RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 TTC21AQ8NDW8 1320 aa13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 USP54Q70EL1 1684 aa13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 FYB1O15117 783 aa13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 TRPM3Q9HCF6 1732 aaPredicted RBP13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 PIK3C2AO00443 1686 aa13.91□□□□□ -0.18
VIPAS39-201ENST00000327028 MORC1Q86VD1 984 aa13.9□□□□□ -0.18
VIPAS39-201ENST00000327028 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
VIPAS39-201ENST00000327028 NME9Q86XW9 330 aa13.89□□□□□ -0.19
VIPAS39-201ENST00000327028 SLAIN2Q9P270 581 aa13.89□□□□□ -0.19
VIPAS39-201ENST00000327028 OVOS2A0A0J9YW53 1432 aa13.89□□□□□ -0.19
VIPAS39-201ENST00000327028 OVOS2Q6IE36 1432 aa13.89□□□□□ -0.19
VIPAS39-201ENST00000327028 IQSEC2Q5JU85 1478 aa13.88□□□□□ -0.19
VIPAS39-201ENST00000327028 NLRP13Q86W25 1043 aa13.88□□□□□ -0.19
VIPAS39-201ENST00000327028 PPP2R1AP30153 589 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 PSME1Q06323 249 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 USP31Q70CQ4 1352 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 BRINP3Q76B58 766 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 MARF1Q9Y4F3 1742 aaKnown RBP13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 NHSL1Q5SYE7 1610 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 FOXO3O43524 673 aa13.87□□□□□ -0.19
VIPAS39-201ENST00000327028 PXDNQ92626 1479 aa13.86□□□□□ -0.19
VIPAS39-201ENST00000327028 NPHP3Q7Z494 1330 aa13.86□□□□□ -0.19
VIPAS39-201ENST00000327028 SCAF1Q9H7N4 1312 aaKnown RBP13.86□□□□□ -0.19
VIPAS39-201ENST00000327028 ALS2Q96Q42 1657 aa13.86□□□□□ -0.19
VIPAS39-201ENST00000327028 COG3Q96JB2 828 aa13.85□□□□□ -0.19
VIPAS39-201ENST00000327028 MRS2Q9HD23 443 aa13.85□□□□□ -0.19
VIPAS39-201ENST00000327028 CCDC184Q52MB2 194 aa13.84□□□□□ -0.19
VIPAS39-201ENST00000327028 KRT28Q7Z3Y7 464 aa13.84□□□□□ -0.19
VIPAS39-201ENST00000327028 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
VIPAS39-201ENST00000327028 ROBO1Q9Y6N7 1651 aa13.84□□□□□ -0.19
VIPAS39-201ENST00000327028 SBNO1A3KN83 1393 aa13.84□□□□□ -0.19
VIPAS39-201ENST00000327028 AATKQ6ZMQ8 1374 aa13.83□□□□□ -0.2
VIPAS39-201ENST00000327028 PAK3O75914 559 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-201ENST00000327028 TNNT2P45379 298 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-201ENST00000327028 XPCQ01831 940 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-201ENST00000327028 TNS3Q68CZ2 1445 aa13.82□□□□□ -0.2
VIPAS39-201ENST00000327028 SMG6Q86US8 1419 aaKnown RBP13.82□□□□□ -0.2
VIPAS39-201ENST00000327028 AHDC1Q5TGY3 1603 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-201ENST00000327028 MAP2P11137 1827 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-201ENST00000327028 ABTB2Q8N961 1025 aa13.81□□□□□ -0.2
VIPAS39-201ENST00000327028 DDX17Q92841 729 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-201ENST00000327028 SLIT3O75094 1523 aa13.8□□□□□ -0.2
VIPAS39-201ENST00000327028 NLRP6P59044 892 aa13.8□□□□□ -0.2
VIPAS39-201ENST00000327028 MED1Q15648 1581 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-201ENST00000327028 SOS2Q07890 1332 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-201ENST00000327028 TOM1O60784 492 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 CDK12Q9NYV4 1490 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 NFAT5O94916 1531 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 CERKQ8TCT0 537 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 COL3A1P02461 1466 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 CRYBG1Q9Y4K1 1723 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 USP19O94966 1318 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 SPATA31A3Q5VYP0 1347 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 ARHGEF10O15013 1369 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 SHPRHQ149N8 1683 aa13.78□□□□□ -0.2
VIPAS39-201ENST00000327028 MTHFSP49914 203 aa13.77□□□□□ -0.2
VIPAS39-201ENST00000327028 PHRF1Q9P1Y6 1649 aaKnown RBP13.77□□□□□ -0.2
VIPAS39-201ENST00000327028 NUTM2GQ5VZR2 741 aa13.77□□□□□ -0.21
VIPAS39-201ENST00000327028 PNISRQ8TF01 805 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-201ENST00000327028 POLKQ9UBT6 870 aa13.77□□□□□ -0.21
VIPAS39-201ENST00000327028 PEAK1Q9H792 1746 aa13.76□□□□□ -0.21
VIPAS39-201ENST00000327028 CFAP53Q96M91 514 aa13.76□□□□□ -0.21
VIPAS39-201ENST00000327028 INSRP06213 1382 aa13.76□□□□□ -0.21
VIPAS39-201ENST00000327028 PNPLA6Q8IY17 1366 aa13.75□□□□□ -0.21
VIPAS39-201ENST00000327028 PHLPP1O60346 1717 aa13.75□□□□□ -0.21
VIPAS39-201ENST00000327028 LTN1O94822 1766 aa13.75□□□□□ -0.21
VIPAS39-201ENST00000327028 UBAP1LF5GYI3 381 aa13.75□□□□□ -0.21
VIPAS39-201ENST00000327028 LMOD2Q6P5Q4 547 aa13.75□□□□□ -0.21
VIPAS39-201ENST00000327028 ABCA3Q99758 1704 aa13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 FBLN1P23142 703 aa13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 KCNH5Q8NCM2 988 aa13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 EMILIN1Q9Y6C2 1016 aa13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 COL16A1Q07092 1604 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 KIF24Q5T7B8 1368 aa13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 RRS1Q15050 365 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-201ENST00000327028 FAM9BQ8IZU0 186 aa13.73□□□□□ -0.21
VIPAS39-201ENST00000327028 RTL1A6NKG5 1358 aa13.72□□□□□ -0.21
VIPAS39-201ENST00000327028 MAP3K19Q56UN5 1328 aa13.72□□□□□ -0.21
VIPAS39-201ENST00000327028 SOX12O15370 315 aa13.72□□□□□ -0.21
VIPAS39-201ENST00000327028 COL22A1Q8NFW1 1626 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-201ENST00000327028 FLT4P35916 1363 aa13.71□□□□□ -0.21
VIPAS39-201ENST00000327028 WDR43Q15061 677 aaKnown RBP eCLIP13.71□□□□□ -0.21
VIPAS39-201ENST00000327028 PPM1GO15355 546 aaPredicted RBP13.71□□□□□ -0.22
VIPAS39-201ENST00000327028 GCP02774 474 aa13.71□□□□□ -0.22
VIPAS39-201ENST00000327028 PIP4K2BP78356 416 aa13.71□□□□□ -0.22
VIPAS39-201ENST00000327028 BLMP54132 1417 aaPredicted RBP13.7□□□□□ -0.22
VIPAS39-201ENST00000327028 ABCC6O95255 1503 aa13.69□□□□□ -0.22
VIPAS39-201ENST00000327028 LRRC59Q96AG4 307 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-201ENST00000327028 DIAPH1O60610 1272 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-201ENST00000327028 YTHDC1Q96MU7 727 aaKnown RBP13.69□□□□□ -0.22
VIPAS39-201ENST00000327028 AMPHP49418 695 aa13.68□□□□□ -0.22
VIPAS39-201ENST00000327028 NUDCQ9Y266 331 aa13.68□□□□□ -0.22
VIPAS39-201ENST00000327028 ARHGEF25Q86VW2 580 aa13.67□□□□□ -0.22
VIPAS39-201ENST00000327028 RGPD1P0DJD0 1748 aa13.67□□□□□ -0.22
VIPAS39-201ENST00000327028 CPDO75976 1380 aa13.67□□□□□ -0.22
VIPAS39-201ENST00000327028 HOXC9P31274 260 aa13.67□□□□□ -0.22
VIPAS39-201ENST00000327028 ADAMTS8Q9UP79 889 aa13.67□□□□□ -0.22
VIPAS39-201ENST00000327028 CABLES1Q8TDN4 633 aa13.66□□□□□ -0.22
VIPAS39-201ENST00000327028 COL18A1P39060 1754 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms