RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 SOX12O15370 315 aa19.89■□□□□ 0.77
SHROOM1-201ENST00000319854 RRAGDQ9NQL2 400 aaPredicted RBP19.88■□□□□ 0.77
SHROOM1-201ENST00000319854 CEBPAP49715 358 aaPredicted RBP19.88■□□□□ 0.77
SHROOM1-201ENST00000319854 PTPRMP28827 1452 aa19.88■□□□□ 0.77
SHROOM1-201ENST00000319854 TMEM131LA2VDJ0 1609 aa19.88■□□□□ 0.77
SHROOM1-201ENST00000319854 ATAD2Q6PL18 1390 aa19.87■□□□□ 0.77
SHROOM1-201ENST00000319854 RIPK4P57078 832 aa19.87■□□□□ 0.77
SHROOM1-201ENST00000319854 ABCC11Q96J66 1382 aa19.86■□□□□ 0.77
SHROOM1-201ENST00000319854 DIAPH1O60610 1272 aaKnown RBP19.86■□□□□ 0.77
SHROOM1-201ENST00000319854 RIMS2Q9UQ26 1411 aa19.86■□□□□ 0.77
SHROOM1-201ENST00000319854 EXOSC9Q06265 439 aaKnown RBP19.86■□□□□ 0.77
SHROOM1-201ENST00000319854 NME9Q86XW9 330 aa19.86■□□□□ 0.77
SHROOM1-201ENST00000319854 TMPOP42166 694 aaKnown RBP19.85■□□□□ 0.77
SHROOM1-201ENST00000319854 DIP2BQ9P265 1576 aa19.85■□□□□ 0.77
SHROOM1-201ENST00000319854 THUMPD2Q9BTF0 503 aaKnown RBP19.85■□□□□ 0.77
SHROOM1-201ENST00000319854 MYH16Q9H6N6 1097 aa19.85■□□□□ 0.77
SHROOM1-201ENST00000319854 EMILIN1Q9Y6C2 1016 aa19.85■□□□□ 0.77
SHROOM1-201ENST00000319854 WDR63Q8IWG1 891 aa19.84■□□□□ 0.77
SHROOM1-201ENST00000319854 ALKQ9UM73 1620 aa19.83■□□□□ 0.77
SHROOM1-201ENST00000319854 NGEFQ8N5V2 710 aa19.83■□□□□ 0.77
SHROOM1-201ENST00000319854 SMC4Q9NTJ3 1288 aa19.83■□□□□ 0.77
SHROOM1-201ENST00000319854 SHPRHQ149N8 1683 aa19.83■□□□□ 0.77
SHROOM1-201ENST00000319854 ZFYVE9O95405 1425 aa19.83■□□□□ 0.77
SHROOM1-201ENST00000319854 PUS7Q96PZ0 661 aaKnown RBP19.83■□□□□ 0.76
SHROOM1-201ENST00000319854 METP08581 1390 aa19.83■□□□□ 0.76
SHROOM1-201ENST00000319854 RRS1Q15050 365 aaKnown RBP19.83■□□□□ 0.76
SHROOM1-201ENST00000319854 CLTCQ00610 1675 aaKnown RBP19.82■□□□□ 0.76
SHROOM1-201ENST00000319854 FTSJ3Q8IY81 847 aaKnown RBP19.82■□□□□ 0.76
SHROOM1-201ENST00000319854 USP19O94966 1318 aa19.82■□□□□ 0.76
SHROOM1-201ENST00000319854 ZMYM3Q14202 1370 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 PRKAR2BP31323 418 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 NSD2O96028 1365 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 ELL2O00472 640 aaPredicted RBP19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 PDE3AQ14432 1141 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 SLC26A8Q96RN1 970 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 TRIM35Q9UPQ4 493 aa19.81■□□□□ 0.76
SHROOM1-201ENST00000319854 A2ML1A8K2U0 1454 aa19.8■□□□□ 0.76
SHROOM1-201ENST00000319854 PCDHB15Q9Y5E8 787 aa19.8■□□□□ 0.76
SHROOM1-201ENST00000319854 SEC24BO95487 1268 aa19.79■□□□□ 0.76
SHROOM1-201ENST00000319854 PLEKHF1Q96S99 279 aa19.79■□□□□ 0.76
SHROOM1-201ENST00000319854 POLKQ9UBT6 870 aa19.79■□□□□ 0.76
SHROOM1-201ENST00000319854 PHF23Q9BUL5 403 aaPredicted RBP19.79■□□□□ 0.76
SHROOM1-201ENST00000319854 CD163L1Q9NR16 1453 aa19.79■□□□□ 0.76
SHROOM1-201ENST00000319854 WASLO00401 505 aaPredicted RBP19.78■□□□□ 0.76
SHROOM1-201ENST00000319854 NUDT16Q96DE0 195 aaKnown RBP19.78■□□□□ 0.76
SHROOM1-201ENST00000319854 PHACTR3Q96KR7 559 aa19.77■□□□□ 0.76
SHROOM1-201ENST00000319854 SLKQ9H2G2 1235 aaPredicted RBP19.77■□□□□ 0.76
SHROOM1-201ENST00000319854 SSH1Q8WYL5 1049 aa19.77■□□□□ 0.75
SHROOM1-201ENST00000319854 IQSEC2Q5JU85 1478 aa19.76■□□□□ 0.75
SHROOM1-201ENST00000319854 ARXQ96QS3 562 aa19.76■□□□□ 0.75
SHROOM1-201ENST00000319854 ITPRIPQ8IWB1 547 aa19.76■□□□□ 0.75
SHROOM1-201ENST00000319854 CCDC27Q2M243 656 aa19.75■□□□□ 0.75
SHROOM1-201ENST00000319854 NINLQ9Y2I6 1382 aa19.74■□□□□ 0.75
SHROOM1-201ENST00000319854 ARHGEF40Q8TER5 1519 aa19.74■□□□□ 0.75
SHROOM1-201ENST00000319854 ZKSCAN2Q63HK3 967 aa19.73■□□□□ 0.75
SHROOM1-201ENST00000319854 PPIP5K1Q6PFW1 1433 aa19.73■□□□□ 0.75
SHROOM1-201ENST00000319854 DZIP1LQ8IYY4 767 aaKnown RBP19.73■□□□□ 0.75
SHROOM1-201ENST00000319854 NOB1Q9ULX3 412 aaKnown RBP19.73■□□□□ 0.75
SHROOM1-201ENST00000319854 COG3Q96JB2 828 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 PPP6R1Q9UPN7 881 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 TRIM27P14373 513 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 DCTN1Q14203 1278 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 LTKP29376 864 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 CCDC61Q9Y6R9 512 aa19.71■□□□□ 0.75
SHROOM1-201ENST00000319854 PKNOX2Q96KN3 472 aa19.7■□□□□ 0.74
SHROOM1-201ENST00000319854 FAM83GA6ND36 823 aa19.7■□□□□ 0.74
SHROOM1-201ENST00000319854 PMFBP1Q8TBY8 1022 aa19.69■□□□□ 0.74
SHROOM1-201ENST00000319854 NLRP1Q9C000 1473 aa19.69■□□□□ 0.74
SHROOM1-201ENST00000319854 TNRQ92752 1358 aa19.69■□□□□ 0.74
SHROOM1-201ENST00000319854 MVPQ14764 893 aaKnown RBP19.68■□□□□ 0.74
SHROOM1-201ENST00000319854 PDZRN3Q9UPQ7 1066 aa19.68■□□□□ 0.74
SHROOM1-201ENST00000319854 USP32Q8NFA0 1604 aa19.68■□□□□ 0.74
SHROOM1-201ENST00000319854 PLEKHG5O94827 1062 aa19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 FCHSD2O94868 740 aa19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 HDGFP51858 240 aaKnown RBP19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 PRR36Q9H6K5 1346 aa19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 XRCC6P12956 609 aaKnown RBP eCLIP19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 ANTXR1Q9H6X2 564 aa19.67■□□□□ 0.74
SHROOM1-201ENST00000319854 TMEM57Q8N5G2 664 aa19.66■□□□□ 0.74
SHROOM1-201ENST00000319854 PANK2Q9BZ23 570 aa19.66■□□□□ 0.74
SHROOM1-201ENST00000319854 TSPYL6Q8N831 410 aa19.65■□□□□ 0.74
SHROOM1-201ENST00000319854 AEBP1Q8IUX7 1158 aa19.65■□□□□ 0.74
SHROOM1-201ENST00000319854 COL3A1P02461 1466 aaPredicted RBP19.65■□□□□ 0.74
SHROOM1-201ENST00000319854 ROBO2Q9HCK4 1378 aa19.65■□□□□ 0.74
SHROOM1-201ENST00000319854 TRHP20396 242 aaPredicted RBP19.64■□□□□ 0.73
SHROOM1-201ENST00000319854 ATF7IPQ6VMQ6 1270 aa19.64■□□□□ 0.73
SHROOM1-201ENST00000319854 PNNQ9H307 717 aaKnown RBP19.64■□□□□ 0.73
SHROOM1-201ENST00000319854 RWDD1Q9H446 243 aaPredicted RBP19.64■□□□□ 0.73
SHROOM1-201ENST00000319854 L1TD1Q5T7N2 865 aaKnown RBP19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 RBM33Q96EV2 1170 aaKnown RBP19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 AGLP35573 1532 aa19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 SPATA31D1Q6ZQQ2 1576 aa19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 NUTM2GQ5VZR2 741 aa19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 NAP1L5Q96NT1 182 aaPredicted RBP19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 C1orf115Q9H7X2 142 aa19.63■□□□□ 0.73
SHROOM1-201ENST00000319854 IL13P35225 146 aa19.62■□□□□ 0.73
SHROOM1-201ENST00000319854 GZF1Q9H116 711 aaPredicted RBP19.62■□□□□ 0.73
SHROOM1-201ENST00000319854 NFE2L2Q16236 605 aa19.61■□□□□ 0.73
SHROOM1-201ENST00000319854 ACEP12821 1306 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms