RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 HSPA2P54652 639 aa20.78■□□□□ 0.92
USH1C-202ENST00000318024 DIP2AQ14689 1571 aa20.78■□□□□ 0.92
USH1C-202ENST00000318024 ADAMTS8Q9UP79 889 aa20.77■□□□□ 0.92
USH1C-202ENST00000318024 NPHP4O75161 1426 aaPredicted RBP20.77■□□□□ 0.92
USH1C-202ENST00000318024 PTCH1Q13635 1447 aa20.76■□□□□ 0.91
USH1C-202ENST00000318024 IL27Q8NEV9 243 aa20.76■□□□□ 0.91
USH1C-202ENST00000318024 NEFMP07197 916 aa20.75■□□□□ 0.91
USH1C-202ENST00000318024 PIK3R4Q99570 1358 aa20.75■□□□□ 0.91
USH1C-202ENST00000318024 WDR43Q15061 677 aaKnown RBP eCLIP20.74■□□□□ 0.91
USH1C-202ENST00000318024 LAS1LQ9Y4W2 734 aaKnown RBP20.74■□□□□ 0.91
USH1C-202ENST00000318024 PPM1GO15355 546 aaPredicted RBP20.74■□□□□ 0.91
USH1C-202ENST00000318024 MTHFSP49914 203 aa20.73■□□□□ 0.91
USH1C-202ENST00000318024 ATP7BP35670 1465 aa20.73■□□□□ 0.91
USH1C-202ENST00000318024 PMFBP1Q8TBY8 1022 aa20.73■□□□□ 0.91
USH1C-202ENST00000318024 FBLN1P23142 703 aa20.72■□□□□ 0.91
USH1C-202ENST00000318024 CPSF1Q10570 1443 aaKnown RBP20.71■□□□□ 0.91
USH1C-202ENST00000318024 XRN1Q8IZH2 1706 aaKnown RBP20.71■□□□□ 0.91
USH1C-202ENST00000318024 NSD2O96028 1365 aa20.71■□□□□ 0.91
USH1C-202ENST00000318024 PLIN1O60240 522 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 CRBNQ96SW2 442 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 ZRANB1Q9UGI0 708 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 ACEP12821 1306 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 KDM2BQ8NHM5 1336 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 NME9Q86XW9 330 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 USP32Q8NFA0 1604 aa20.7■□□□□ 0.9
USH1C-202ENST00000318024 ADGRB2O60241 1585 aa20.68■□□□□ 0.9
USH1C-202ENST00000318024 SKAP1Q86WV1 359 aa20.68■□□□□ 0.9
USH1C-202ENST00000318024 ANO8Q9HCE9 1232 aaPredicted RBP20.68■□□□□ 0.9
USH1C-202ENST00000318024 C14orf37Q86TY3 774 aa20.67■□□□□ 0.9
USH1C-202ENST00000318024 CCDC146Q8IYE0 955 aa20.67■□□□□ 0.9
USH1C-202ENST00000318024 DDRGK1Q96HY6 314 aa20.66■□□□□ 0.9
USH1C-202ENST00000318024 ZNF692Q9BU19 519 aaPredicted RBP20.66■□□□□ 0.9
USH1C-202ENST00000318024 PLEKHG3A1L390 1219 aa20.66■□□□□ 0.9
USH1C-202ENST00000318024 CHD2O14647 1828 aaKnown RBP20.65■□□□□ 0.9
USH1C-202ENST00000318024 EDC4Q6P2E9 1401 aaKnown RBP20.65■□□□□ 0.9
USH1C-202ENST00000318024 POLR3AO14802 1390 aaPredicted RBP20.64■□□□□ 0.9
USH1C-202ENST00000318024 CDC42BPGQ6DT37 1551 aa20.64■□□□□ 0.89
USH1C-202ENST00000318024 NKTRP30414 1462 aaKnown RBP20.64■□□□□ 0.89
USH1C-202ENST00000318024 NGDNQ8NEJ9 315 aaKnown RBP20.63■□□□□ 0.89
USH1C-202ENST00000318024 C20orf194Q5TEA3 1177 aa20.62■□□□□ 0.89
USH1C-202ENST00000318024 PROSER2Q86WR7 435 aaPredicted RBP20.62■□□□□ 0.89
USH1C-202ENST00000318024 CFAP53Q96M91 514 aa20.61■□□□□ 0.89
USH1C-202ENST00000318024 TTC21BQ7Z4L5 1316 aa20.6■□□□□ 0.89
USH1C-202ENST00000318024 COG3Q96JB2 828 aa20.59■□□□□ 0.89
USH1C-202ENST00000318024 ZNF521Q96K83 1311 aa20.59■□□□□ 0.89
USH1C-202ENST00000318024 NFKBIBQ15653 356 aa20.57■□□□□ 0.88
USH1C-202ENST00000318024 DUSP27Q5VZP5 1158 aa20.57■□□□□ 0.88
USH1C-202ENST00000318024 POLKQ9UBT6 870 aa20.57■□□□□ 0.88
USH1C-202ENST00000318024 USP6P35125 1406 aa20.57■□□□□ 0.88
USH1C-202ENST00000318024 RGPD8O14715 1765 aaPredicted RBP20.57■□□□□ 0.88
USH1C-202ENST00000318024 CENPQQ7L2Z9 268 aaPredicted RBP20.57■□□□□ 0.88
USH1C-202ENST00000318024 APAF1O14727 1248 aa20.56■□□□□ 0.88
USH1C-202ENST00000318024 SOX12O15370 315 aa20.56■□□□□ 0.88
USH1C-202ENST00000318024 C8orf34Q49A92 452 aa20.56■□□□□ 0.88
USH1C-202ENST00000318024 EMILIN1Q9Y6C2 1016 aa20.56■□□□□ 0.88
USH1C-202ENST00000318024 RRS1Q15050 365 aaKnown RBP20.55■□□□□ 0.88
USH1C-202ENST00000318024 ESCO1Q5FWF5 840 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 TOPAZ1Q8N9V7 1692 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 LMTK3Q96Q04 1460 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 KIF20BQ96Q89 1820 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 U2SURPO15042 1029 aaKnown RBP20.55■□□□□ 0.88
USH1C-202ENST00000318024 U2AF1L5P0DN76 240 aaPredicted RBP20.55■□□□□ 0.88
USH1C-202ENST00000318024 U2AF1Q01081 240 aaKnown RBP eCLIP20.55■□□□□ 0.88
USH1C-202ENST00000318024 GSE1Q14687 1217 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 NALCNQ8IZF0 1738 aa20.55■□□□□ 0.88
USH1C-202ENST00000318024 ADGRL3Q9HAR2 1447 aa20.54■□□□□ 0.88
USH1C-202ENST00000318024 ITSN1Q15811 1721 aa20.54■□□□□ 0.88
USH1C-202ENST00000318024 MON2Q7Z3U7 1717 aa20.53■□□□□ 0.88
USH1C-202ENST00000318024 ANKARQ7Z5J8 1434 aa20.53■□□□□ 0.88
USH1C-202ENST00000318024 AKAP12Q02952 1782 aa20.53■□□□□ 0.88
USH1C-202ENST00000318024 NUTM2GQ5VZR2 741 aa20.53■□□□□ 0.88
USH1C-202ENST00000318024 RTN4Q9NQC3 1192 aaKnown RBP20.53■□□□□ 0.88
USH1C-202ENST00000318024 PHF8Q9UPP1 1060 aa20.53■□□□□ 0.88
USH1C-202ENST00000318024 FAM161AQ3B820 660 aa20.51■□□□□ 0.87
USH1C-202ENST00000318024 ORAI2Q96SN7 254 aa20.51■□□□□ 0.87
USH1C-202ENST00000318024 ANKRD26Q9UPS8 1709 aa20.51■□□□□ 0.87
USH1C-202ENST00000318024 NEUROD2Q15784 382 aa20.51■□□□□ 0.87
USH1C-202ENST00000318024 FMN2Q9NZ56 1722 aa20.5■□□□□ 0.87
USH1C-202ENST00000318024 DIAPH1O60610 1272 aaKnown RBP20.5■□□□□ 0.87
USH1C-202ENST00000318024 RRP7AQ9Y3A4 280 aaKnown RBP20.5■□□□□ 0.87
USH1C-202ENST00000318024 SSH2Q76I76 1423 aa20.49■□□□□ 0.87
USH1C-202ENST00000318024 SHPRHQ149N8 1683 aa20.49■□□□□ 0.87
USH1C-202ENST00000318024 SLC4A3P48751 1232 aa20.49■□□□□ 0.87
USH1C-202ENST00000318024 TRMT2AQ8IZ69 625 aaKnown RBP20.49■□□□□ 0.87
USH1C-202ENST00000318024 TMEM94Q12767 1356 aa20.48■□□□□ 0.87
USH1C-202ENST00000318024 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
USH1C-202ENST00000318024 NWD1Q149M9 1564 aa20.48■□□□□ 0.87
USH1C-202ENST00000318024 BRPF3Q9ULD4 1205 aa20.47■□□□□ 0.87
USH1C-202ENST00000318024 NLRP6P59044 892 aa20.47■□□□□ 0.87
USH1C-202ENST00000318024 XPCQ01831 940 aaPredicted RBP20.47■□□□□ 0.87
USH1C-202ENST00000318024 RUNDC1Q96C34 613 aa20.47■□□□□ 0.87
USH1C-202ENST00000318024 PNPLA6Q8IY17 1366 aa20.47■□□□□ 0.87
USH1C-202ENST00000318024 FOXO3O43524 673 aa20.46■□□□□ 0.87
USH1C-202ENST00000318024 PSME1Q06323 249 aa20.46■□□□□ 0.87
USH1C-202ENST00000318024 TTC21AQ8NDW8 1320 aa20.46■□□□□ 0.87
USH1C-202ENST00000318024 COL3A1P02461 1466 aaPredicted RBP20.46■□□□□ 0.87
USH1C-202ENST00000318024 VIRMAQ69YN4 1812 aaKnown RBP20.46■□□□□ 0.87
USH1C-202ENST00000318024 TCP11L2Q8N4U5 519 aa20.46■□□□□ 0.87
USH1C-202ENST00000318024 ABTB2Q8N961 1025 aa20.46■□□□□ 0.87
USH1C-202ENST00000318024 FRAT1Q92837 279 aaPredicted RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms