RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 CDC42BPGQ6DT37 1551 aa19.68■□□□□ 0.74
TPM3-208ENST00000341485 NUTM2FA1L443 756 aa19.68■□□□□ 0.74
TPM3-208ENST00000341485 ITSN1Q15811 1721 aa19.67■□□□□ 0.74
TPM3-208ENST00000341485 TRMT2AQ8IZ69 625 aaKnown RBP19.67■□□□□ 0.74
TPM3-208ENST00000341485 GGNBP2Q9H3C7 697 aa19.67■□□□□ 0.74
TPM3-208ENST00000341485 SHPRHQ149N8 1683 aa19.67■□□□□ 0.74
TPM3-208ENST00000341485 CPSF1Q10570 1443 aaKnown RBP19.67■□□□□ 0.74
TPM3-208ENST00000341485 KIF20BQ96Q89 1820 aa19.67■□□□□ 0.74
TPM3-208ENST00000341485 C20orf194Q5TEA3 1177 aa19.66■□□□□ 0.74
TPM3-208ENST00000341485 ANKRD26Q9UPS8 1709 aa19.66■□□□□ 0.74
TPM3-208ENST00000341485 TOPAZ1Q8N9V7 1692 aa19.65■□□□□ 0.74
TPM3-208ENST00000341485 FYB1O15117 783 aa19.65■□□□□ 0.74
TPM3-208ENST00000341485 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.65■□□□□ 0.74
TPM3-208ENST00000341485 EDC4Q6P2E9 1401 aaKnown RBP19.64■□□□□ 0.74
TPM3-208ENST00000341485 SPINK5Q9NQ38 1064 aaPredicted RBP19.64■□□□□ 0.73
TPM3-208ENST00000341485 AKAP12Q02952 1782 aa19.64■□□□□ 0.73
TPM3-208ENST00000341485 ZNF692Q9BU19 519 aaPredicted RBP19.63■□□□□ 0.73
TPM3-208ENST00000341485 MON2Q7Z3U7 1717 aa19.63■□□□□ 0.73
TPM3-208ENST00000341485 TCERG1O14776 1098 aaKnown RBP19.61■□□□□ 0.73
TPM3-208ENST00000341485 PLEKHG3A1L390 1219 aa19.61■□□□□ 0.73
TPM3-208ENST00000341485 HSPA2P54652 639 aa19.61■□□□□ 0.73
TPM3-208ENST00000341485 NALCNQ8IZF0 1738 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 NGEFQ8N5V2 710 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 ACEP12821 1306 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 NKTRP30414 1462 aaKnown RBP19.6■□□□□ 0.73
TPM3-208ENST00000341485 NWD1Q149M9 1564 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 CFAP53Q96M91 514 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 DMRT2Q9Y5R5 561 aa19.6■□□□□ 0.73
TPM3-208ENST00000341485 MTHFSP49914 203 aa19.59■□□□□ 0.73
TPM3-208ENST00000341485 ANKARQ7Z5J8 1434 aa19.59■□□□□ 0.73
TPM3-208ENST00000341485 FMN2Q9NZ56 1722 aa19.59■□□□□ 0.73
TPM3-208ENST00000341485 E9PSI1 815 aa19.58■□□□□ 0.73
TPM3-208ENST00000341485 C14orf37Q86TY3 774 aa19.58■□□□□ 0.73
TPM3-208ENST00000341485 RBM33Q96EV2 1170 aaKnown RBP19.58■□□□□ 0.73
TPM3-208ENST00000341485 RGPD8O14715 1765 aaPredicted RBP19.57■□□□□ 0.72
TPM3-208ENST00000341485 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.56■□□□□ 0.72
TPM3-208ENST00000341485 PMFBP1Q8TBY8 1022 aa19.56■□□□□ 0.72
TPM3-208ENST00000341485 ADGRL3Q9HAR2 1447 aa19.56■□□□□ 0.72
TPM3-208ENST00000341485 NME9Q86XW9 330 aa19.56■□□□□ 0.72
TPM3-208ENST00000341485 LMTK3Q96Q04 1460 aa19.56■□□□□ 0.72
TPM3-208ENST00000341485 NGDNQ8NEJ9 315 aaKnown RBP19.55■□□□□ 0.72
TPM3-208ENST00000341485 IQSEC2Q5JU85 1478 aa19.55■□□□□ 0.72
TPM3-208ENST00000341485 MS4A1P11836 297 aa19.55■□□□□ 0.72
TPM3-208ENST00000341485 PROSER2Q86WR7 435 aaPredicted RBP19.55■□□□□ 0.72
TPM3-208ENST00000341485 WWC1Q8IX03 1113 aa19.55■□□□□ 0.72
TPM3-208ENST00000341485 USP6P35125 1406 aa19.54■□□□□ 0.72
TPM3-208ENST00000341485 COG3Q96JB2 828 aa19.54■□□□□ 0.72
TPM3-208ENST00000341485 KDM2BQ8NHM5 1336 aa19.54■□□□□ 0.72
TPM3-208ENST00000341485 NRKQ7Z2Y5 1582 aa19.53■□□□□ 0.72
TPM3-208ENST00000341485 RUNDC1Q96C34 613 aa19.53■□□□□ 0.72
TPM3-208ENST00000341485 TTC21BQ7Z4L5 1316 aa19.53■□□□□ 0.72
TPM3-208ENST00000341485 ANP32AP39687 249 aaKnown RBP19.52■□□□□ 0.72
TPM3-208ENST00000341485 PDE4AP27815 886 aa19.52■□□□□ 0.71
TPM3-208ENST00000341485 NOP58Q9Y2X3 529 aaKnown RBP19.52■□□□□ 0.71
TPM3-208ENST00000341485 BCAR3O75815 825 aa19.51■□□□□ 0.71
TPM3-208ENST00000341485 SKAP1Q86WV1 359 aa19.51■□□□□ 0.71
TPM3-208ENST00000341485 ZRANB1Q9UGI0 708 aa19.51■□□□□ 0.71
TPM3-208ENST00000341485 TCP11L2Q8N4U5 519 aa19.49■□□□□ 0.71
TPM3-208ENST00000341485 IPO9Q96P70 1041 aaKnown RBP19.49■□□□□ 0.71
TPM3-208ENST00000341485 BACH2Q9BYV9 841 aa19.49■□□□□ 0.71
TPM3-208ENST00000341485 RRP7AQ9Y3A4 280 aaKnown RBP19.49■□□□□ 0.71
TPM3-208ENST00000341485 PHF23Q9BUL5 403 aaPredicted RBP19.48■□□□□ 0.71
TPM3-208ENST00000341485 PAK3O75914 559 aaPredicted RBP19.48■□□□□ 0.71
TPM3-208ENST00000341485 TTC21AQ8NDW8 1320 aa19.48■□□□□ 0.71
TPM3-208ENST00000341485 NEUROD2Q15784 382 aa19.47■□□□□ 0.71
TPM3-208ENST00000341485 CENPQQ7L2Z9 268 aaPredicted RBP19.47■□□□□ 0.71
TPM3-208ENST00000341485 PHF8Q9UPP1 1060 aa19.47■□□□□ 0.71
TPM3-208ENST00000341485 PPM1GO15355 546 aaPredicted RBP19.46■□□□□ 0.71
TPM3-208ENST00000341485 SSH2Q76I76 1423 aa19.46■□□□□ 0.71
TPM3-208ENST00000341485 STRCQ7RTU9 1775 aa19.46■□□□□ 0.71
TPM3-208ENST00000341485 MAP2P11137 1827 aaKnown RBP19.45■□□□□ 0.7
TPM3-208ENST00000341485 FBLN1P23142 703 aa19.45■□□□□ 0.7
TPM3-208ENST00000341485 ESCO1Q5FWF5 840 aa19.45■□□□□ 0.7
TPM3-208ENST00000341485 POLKQ9UBT6 870 aa19.45■□□□□ 0.7
TPM3-208ENST00000341485 STRCP1A6NGW2 1772 aa19.45■□□□□ 0.7
TPM3-208ENST00000341485 AATKQ6ZMQ8 1374 aa19.45■□□□□ 0.7
TPM3-208ENST00000341485 COL3A1P02461 1466 aaPredicted RBP19.44■□□□□ 0.7
TPM3-208ENST00000341485 U2AF1L5P0DN76 240 aaPredicted RBP19.44■□□□□ 0.7
TPM3-208ENST00000341485 U2AF1Q01081 240 aaKnown RBP eCLIP19.44■□□□□ 0.77e-10■■□□□ 13
TPM3-208ENST00000341485 OVOS2A0A0J9YW53 1432 aa19.43■□□□□ 0.7
TPM3-208ENST00000341485 OVOS2Q6IE36 1432 aa19.43■□□□□ 0.7
TPM3-208ENST00000341485 U2SURPO15042 1029 aaKnown RBP19.43■□□□□ 0.7
TPM3-208ENST00000341485 DIAPH1O60610 1272 aaKnown RBP19.43■□□□□ 0.7
TPM3-208ENST00000341485 CCDC27Q2M243 656 aa19.43■□□□□ 0.7
TPM3-208ENST00000341485 WDR63Q8IWG1 891 aa19.43■□□□□ 0.7
TPM3-208ENST00000341485 C19orf44Q9H6X5 657 aa19.43■□□□□ 0.7
TPM3-208ENST00000341485 TMEM94Q12767 1356 aa19.42■□□□□ 0.7
TPM3-208ENST00000341485 EMILIN1Q9Y6C2 1016 aa19.42■□□□□ 0.7
TPM3-208ENST00000341485 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
TPM3-208ENST00000341485 NPM2Q86SE8 214 aaKnown RBP19.4■□□□□ 0.7
TPM3-208ENST00000341485 NCOA3Q9Y6Q9 1424 aa19.4■□□□□ 0.7
TPM3-208ENST00000341485 PDE3AQ14432 1141 aa19.4■□□□□ 0.7
TPM3-208ENST00000341485 RRS1Q15050 365 aaKnown RBP19.4■□□□□ 0.7
TPM3-208ENST00000341485 NCBP3Q53F19 620 aaKnown RBP19.4■□□□□ 0.7
TPM3-208ENST00000341485 ATF3P18847 181 aa19.39■□□□□ 0.69
TPM3-208ENST00000341485 CDK12Q9NYV4 1490 aaPredicted RBP19.39■□□□□ 0.69
TPM3-208ENST00000341485 PIK3C2AO00443 1686 aa19.39■□□□□ 0.69
TPM3-208ENST00000341485 ZBTB47Q9UFB7 747 aaPredicted RBP19.39■□□□□ 0.69
TPM3-208ENST00000341485 PSME1Q06323 249 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms