 1721 aa11.32□□□□□ -0.6
TRIM55-204ENST00000353317 MTHFSP49914 203 aa11.32□□□□□ -0.6
TRIM55-204ENST00000353317 SHPRHQ149N8 1683 aa11.32□□□□□ -0.6
TRIM55-204ENST00000353317 ZBTB47Q9UFB7 747 aaPredicted RBP11.32□□□□□ -0.6
TRIM55-204ENST00000353317 FMN2Q9NZ56 1722 aa11.31□□□□□ -0.6
TRIM55-204ENST00000353317 MAP2P11137 1827 aaKnown RBP11.31□□□□□ -0.6
TRIM55-204ENST00000353317 PLEKHG3A1L390 1219 aa11.31□□□□□ -0.6
TRIM55-204ENST00000353317 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
TRIM55-204ENST00000353317 NRKQ7Z2Y5 1582 aa11.3□□□□□ -0.6
TRIM55-204ENST00000353317 PDE3BQ13370 1112 aa11.29□□□□□ -0.6
TRIM55-204ENST00000353317 NWD1Q149M9 1564 aa11.29□□□□□ -0.6
TRIM55-204ENST00000353317 NSD2O96028 1365 aa11.29□□□□□ -0.6
TRIM55-204ENST00000353317 EDC4Q6P2E9 1401 aaKnown RBP11.29□□□□□ -0.6
TRIM55-204ENST00000353317 POLR3AO14802 1390 aaPredicted RBP11.29□□□□□ -0.6
TRIM55-204ENST00000353317 BLMP54132 1417 aaPredicted RBP11.29□□□□□ -0.6
TRIM55-204ENST00000353317 SSH2Q76I76 1423 aa11.28□□□□□ -0.6
TRIM55-204ENST00000353317 TCERG1O14776 1098 aaKnown RBP11.28□□□□□ -0.6
TRIM55-204ENST00000353317 CCDC146Q8IYE0 955 aa11.28□□□□□ -0.6
TRIM55-204ENST00000353317 USP6P35125 1406 aa11.27□□□□□ -0.6
TRIM55-204ENST00000353317 ADGRL3Q9HAR2 1447 aa11.27□□□□□ -0.61
TRIM55-204ENST00000353317 TTC21BQ7Z4L5 1316 aa11.27□□□□□ -0.61
TRIM55-204ENST00000353317 PDE4AP27815 886 aa11.26□□□□□ -0.61
TRIM55-204ENST00000353317 NPM2Q86SE8 214 aaKnown RBP11.26□□□□□ -0.61
TRIM55-204ENST00000353317 PROSER2Q86WR7 435 aaPredicted RBP11.26□□□□□ -0.61
TRIM55-204ENST00000353317 ZNF692Q9BU19 519 aaPredicted RBP11.26□□□□□ -0.61
TRIM55-204ENST00000353317 POLKQ9UBT6 870 aa11.26□□□□□ -0.61
TRIM55-204ENST00000353317 COL3A1P02461 1466 aaPredicted RBP11.26□□□□□ -0.61
TRIM55-204ENST00000353317 XIRP1Q702N8 1843 aaKnown RBP11.26□□□□□ -0.61
TRIM55-204ENST00000353317 PLIN1O60240 522 aa11.25□□□□□ -0.61
TRIM55-204ENST00000353317 WDR43Q15061 677 aaKnown RBP eCLIP11.25□□□□□ -0.61
TRIM55-204ENST00000353317 ORAI2Q96SN7 254 aa11.25□□□□□ -0.61
TRIM55-204ENST00000353317 BACH2Q9BYV9 841 aa11.25□□□□□ -0.61
TRIM55-204ENST00000353317 EMILIN1Q9Y6C2 1016 aa11.25□□□□□ -0.61
TRIM55-204ENST00000353317 RRS1Q15050 365 aaKnown RBP11.24□□□□□ -0.61
TRIM55-204ENST00000353317 NGDNQ8NEJ9 315 aaKnown RBP11.24□□□□□ -0.61
TRIM55-204ENST00000353317 ANKARQ7Z5J8 1434 aa11.24□□□□□ -0.61
TRIM55-204ENST00000353317 MARF1Q9Y4F3 1742 aaKnown RBP11.24□□□□□ -0.61
TRIM55-204ENST00000353317 RTL5Q5HYW3 569 aaPredicted RBP11.23□□□□□ -0.61
TRIM55-204ENST00000353317 PIK3C2AO00443 1686 aa11.23□□□□□ -0.61
TRIM55-204ENST00000353317 C14orf37Q86TY3 774 aa11.23□□□□□ -0.61
TRIM55-204ENST00000353317 TMEM94Q12767 1356 aa11.23□□□□□ -0.61
TRIM55-204ENST00000353317 PPM1GO15355 546 aaPredicted RBP11.22□□□□□ -0.61
TRIM55-204ENST00000353317 MS4A1P11836 297 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 NUTM2GQ5VZR2 741 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 PNPLA6Q8IY17 1366 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 ZNF335Q9H4Z2 1342 aaPredicted RBP11.22□□□□□ -0.61
TRIM55-204ENST00000353317 OVOS2A0A0J9YW53 1432 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 OVOS2Q6IE36 1432 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 APAF1O14727 1248 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 ESCO1Q5FWF5 840 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 INSRP06213 1382 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 SKAP1Q86WV1 359 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 COG3Q96JB2 828 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 PHF8Q9UPP1 1060 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 DMRT2Q9Y5R5 561 aa11.22□□□□□ -0.61
TRIM55-204ENST00000353317 SOX12O15370 315 aa11.21□□□□□ -0.61
TRIM55-204ENST00000353317 XPCQ01831 940 aaPredicted RBP11.21□□□□□ -0.61
TRIM55-204ENST00000353317 CRBNQ96SW2 442 aa11.21□□□□□ -0.61
TRIM55-204ENST00000353317 PEAK1Q9H792 1746 aa11.2□□□□□ -0.62
TRIM55-204ENST00000353317 FOXO3O43524 673 aa11.2□□□□□ -0.62
TRIM55-204ENST00000353317 DDX17Q92841 729 aaKnown RBP11.2□□□□□ -0.62
TRIM55-204ENST00000353317 C19orf44Q9H6X5 657 aa11.2□□□□□ -0.62
TRIM55-204ENST00000353317 SPINK5Q9NQ38 1064 aaPredicted RBP11.2□□□□□ -0.62
TRIM55-204ENST00000353317 ZNF521Q96K83 1311 aa11.19□□□□□ -0.62
TRIM55-204ENST00000353317 RRP7AQ9Y3A4 280 aaKnown RBP11.19□□□□□ -0.62
TRIM55-204ENST00000353317 U2AF1L5P0DN76 240 aaPredicted RBP11.19□□□□□ -0.62
TRIM55-204ENST00000353317 U2AF1Q01081 240 aaKnown RBP eCLIP11.19□□□□□ -0.62
TRIM55-204ENST00000353317 C20orf194Q5TEA3 1177 aa11.19□□□□□ -0.62
TRIM55-204ENST00000353317 AATKQ6ZMQ8 1374 aa11.18□□□□□ -0.62
TRIM55-204ENST00000353317 LAS1LQ9Y4W2 734 aaKnown RBP11.18□□□□□ -0.62
TRIM55-204ENST00000353317 C1orf167Q5SNV9 1468 aa11.18□□□□□ -0.62
TRIM55-204ENST00000353317 U2SURPO15042 1029 aaKnown RBP11.18□□□□□ -0.62
TRIM55-204ENST00000353317 CFAP53Q96M91 514 aa11.18□□□□□ -0.62
TRIM55-204ENST00000353317 PLEKHF1Q96S99 279 aa11.18□□□□□ -0.62
TRIM55-204ENST00000353317 USP31Q70CQ4 1352 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 TTC21AQ8NDW8 1320 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 MST1RQ04912 1400 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 DIAPH1O60610 1272 aaKnown RBP11.17□□□□□ -0.62
TRIM55-204ENST00000353317 IL13P35225 146 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 NLRP6P59044 892 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 NEUROD2Q15784 382 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 TCP11L2Q8N4U5 519 aa11.17□□□□□ -0.62
TRIM55-204ENST00000353317 IQSEC2Q5JU85 1478 aa11.16□□□□□ -0.62
TRIM55-204ENST00000353317 LRRC7Q96NW7 1537 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms