RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 SPATA31A3Q5VYP0 1347 aa10.91□□□□□ -0.66
ZNF540-202ENST00000343599 CHD4Q14839 1912 aa10.9□□□□□ -0.66
ZNF540-202ENST00000343599 ARXQ96QS3 562 aa10.9□□□□□ -0.66
ZNF540-202ENST00000343599 GTF3C3Q9Y5Q9 886 aa10.9□□□□□ -0.67
ZNF540-202ENST00000343599 KIF13BQ9NQT8 1826 aa10.89□□□□□ -0.67
ZNF540-202ENST00000343599 PSME1Q06323 249 aa10.89□□□□□ -0.67
ZNF540-202ENST00000343599 AMOTL2Q9Y2J4 779 aa10.89□□□□□ -0.67
ZNF540-202ENST00000343599 BARGINQ6ZT62 677 aa10.88□□□□□ -0.67
ZNF540-202ENST00000343599 AFF2P51816 1311 aa10.88□□□□□ -0.67
ZNF540-202ENST00000343599 ROBO2Q9HCK4 1378 aa10.87□□□□□ -0.67
ZNF540-202ENST00000343599 USP19O94966 1318 aa10.86□□□□□ -0.67
ZNF540-202ENST00000343599 KANK4Q5T7N3 995 aaPredicted RBP10.86□□□□□ -0.67
ZNF540-202ENST00000343599 KLHL34Q8N239 644 aa10.85□□□□□ -0.67
ZNF540-202ENST00000343599 CDCA7Q9BWT1 371 aaPredicted RBP10.85□□□□□ -0.67
ZNF540-202ENST00000343599 C14orf93Q9H972 538 aaKnown RBP10.85□□□□□ -0.67
ZNF540-202ENST00000343599 C10orf71Q711Q0 1435 aa10.84□□□□□ -0.67
ZNF540-202ENST00000343599 HAP1P54257 671 aaPredicted RBP10.84□□□□□ -0.67
ZNF540-202ENST00000343599 PLCB2Q00722 1185 aa10.84□□□□□ -0.67
ZNF540-202ENST00000343599 SSH2Q76I76 1423 aa10.84□□□□□ -0.67
ZNF540-202ENST00000343599 UNC5CLQ8IV45 518 aa10.83□□□□□ -0.68
ZNF540-202ENST00000343599 STAG3Q9UJ98 1225 aa10.83□□□□□ -0.68
ZNF540-202ENST00000343599 ZRANB1Q9UGI0 708 aa10.82□□□□□ -0.68
ZNF540-202ENST00000343599 BCANQ96GW7 911 aa10.82□□□□□ -0.68
ZNF540-202ENST00000343599 ATP1B4Q9UN42 357 aaPredicted RBP10.81□□□□□ -0.68
ZNF540-202ENST00000343599 MYOM1P52179 1685 aa10.81□□□□□ -0.68
ZNF540-202ENST00000343599 PKD1L3Q7Z443 1732 aa10.81□□□□□ -0.68
ZNF540-202ENST00000343599 PIP4K2BP78356 416 aa10.81□□□□□ -0.68
ZNF540-202ENST00000343599 KIF24Q5T7B8 1368 aa10.8□□□□□ -0.68
ZNF540-202ENST00000343599 GJD4Q96KN9 370 aaPredicted RBP10.8□□□□□ -0.68
ZNF540-202ENST00000343599 USP31Q70CQ4 1352 aa10.79□□□□□ -0.68
ZNF540-202ENST00000343599 NSD2O96028 1365 aa10.78□□□□□ -0.68
ZNF540-202ENST00000343599 RRP7BPQ9NSQ0 103 aa10.78□□□□□ -0.68
ZNF540-202ENST00000343599 NFAT5O94916 1531 aa10.78□□□□□ -0.68
ZNF540-202ENST00000343599 SHANK3Q9BYB0 1731 aa10.78□□□□□ -0.68
ZNF540-202ENST00000343599 C5P01031 1676 aa10.78□□□□□ -0.68
ZNF540-202ENST00000343599 ANP32EQ9BTT0 268 aa10.77□□□□□ -0.69
ZNF540-202ENST00000343599 NCAPD2Q15021 1401 aa10.77□□□□□ -0.69
ZNF540-202ENST00000343599 GPRASP1Q5JY77 1395 aa10.76□□□□□ -0.69
ZNF540-202ENST00000343599 SPATA31A5Q5VU36 1347 aa10.75□□□□□ -0.69
ZNF540-202ENST00000343599 SPATA31A7Q8IWB4 1347 aa10.75□□□□□ -0.69
ZNF540-202ENST00000343599 PLEKHG3A1L390 1219 aa10.75□□□□□ -0.69
ZNF540-202ENST00000343599 QTRT2Q9H974 415 aaKnown RBP10.75□□□□□ -0.69
ZNF540-202ENST00000343599 OVOS2A0A0J9YW53 1432 aa10.75□□□□□ -0.69
ZNF540-202ENST00000343599 OVOS2Q6IE36 1432 aa10.75□□□□□ -0.69
ZNF540-202ENST00000343599 TRIM26Q12899 539 aaPredicted RBP10.74□□□□□ -0.69
ZNF540-202ENST00000343599 MEX3CQ5U5Q3 659 aaKnown RBP10.74□□□□□ -0.69
ZNF540-202ENST00000343599 USP21Q9UK80 565 aa10.72□□□□□ -0.69
ZNF540-202ENST00000343599 CCDC7Q96M83 1385 aa10.72□□□□□ -0.69
ZNF540-202ENST00000343599 PODXL2Q9NZ53 605 aa10.72□□□□□ -0.69
ZNF540-202ENST00000343599 ARFGEF2Q9Y6D5 1785 aa10.71□□□□□ -0.69
ZNF540-202ENST00000343599 PLSCR1O15162 318 aa10.71□□□□□ -0.69
ZNF540-202ENST00000343599 OVOS2A0A0G2JMS6 1433 aa10.71□□□□□ -0.7
ZNF540-202ENST00000343599 NPM3O75607 178 aaKnown RBP10.71□□□□□ -0.7
ZNF540-202ENST00000343599 TAF1LQ8IZX4 1826 aa10.7□□□□□ -0.7
ZNF540-202ENST00000343599 TUBGCP6Q96RT7 1819 aa10.7□□□□□ -0.7
ZNF540-202ENST00000343599 NSD3Q9BZ95 1437 aa10.7□□□□□ -0.7
ZNF540-202ENST00000343599 DLEC1Q9Y238 1755 aa10.7□□□□□ -0.7
ZNF540-202ENST00000343599 FKBP8Q14318 412 aa10.69□□□□□ -0.7
ZNF540-202ENST00000343599 LTN1O94822 1766 aa10.69□□□□□ -0.7
ZNF540-202ENST00000343599 KIAA1551Q9HCM1 1747 aa10.69□□□□□ -0.7
ZNF540-202ENST00000343599 KIF20BQ96Q89 1820 aa10.69□□□□□ -0.7
ZNF540-202ENST00000343599 ARFGEF1Q9Y6D6 1849 aa10.69□□□□□ -0.7
ZNF540-202ENST00000343599 CRB1P82279 1406 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 TNS2Q63HR2 1409 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 COL5A2P05997 1499 aaPredicted RBP10.68□□□□□ -0.7
ZNF540-202ENST00000343599 RTL1A6NKG5 1358 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 ADAMTS7Q9UKP4 1686 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 TTC21AQ8NDW8 1320 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 BAG6P46379 1132 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 SLC26A8Q96RN1 970 aa10.68□□□□□ -0.7
ZNF540-202ENST00000343599 FAM196AQ6ZSG2 479 aa10.67□□□□□ -0.7
ZNF540-202ENST00000343599 TNRC6CQ9HCJ0 1690 aaKnown RBP10.67□□□□□ -0.7
ZNF540-202ENST00000343599 CPSF1Q10570 1443 aaKnown RBP10.67□□□□□ -0.7
ZNF540-202ENST00000343599 BTAF1O14981 1849 aa10.66□□□□□ -0.7
ZNF540-202ENST00000343599 SPATA31A1Q5TZJ5 1347 aa10.65□□□□□ -0.7
ZNF540-202ENST00000343599 HOMEZQ8IX15 550 aa10.65□□□□□ -0.7
ZNF540-202ENST00000343599 COL5A3P25940 1745 aaPredicted RBP10.63□□□□□ -0.71
ZNF540-202ENST00000343599 BRCA1P38398 1863 aaKnown RBP10.62□□□□□ -0.71
ZNF540-202ENST00000343599 PHF8Q9UPP1 1060 aa10.62□□□□□ -0.71
ZNF540-202ENST00000343599 NRXN2Q9P2S2 1712 aa10.62□□□□□ -0.71
ZNF540-202ENST00000343599 SLC16A10Q8TF71 515 aa10.62□□□□□ -0.71
ZNF540-202ENST00000343599 CAMKK2Q96RR4 588 aa10.62□□□□□ -0.71
ZNF540-202ENST00000343599 CGNL1Q0VF96 1302 aa10.61□□□□□ -0.71
ZNF540-202ENST00000343599 KRT27Q7Z3Y8 459 aa10.61□□□□□ -0.71
ZNF540-202ENST00000343599 KDM2AQ9Y2K7 1162 aa10.61□□□□□ -0.71
ZNF540-202ENST00000343599 THSD7BQ9C0I4 1608 aa10.61□□□□□ -0.71
ZNF540-202ENST00000343599 USP6P35125 1406 aa10.6□□□□□ -0.71
ZNF540-202ENST00000343599 MAP2P11137 1827 aaKnown RBP10.59□□□□□ -0.71
ZNF540-202ENST00000343599 KIAA0232Q92628 1395 aa10.59□□□□□ -0.71
ZNF540-202ENST00000343599 SF3B2Q13435 895 aaKnown RBP10.59□□□□□ -0.71
ZNF540-202ENST00000343599 KRT28Q7Z3Y7 464 aa10.58□□□□□ -0.72
ZNF540-202ENST00000343599 SMG6Q86US8 1419 aaKnown RBP10.58□□□□□ -0.72
ZNF540-202ENST00000343599 PXDNLA1KZ92 1463 aa10.57□□□□□ -0.72
ZNF540-202ENST00000343599 DUOX1Q9NRD9 1551 aa10.57□□□□□ -0.72
ZNF540-202ENST00000343599 ZNF692Q9BU19 519 aaPredicted RBP10.56□□□□□ -0.72
ZNF540-202ENST00000343599 WASLO00401 505 aaPredicted RBP10.56□□□□□ -0.72
ZNF540-202ENST00000343599 RGPD5Q99666 1765 aa10.56□□□□□ -0.72
ZNF540-202ENST00000343599 ADCY9O60503 1353 aa10.55□□□□□ -0.72
ZNF540-202ENST00000343599 UBR3Q6ZT12 1888 aa10.55□□□□□ -0.72
ZNF540-202ENST00000343599 DOT1LQ8TEK3 1739 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms